-
1
-
-
0036191191
-
A cluster validity framework for genome expression data
-
AZUAJE F. (2002). A cluster validity framework for genome expression data. Bioinformatics 18: 319-320.
-
(2002)
Bioinformatics
, vol.18
, pp. 319-320
-
-
Azuaje, F.1
-
2
-
-
0003727540
-
-
Marcel Dekker Inc., New York
-
BANERJEE K.S. (1975). Weighing Designs for Chemistry, Medicine, Economics, Operations Research, Statistics. Marcel Dekker Inc., New York.
-
(1975)
Weighing Designs for Chemistry, Medicine, Economics, Operations Research, Statistics
-
-
Banerjee, K.S.1
-
4
-
-
0036083376
-
Unsupervised technique for robust target separation and analysis of DNA microarray spots through adaptive pixel clustering
-
BOZINOV D., RAHNENFÜHRER J. (2002). Unsupervised technique for robust target separation and analysis of DNA microarray spots through adaptive pixel clustering. Bioinformatics 18: 747-756.
-
(2002)
Bioinformatics
, vol.18
, pp. 747-756
-
-
Bozinov, D.1
Rahnenführer, J.2
-
6
-
-
0035979269
-
Image metrics in the statistical analysis of DNA microarray data
-
BROWN C.S., GOODWIN P.C., SORGER P.K. (2001). Image metrics in the statistical analysis of DNA microarray data. Proc. Natl. Acad. Sci. 98: 8944-8949.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 8944-8949
-
-
Brown, C.S.1
Goodwin, P.C.2
Sorger, P.K.3
-
7
-
-
0034602774
-
Knowledge-based analysis of microarray gene expression data by using support vector machines
-
BROWN M.P.S., GRUNDY W.N., LIN D., CRISTIANINI N., SUGNET C.W., FUREY T.S., ARES Jr M., HAUSSLER D. (2000). Knowledge-based analysis of microarray gene expression data by using support vector machines. Proc. Natl. Acad. Sci. 97: 262-267.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 262-267
-
-
Brown, M.P.S.1
Grundy, W.N.2
Lin, D.3
Cristianini, N.4
Sugnet, C.W.5
Furey, T.S.6
Ares M., Jr.7
Haussler, D.8
-
9
-
-
0036169143
-
Using biplots to interpret gene expression patterns in plants
-
CHAPMAN S., SCHENK P., KAZAN K., MANNERS J. (2002). Using biplots to interpret gene expression patterns in plants. Bioinformatics 18: 202-204.
-
(2002)
Bioinformatics
, vol.18
, pp. 202-204
-
-
Chapman, S.1
Schenk, P.2
Kazan, K.3
Manners, J.4
-
10
-
-
0031246430
-
Ratio-based decisions and the quantitative analysis of cDNA microarray images
-
CHEN Y., DOUGHERTY E.R., BITTNER M.L. (1997). Ratio-based decisions and the quantitative analysis of cDNA microarray images. J. Biomed. Optics 2: 364-374.
-
(1997)
J. Biomed. Optics
, vol.2
, pp. 364-374
-
-
Chen, Y.1
Dougherty, E.R.2
Bittner, M.L.3
-
11
-
-
0036126862
-
Multivariate approach for selecting sets of differentially expressed genes
-
CHILINGARYAN A., GEVORGYAN N., VARDANYAN A., JONES D., SZABO A. (2002). Multivariate approach for selecting sets of differentially expressed genes. Math. Biosci. 176: 59-72.
-
(2002)
Math. Biosci.
, vol.176
, pp. 59-72
-
-
Chilingaryan, A.1
Gevorgyan, N.2
Vardanyan, A.3
Jones, D.4
Szabo, A.5
-
12
-
-
0036489046
-
Comparison of discrimination methods for the classification of tumors using gene expression data
-
DUDOIT S., FRIDLY AND J., SPEED T.P. (2002a) Comparison of discrimination methods for the classification of tumors using gene expression data. J. Am. Stat. Assoc. 97: 77-87.
-
(2002)
J. Am. Stat. Assoc.
, vol.97
, pp. 77-87
-
-
Dudoit, S.1
Fridlyand, J.2
Speed, T.P.3
-
13
-
-
0036376993
-
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
-
DUDOIT S., YANG Y.H., SPEED T.P., CALLOW M.J. (2002b). Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Statistica Sinica 12: 111-140.
