Multicolor chromosome banding (MCB) with YAC/BAC-based probes and region-specific microdissection DNA libraries

Cytogenetic and Genome Research

Volumn 97, Issue 1-2, 2002, Pages 43-50

  Liehr, T ^a   Weise, A ^a   Heller, A ^a   Starke, H ^a   Mrasek, K ^a   Kuechler, A ^a   Weier, H U G ^b   Claussen, U ^a  

^a FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; CHROMOSOME 13; CHROMOSOME 2; CHROMOSOME 22; CHROMOSOME BANDING PATTERN; CHROMOSOME MICRODISSECTION; CHROMOSOME SIZE; COMPARATIVE STUDY; DNA LIBRARY; DNA PROBE; FLUORESCENCE IN SITU HYBRIDIZATION; GENE LOCUS; HUMAN; MALE; PRIORITY JOURNAL; YEAST ARTIFICIAL CHROMOSOME; CHROMOSOME PAINTING; GENE LIBRARY; GENETICS; METHODOLOGY;

BACTERIA (MICROORGANISMS);

DNA;

CHROMOSOME BANDING; CHROMOSOME PAINTING; CHROMOSOMES, ARTIFICIAL, BACTERIAL; CHROMOSOMES, ARTIFICIAL, YEAST; CHROMOSOMES, HUMAN, PAIR 13; CHROMOSOMES, HUMAN, PAIR 2; CHROMOSOMES, HUMAN, PAIR 22; DNA; DNA PROBES; GENE LIBRARY; HUMANS; IN SITU HYBRIDIZATION, FLUORESCENCE;

EID: 0036044083     PISSN: 14248581     EISSN: None     Source Type: Journal    
DOI: 10.1159/000064043     Document Type: Article

References (45)

