Nontemplated base addition by HIV-1 RT can induce nonspecific strand transfer in vitro

Virology

Volumn 294, Issue 1, 2002, Pages 122-134

  Golinelli, Marie Pierre ^a   Hughes, Stephen H ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

Author keywords

Fidelity; Nontemplated base addition; Reverse transcription; Strand transfer

Indexed keywords

OLIGONUCLEOTIDE; RIBONUCLEASE; VIRUS DNA; VIRUS RNA;

ARTICLE; CONCENTRATION RESPONSE; CONTROLLED STUDY; DNA SYNTHESIS; ENZYME DEGRADATION; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN T CELL LEUKEMIA VIRUS 1; IN VITRO STUDY; IN VIVO STUDY; NONHUMAN; PRIORITY JOURNAL; REDUCTION; RETROVIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRUS GENOME;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 2; HUMAN T-LYMPHOTROPIC VIRUS 1; MOLONEY MURINE LEUKEMIA VIRUS; MURINAE; MURINE LEUKEMIA VIRUS;

EID: 0036063795     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.2001.1322     Document Type: Article

References (48)

1. Production of acquired immunodeficiency syndrome-associated retrovirus in human and nonhuman cells transfected with an infectious molecular clone
2. Mapping of multiple RNA binding sites of human T-cell lymphotropic virus type I rex protein within 5′- and 3′-Rex response elements
3. Trans activation of human immunodeficiency virus type 1 is sequence specific for both the single-stranded bulge and loop of the trans-acting-responsive hairpin: A quantitative analysis
4. Facilitation of hammerhead ribozyme catalysis by the nucleocapsid protein of HIV-1 and the heterogeneous nuclear ribonucleoprotein A1
5. Sensitivity of wild-type human immunodeficiency virus type 1 reverse transcriptase to dideoxynucleotides depends on template length: The sensitivity of drug-resistant mutants does not
6. Novel non-templated nucleotide addition reactions catalyzed by procaryotic and eucaryotic DNA polymerases
7. Novel blunt-end addition reactions catalyzed by DNA polymerase I of Escherichia coli
8. Molecular cloning and polymorphism of the human immune deficiency virus
9. Structure, replication, and recombination of retrovirus genomes: Some unifying hypotheses
10. Structure of a cloned circular retroviral DNA containing a tRNA sequence between the terminal repeats
11. Retroviral nucleocapsid proteins possess potent nucleic acid strand renaturation activity
12. Human immunodeficiency virus type 1 nucleocapsid protein can prevent self-priming of minus-strand strong-stop DNA by promoting the annealing of short oligonucleotides to hairpin sequences
13. Characterization of unintegrated retroviral DNA with long terminal repeat-associated cell-derived inserts
14. The specificity of the human immunodeficiency virus type 2 transactivator is different from that of human immunodeficiency virus type 1
15. Fidelity of retrotransposon replication
16. Retroviral reverse transcriptase: Synthesis, structure, and function
17. Self-priming of retroviral minus-strand strong-stop DNAs
18. Genetic analysis of the zinc finger in the Moloney murine leukemia virus nucleocapsid domain: Replacement of zinc-coordinating residues with other zinc-coordinating residues yields noninfectious particles containing genomic RNA
19. Characterization of the block in replication of nucleocapsid protein zinc finger mutants from moloney murine leukemia virus
20. Human immunodeficiency virus type 1 nucleocapsid protein promotes efficient strand transfer and specific viral DNA synthesis by inhibiting TAR-dependent self-priming from minus-strand strong-stop DNA
21. An RNA chaperone activity of non-specific RNA binding proteins in hammerhead ribozyme catalysis
22. DNA polymerase-catalyzed addition of nontemplated extra nucleotides to the 3′ end of a DNA fragment
23. What is the orientation of DNA polymerases on their templates?
24. Analysis of human immunodeficiency virus type 1 LTR-LTR junctions in peripheral blood mononuclear cells of infected individuals
25. Determination of the site of first strand transfer during Moloney murine leukemia virus reverse transcription and identification of strand transfer-associated reverse transcriptase errors
26. Substrate nucleotide-determined non-templated addition of adenine by Taq DNA polymerase: Implications for PCR-based genotyping and cloning
27. Molecular cloning and complete nucleotide sequence of an adult T cell leukaemia virus/human T cell leukaemia virus type I (ATLV/HTLV-I) isolate of Caribbean origin: Relationship to other members of the ATLV/HTLV-I subgroup
28. In vivo analysis of human T-cell leukemia virus type 1 reverse transcription accuracy
29. Capture of retrotransposon DNA at the sites of chromosomal double-strand breaks
30. Regulation of mRNA accumulation by a human immunodeficiency virus transactivator protein
31. In vivo Ty1 reverse transcription can generate replication intermediates with untidy ends
32. Amino acid requirements of the nucleocapsid protein of HIV-1 for increasing catalytic activity of a Ki-ras ribozyme in vitro
33. Helix structure and ends of RNA/DNA hybrids direct the cleavage specificity of HIV-1 reverse transcriptase RNase H
34. Ordered interstrand and intrastrand DNA transfer during reverse transcription
35. Genetic rearrangements occurring during a single cycle of murine leukemia virus vector replication: Characterization and implications
36. Marked infidelity of human immunodeficiency virus type 1 reverse transcriptase at RNA and DNA template ends
37. Mechanism of DNA strand transfer reactions catalyzed by HIV-1 reverse transcriptase
38. Characterization of large deletions occurring during a single round of retrovirus vector replication: Novel deletion mechanism involving errors in strand transfer
39. HIV-1 RT-associated ribonuclease H displays both endonuclease and 3′-5′ exonuclease activity
40. Analysis of long terminal repeat circle junctions of human immunodeficiency virus type 1
41. Retrotransposon reverse-transcriptase-mediated repair of chromosomal breaks
42. DNA strand exchange and selective DNA annealing promoted by the human immunodeficiency virus type 1 nucleocapsid protein
43. Protein enhancement of hammerhead ribozyme catalysis
44. Retroviral reverse transcription and integration: Progress and problems
45. Heterogeneous terminal structure of Ty1 and Ty3 reverse transcripts
46. HIV nucleocapsid protein. Expression in Escherichia coli, purification, and characterization
47. Rate and mechanism of nonhomologous recombination during a single cycle of retroviral replication