-
(2002)
Statistica Sinica
, vol.12
, pp. 111-140
-
-
Dudoit, S.1
Yang, Y.H.2
Speed, T.P.3
Callow, M.J.4
-
15
-
-
0035845501
-
Correspondence analysis applied to microarray data
-
FELLENBERG K., HAUSER N.C., BRORS B., NEUTZNER A., HOHEISEL J.D., VINGRON M. (2001). Correspondence analysis applied to microarray data. Proc. Natl. Acad. Sci. 96: 10781-10786.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 10781-10786
-
-
Fellenberg, K.1
Hauser, N.C.2
Brors, B.3
Neutzner, A.4
Hoheisel, J.D.5
Vingron, M.6
-
16
-
-
0036080429
-
GP3: GenePix post-processing program for automated analysis of raw microarray data
-
FIELDEN M.R., HALGREN R.G., DERE E., ZACHAREWSKI T.R. (2002). GP3: GenePix post-processing program for automated analysis of raw microarray data. Bioinformatics 18: 771.
-
(2002)
Bioinformatics
, vol.18
, pp. 771
-
-
Fielden, M.R.1
Halgren, R.G.2
Dere, E.3
Zacharewski, T.R.4
-
18
-
-
0034710876
-
Coupled two-way clustering analysis of gene microarray data
-
GETZ G., LEVINE E., DOMANY E. (2000). Coupled two-way clustering analysis of gene microarray data. Proc. Natl. Acad. Sci. 97: 12079-12084.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 12079-12084
-
-
Getz, G.1
Levine, E.2
Domany, E.3
-
19
-
-
0036188158
-
Mixture modelling of gene expression data from microarray experiments
-
GHOSH D., CHINNAIYAN A.M. (2002). Mixture modelling of gene expression data from microarray experiments. Bioinformatics 18: 275-286.
-
(2002)
Bioinformatics
, vol.18
, pp. 275-286
-
-
Ghosh, D.1
Chinnaiyan, A.M.2
-
22
-
-
0034568109
-
'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns
-
research0003.1-0003.21
-
HASTIE T., TIBSHIRANI R., EISEN M.B., ALIZADEH A., LEVY R., STAUDT L., CHAN W.C., BOTSTEIN D., BROWN P. (2000). 'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns. Genome Biology 1(2): research0003.1-0003.21.
-
(2000)
Genome Biology
, vol.1
, Issue.2
-
-
Hastie, T.1
Tibshirani, R.2
Eisen, M.B.3
Alizadeh, A.4
Levy, R.5
Staudt, L.6
Chan, W.C.7
Botstein, D.8
Brown, P.9
-
23
-
-
0035400051
-
Genetical genomics: The added value from segregation
-
JANSEN R.C., NAP J-P. (2001). Genetical genomics: the added value from segregation. Trends in Genetics 17: 388-391.
-
(2001)
Trends in Genetics
, vol.17
, pp. 388-391
-
-
Jansen, R.C.1
Nap, J.-P.2
-
24
-
-
0036051915
-
DNa microarrays - A methodological breakthrough in genetics
-
KAMIŃSKI S. (2002). DNA microarrays - a methodological breakthrough in genetics. J. Appl. Genet. 43: 123-130.
-
(2002)
J. Appl. Genet.
, vol.43
, pp. 123-130
-
-
Kamiński, S.1
-
25
-
-
0035979259
-
Bootstrapping cluster analysis: Assessing the reliability of conclusions from microarray experiments
-
KERR M.K., CHURCHILL G.A. (2001a). Bootstrapping cluster analysis: Assessing the reliability of conclusions from microarray experiments. Proc. Natl. Acad. Sci. 98: 8961-8965.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 8961-8965
-
-
Kerr, M.K.1
Churchill, G.A.2
-
26
-
-
0000884487
-
Experimental design for gene expression microarrays
-
KERR M.K., CHURCHILL G.A. (2001b). Experimental design for gene expression microarrays. Biostatistics 2: 183-201.
-
(2001)
Biostatistics
, vol.2
, pp. 183-201
-
-
Kerr, M.K.1
Churchill, G.A.2
-
27
-
-
0034927555
-
Analysis of variance for gene expression microarray data
-
KERR M.K., MARTIN M., CHURCHILL G.A. (2000). Analysis of variance for gene expression microarray data. J. Computat. Biol. 7: 819-837.
-
(2000)
J. Computat. Biol.
, vol.7
, pp. 819-837
-
-
Kerr, M.K.1
Martin, M.2
Churchill, G.A.3
-
28
-
-
0038217829
-
Vector algebra in the analysis of genome-wide expression data
-
research 0011.1-0011.11
-
KURUVILLA F.G., PARK P.J., SCHREIBER S.L. (2002). Vector algebra in the analysis of genome-wide expression data. Genome Biology 3(3): research 0011.1-0011.11.