1. Aurich-Costa J, Vannier A, Gregoire E, Nowak F, Cherif D: IPM-FISH, a new M-FISH approach using IRS-PCR painting probes: application to the analysis of seven human prostate cell lines. Genes Chrom Cancer 30:143-160 (2001).
2. Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE: Segmental duplications: organization and impact within the current human genome project assembly. Genome Res 11:1005-1017 (2001).
3. Cohen D, Chumakov I, Weissenbach J: A first-generation physical map of the human genome. Nature 366:698-701 (1993).
4. Chudoba I, Plesch A, Lörch T, Lemke J, Claussen U, Senger G: High resolution multicolor-banding: a new technique for refined FISH analysis of human chromosomes. Cytogenet Cell Genet 84:156-160 (1999).
5. Chudoba I, Senger G: Microdissection of chromosomes and reverse FISH, in Rautenstrauss B, Liehr T (eds): FISH-Technology, Springer-Labmanual, pp 388-407 (Springer, Berlin 2002).
6. Dufke A, Walczak C, Liehr T, Starke H, Trifonov V, Rubtsov N, Schöning M, Enders H, Eggermann T: Partial tetrasomy 12pter→p12.3 in a girl with Pallister-Killian syndrome: extraordinary finding of an analphoid, inverted duplicated marker. Eur J hum Genet 9:572-576 (2001).
7. Gisselsson D, Hoglund M, Mertens F, Johansson B, Dal Cin P, Van den Berghe H, Earnshaw WC, Mitelman F, Mandahl N: The structure and dynamics of ring chromosomes in human neoplastic and non-neoplastic cells. Hum Genet 104:315-325 (1999).
8. Heller A, Starke H, Trifonov V, Rubtsov N, Wedding U, Loncarevic I, Bleck C, Claussen U, Liehr T: A complex translocation event between the two homologues of chromosomes 5 leading to a del(5)(q21q33) as a sole aberration in a case clinically diagnosed as CML: Characterization of the aberration by multicolor banding. Int J Oncol 20:1179-1181 (2002).
9. Henegariu O, Vance GH, Heiber D, Pera M, Heerema NA: Triple-color FISH analysis of 12p amplification in testicular germ-cell tumors using 12p band-specific painting probes. J molec Med 76:648-655 (1998).
10. Hliscs R, Muhlig P, Claussen U: The nature of G-bands analyzed by chromosome stretching. Cytogenet Cell Genet 79:162-166 (1997).
11. Horvath JE, Bailey JA, Locke DP, Eichler EE: Lessons from the human genome: transitions between euchromatin and heterochromatin. Hum molec Genet 10:2215-2223 (2001).
12. Kakazu N, Ashihara E, Hada S, Ueda T, Sasaki H, Terada M, See TA: Development of spectral colour banding in cytogenetic analysis. Lancet 357:529-530 (2001).
13. Lemke J, Chudoba I, Senger G, Stumm M, Loncarevic IF, Henry C, Zabel B, Claussen U: Improved definition of chromosomal breakpoints using high resolution multicolour banding (MCB). Hum Genet 108:478-483 (2001).
14. Lengauer C, Speicher MR, Popp S, Jauch A, Taniwaki M, Nagaraja R, Riethman HC, Donis-Keller H, D'Urso M, Schlessinger D, Cremer T: Chromosomal bar codes produced by multicolor fluorescence in situ hybridization with multiple YAC clones and whole chromosome painting probes. Hum molec Genet 2:505-512 (1993).
15. Lichter P, Tang CJ, Call K, Hermanson G, Evans GA, Housman D, Ward DC: High-resolution mapping of human chromosome 11 by in situ hybridization with cosmid clones. Science 247:64-69 (1991).
16. Liehr T, Claussen U: Current developments in human molecular cytogenetic techniques. Curr Mol Med 2:283-297 (2002).
17. Liehr T, Claussen U: Multicolor-FISH approaches for the characterization of human chromosomes in clinical genetics and tumor cytogenetics. Current Genomics 3:213-235 (2002a).
18. Liehr T, Thoma K, Kammler K, Gehring C, Ekici A, Bathke KD, Grehl H, Rautenstrauss B: Direct preparation of uncultured EDTA-treated or heparinized blood for interphase FISH analysis. Appl Cytogenet 21:185-188 (1995).
19. Liehr T, Heller A, Starke H, Rubtsov N, Trifonov V, Mrasek K, Weise A, Kuechler A, Claussen U: Microdissection based high resolution multicolor banding (MCB) for all 24 human chromosomes. Int J Mol Med 9:335-339 (2002).
20. Liehr T, Heller A, Starke H, Claussen U: FISH banding methods: applications in research and diagnostics. Expert Rev Mol Diagn, 2:217-225 (2002a).
21. Liehr T, Schmidt M, Starke H, Ziegler M, Kittner G, Heller A, Rubtsov N, Trifonov V, Claussen U: First case of trisomy 13 plus mosaic trisomy 1q. Fetal Diagn Ther 17:133-136 (2002b).
22. Mrasek K, Heller A, Rubtsov N, Trifonov V, Starke H, Rocchi M, Claussen U, Liehr T: Reconstruction of the female Gorilla gorilla karyotype by Zoo-FISH using 25-color FISH and multicolor banding (MCB). Cytogenet Cell Genet 93:242-248 (2001).
23. Müller S, Rocchi M, Ferguson-Smith MA, Wienberg J: Toward a multicolor chromosome bar code for the entire human karyotype by fluorescence in situ hybridization. Hum Genet 100:271-278 (1997).