-
(2002)
Genome Biology
, vol.3
, Issue.3
-
-
Kuruvilla, F.G.1
Park, P.J.2
Schreiber, S.L.3
-
29
-
-
0034730124
-
Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
-
LEE M.L.T., KUO F.C., WHITMORE G.A., SKLAR J. (2000). Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations. Proc. Natl. Acad. Sci. 97: 9834-9839.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 9834-9839
-
-
Lee, M.L.T.1
Kuo, F.C.2
Whitmore, G.A.3
Sklar, J.4
-
30
-
-
0036203115
-
A mixture model-based approach to the clustering of microarray expression data
-
MCLACHLAN G.J., BEAN R.W., PEEL D. (2002). A mixture model-based approach to the clustering of microarray expression data. Bioinformatics 18: 413-422.
-
(2002)
Bioinformatics
, vol.18
, pp. 413-422
-
-
Mclachlan, G.J.1
Bean, R.W.2
Peel, D.3
-
31
-
-
0035999975
-
Application of Bayesian decomposition for analysing microarray data
-
MOLOSHOK T.D., KLEVECZ R.R., GRANT J.D., MANION F.J., SPEIER W.F., OCHS M.F. (2002). Application of Bayesian decomposition for analysing microarray data. Bioinformatics 18: 566-575.
-
(2002)
Bioinformatics
, vol.18
, pp. 566-575
-
-
Moloshok, T.D.1
Klevecz, R.R.2
Grant, J.D.3
Manion, F.J.4
Speier, W.F.5
Ochs, M.F.6
-
32
-
-
0034923013
-
On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
-
NEWTON M.A., KENDZIORSKI C.M., RICHMOND C.S., BLATTNER F.R., TSUI K.W. (2001). On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. J. Computat. Biol. 8: 37-52.
-
(2001)
J. Computat. Biol.
, vol.8
, pp. 37-52
-
-
Newton, M.A.1
Kendziorski, C.M.2
Richmond, C.S.3
Blattner, F.R.4
Tsui, K.W.5
-
33
-
-
0035699287
-
Characterization of variability in large-scale gene expression data: Implications for study design
-
NOVAK J. P., SLADEK R., HUDSON T.J. (2002). Characterization of variability in large-scale gene expression data: implications for study design. Genomics 79: 104-113.
-
(2002)
Genomics
, vol.79
, pp. 104-113
-
-
Novak, J.P.1
Sladek, R.2
Hudson, T.J.3
-
34
-
-
0035999977
-
A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
-
PAN W. (2002). A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. Bioinformatics 18: 546-554.
-
(2002)
Bioinformatics
, vol.18
, pp. 546-554
-
-
Pan, W.1
-
36
-
-
0035375137
-
Computational analysis of microarray data
-
QUAACKENBUSH J. (2001). Computational analysis of microarray data. Nature 2: 418-427.
-
(2001)
Nature
, vol.2
, pp. 418-427
-
-
Quaackenbush, J.1
-
37
-
-
0035175010
-
The Stanford microarray database
-
SHERLOCK G., HERNANDEZ-BOUSSARD T., KASARSKIS A., BINKLEY G., MATESE J.C., DWIGHT S.S., KALOPER M., WENG S., JIN H., BALL C.A., EISEN M.B., SPELLMAN P.T., BROWN P.O., BOTSTEIN D., CHERRY J.M. (2001). The Stanford microarray database. Nucleic Acids Research 29: 152-155.
-
(2001)
Nucleic Acids Research
, vol.29
, pp. 152-155
-
-
Sherlock, G.1
Hernandez-Boussard, T.2
Kasarskis, A.3
Binkley, G.4
Matese, J.C.5
Dwight, S.S.6
Kaloper, M.7
Weng, S.8
Jin, H.9
Ball, C.A.10
Eisen, M.B.11
Spellman, P.T.12
Brown, P.O.13
Botstein, D.14
Cherry, J.M.15
-
38
-
-
0035999984
-
Binary analysis and optimization-based normalization of gene expression data
-
SHMULEVICH I., ZHANG W. (2002). Binary analysis and optimization-based normalization of gene expression data. Bioinformatics 18: 555.
-
(2002)
Bioinformatics
, vol.18
, pp. 555
-
-
Shmulevich, I.1
Zhang, W.2
-
39
-
-
2442689801
-
-
University of California, Berkley, report
-
SMYTH G.K., YANG Y.H., SPEED T. (2002). Statistical issues in cDNA microarray data analysis. University of California, Berkley, report, available at http://www.stat.berkeley.edu/users/terry/zarray/Html/matt.html.
-
(2002)
Statistical Issues in CDNA Microarray Data Analysis
-
-
Smyth, G.K.1
Yang, Y.H.2
Speed, T.3
-
40
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
-
TAMAYO P., SLONIM D., MESIROV J., ZHU Q., KITAREEWAN S., DMITROVSKY E., LANDER E.S., GOLUB T.R. (1999). Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation. Proc. Natl. Acad. Sci. 96: 2907-2912.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
Lander, E.S.7
Golub, T.R.8
-
41
-
-
0034911875
-
An efficient and robust statistical modelling approach to discover differentially expressed genes using genomic expression profiles
-
THOMAS J.G., OLSON, J.M., TAPSCOTT S.J., ZHAO L.P. (2001). An efficient and robust statistical modelling approach to discover differentially expressed genes using genomic expression profiles. Genome Research 11: 1227:1236.