24. Müller S, O'Brien PC, Ferguson-Smith MA, Wienberg J: Cross-species colour segmenting: a novel tool in human karyotype analysis. Cytometry 33:445-452 (1998).
25. Müller S, Wienberg J: "Bar-coding" primate chromosomes: molecular cytogenetic screening for the ancestral hominoid karyotype. Hum Genet 109:85-94 (2001).
26. Nederlof PM, Robinson D, Abuknesha R, Wiegant J, Hopman AH, Tanke HJ, Raap AK: Three-color fluorescence in situ hybridization for the simultaneous detection of multiple nucleic acid sequences. Cytometry 10:20-27 (1989).
27. Nogami M, Nogami O, Kagotani K, Okumura M, Taguchi H, Ikemura T, Okumura K: Intranuclear arrangement of human chromosome 12 correlates to large-scale replication domains. Chromosoma 108:514-522 (2000).
28. Reichenbach H, Holland H, Dalitz E, Demandt C, Meiner A, Chudoba I, Lemke J, Claussen U, Froster UG: De novo complete trisomy 5p: clinical report and FISH studies. Am J med Genet 85:447-451 (1999).
29. Saccone S, Federico C, Solovei I, Croquette MF, Della Valle G, Bernardi G: Identification of the gene-richest bands in human prometaphase chromosomes. Chrom Res 7:379-386 (1999).
30. Saracoglu K, Brown J, Kearney L, Uhrig S, Azofeifa J, Fauth C, Speicher MR, Eils R: New concepts to improve resolution and sensitivity of molecular cytogenetic diagnostics by multicolor fluorescence in situ hybridization. Cytometry 44:7-15 (2001).
31. Schmidt H, Uhrig S, Lederer G, Murken J, Speicher MR, Schuffenhauer S: Mosaicism for a dup(12) (q22q13) in a patient with hypomelanosis of Ito and asymmetry. J med Genet 37:804-807 (2000).
32. Schröck E, du Manoir S, Veldman T, Schoell B, Wienberg J, Ferguson-Smith MA, Ning Y, Ledbetter DH, Bar-Am I, Soenksen D, Garini Y, Ried T: Multicolor spectral karyotyping of human chromosomes. Science 273:494-497 (1996).
33. Senger G, Chudoba I, Plesch A: Multicolor-FISH - the identification of chromosome aberrations by 24 colors. BIOforum 9:499-503 (1998).
34. Shaikh TH, Kurahashi H, Emanuel BS: Evolutionarily conserved low copy repeats (LCRs) in 22q11 mediate deletions, duplications, translocations, and genomic instability: an update and literature review. Genet Med 3:6-13 (2001).
35. Speicher MR, Gwyn Ballard S, Ward DC: Karyotyping human chromosomes by combinatorial multi-fluor FISH. Nature Genet 12:368-375 (1996).
36. Speicher MR, Petersen S, Uhrig S, Jentsch I, Fauth C, Eils R, Petersen I: Analysis of chromosomal alterations in non-small cell lung cancer by multiplex-FISH, comparative genomic hybridization, and multicolor bar coding. Lab Invest 80:1031-1041 (2000).
37. Starke H, Raida M, Trifonov V, Clement JH, Loncarevic IF, Heller A, Bleck C, Nietzel A, Rubtsov N, Claussen U, Liehr T: Molecular cytogenetic characterization of an acquired supernumerary minute marker chromosome as sole abnormality in a case clinically diagnosed as Philadelphia negative chronic myelogenous leukaemia. Br J Haematol 113:435-438 (2001a)
38. Starke H, Senger G, Kossakiewicz M, Tittelbach H, Rau D, Rubtsov N, Trifonov V, Heller A, Hartmann I, Claussen U, Liehr T: Maternal insertion of 18q11.2→q12.2 in 18p11.3 of the same chromo)some analysed by microdissection and multicolour banding (MCB). Prenat Diag 21:1049-1052 (2001b).
39. Telenius H, Carter NP, Bebb CE, Nordenskjold M, Ponder BA, Tunnacliffe A: Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer. Genomics 13:718-725 (1992).
40. Uhrig S, Schuffenhauer S, Fauth C, Wirtz A, Daumer-Haas C, Apacik C, Cohen M, Müller-Navia J, Cremer T, Murken J, Speicher MR: Multiplex-FISH for pre- and postnatal diagnostic applications. Am J hum Genet 65:448-462 (1999).
41. Weier H-UG, O'Brien B, Duell TH, Wong MG, Kuo W-L, Siperstein AE, Duh Q-Y, Clark OH: High-resolution, multilocus karyotype analysis with "Chromosomal Rainbows" (CR): a novel technique applied to rapid characterization of rearranged chromosomes in primary cultures and cell lines from thyroid cancers. Am J hum Genet 59 (Suppl):A50 (1996).
42. Weise A, Starke H, Heller A, Tönnies H, Volleth M, Stumm M, Senger G, Nietzel A, Claussen U, Liehr T: Chromosome 2 aberrations in clinical cases characterized by high resolution multicolor banding (MCB) and region specific FISH probes. J med Genet in press (2002a).
43. Weise A, Starke H, Heller A, Claussen U, Liehr T: Evidence for interphase DNA decondensation transverse to the chromosome axis - a multicolor banding (MCB) analysis. Int J molec Med, 9:359-361 (2002b).
44. Wienberg J, Müller S: Chromosome bar codes: Defining karyotypes with molecular tags by multi color FISH. ECA Newsletter 9:3-8 (2002).
45. Zitzelsberger HF, O'Brien B, Weier HUG: Multicolor FISH techniques for the detection of inter- and intrachromosomal rearrangements, in Rauten-strauss B, Liehr T (eds): FISH Technology, pp 408-424 (Springer Verlag, Heidelberg 2002).