-
(2001)
Genome Research
, vol.11
, Issue.1227
, pp. 1236
-
-
Thomas, J.G.1
Olson, J.M.2
Tapscott, S.J.3
Zhao, L.P.4
-
44
-
-
0034960264
-
Missing value estimation methods for DNA microarrays
-
TROYANSKAYA O., CANTOR M., SHERLOCK G., BROWN P., HASTIE T., TIBSHIRANI R., BOTSTEIN D., ALTMAN R.B. (2001). Missing value estimation methods for DNA microarrays. Bioinformatics 17: 520-525.
-
(2001)
Bioinformatics
, vol.17
, pp. 520-525
-
-
Troyanskaya, O.1
Cantor, M.2
Sherlock, G.3
Brown, P.4
Hastie, T.5
Tibshirani, R.6
Botstein, D.7
Altman, R.B.8
-
45
-
-
0036191188
-
Adjustments and measures of differential expression for microarray data
-
TSODIKOV A., SZABO A., JONES D. (2002). Adjustments and measures of differential expression for microarray data. Bioinformatics 18: 251-260.
-
(2002)
Bioinformatics
, vol.18
, pp. 251-260
-
-
Tsodikov, A.1
Szabo, A.2
Jones, D.3
-
46
-
-
0034949475
-
SVDMAN - Singular value decomposition analysis of microarray data
-
WALL M.E., DYCK P.A., BRETTIN T.S. (2001). SVDMAN - singular value decomposition analysis of microarray data. Bioinformatics 17: 566-568.
-
(2001)
Bioinformatics
, vol.17
, pp. 566-568
-
-
Wall, M.E.1
Dyck, P.A.2
Brettin, T.S.3
-
47
-
-
0035433128
-
Quantitative quality control in microarray image processing and data acquisition
-
WANG X., GHOSH S., GUO S.-W. (2001). Quantitative quality control in microarray image processing and data acquisition. Nucleic Acids Research 29: e75.
-
(2001)
Nucleic Acids Research
, vol.29
-
-
Wang, X.1
Ghosh, S.2
Guo, S.-W.3
-
48
-
-
0035999974
-
Clustering gene expression data using a graph-theoretic approach: An application of minimum spanning tress
-
XU Y., OLMAN V., XU D. (2002). Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning tress. Bioinformatics 18: 536-545.
-
(2002)
Bioinformatics
, vol.18
, pp. 536-545
-
-
Xu, Y.1
Olman, V.2
Xu, D.3
-
50
-
-
0034869983
-
Normalization for cDNA microarray data
-
Microarrays: Optimal Technologies and Informatics (M.L. Bittner, Y. Chen, A.N. Dorsel, E.R. Dougherty, eds.).
-
YANG Y.H., DUDOIT S., LUU P., SPEED T.P. (2001). Normalization for cDNA microarray data. In: Microarrays: Optimal Technologies and Informatics (M.L. Bittner, Y. Chen, A.N. Dorsel, E.R. Dougherty, eds.). Volume 4266 of Proceedings of SPIE.
-
(2001)
Proceedings of SPIE
, vol.4266
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Speed, T.P.4
-
51
-
-
0034782618
-
Model-based clustering and data transformation for gene expression data
-
YEUNG K.Y., FRALEY C., MURUA A., RAFTERY A.E., RUZZO W.L. (2001a). Model-based clustering and data transformation for gene expression data. Bioinformatics 17: 977-987.
-
(2001)
Bioinformatics
, vol.17
, pp. 977-987
-
-
Yeung, K.Y.1
Fraley, C.2
Murua, A.3
Raftery, A.E.4
Ruzzo, W.L.5
-
52
-
-
0035024021
-
Validating clustering for gene expression data
-
YEUNG K.Y., HAYNOR D.R., RUZZO W.L. (2001b). Validating clustering for gene expression data. Bioinformatics 17: 309-318.
-
(2001)
Bioinformatics
, vol.17
, pp. 309-318
-
-
Yeung, K.Y.1
Haynor, D.R.2
Ruzzo, W.L.3
-
53
-
-
0034800371
-
Principal component analysis for clustering gene expression data
-
YEUNG K.Y., RUZZO W.L. (2001). Principal component analysis for clustering gene expression data. Bioinformatics 17: 763-774.
-
(2001)
Bioinformatics
, vol.17
, pp. 763-774
-
-
Yeung, K.Y.1
Ruzzo, W.L.2
|