How the all-atom simulation and the Ising-based theory reconcile with each other on the helix-coil transition

Journal of Biological Physics

Volumn 28, Issue 2, 2002, Pages 155-161

  Takano, M ^a   Nagayama, K ^a   Suyama, A ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

Glauber dynamics; Helix coil transition; Ising model; Kinetics; Molecular dynamics simulation; Relaxation; Statistical mechanics; Stretched exponential

Indexed keywords

POLYPEPTIDE;

ACCURACY; CONFERENCE PAPER; KINETICS; MOLECULAR DYNAMICS; MOLECULAR MODEL; PRIORITY JOURNAL; SIMULATION; THEORY;

EID: 0036040014     PISSN: 00920606     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1019938505594     Document Type: Conference Paper

References (14)

1. Time-dependent statistics of the Ising model
2. On the kinetics of the helix-coil transition of polypeptides in solution
3. Helix-coil transition and 1/f fluctuation in a polypeptide
4. An all atom force field for simulations of proteins and nucleic acids
5. Theory of the phase transition between helix and random coil in polypeptide chains
6. The kinetics of the helix-coil transformation of polypeptides. I
7. On the kinetics of cooperative process. Closure approximations
8. Dynamical aspects of helix-coil transitions in biopolymers. II
9. Investigating a link between all-atom model simulation and the Ising-based theory on the helix-coil transition: Equilibrium statistical mechanics
10. Molecular dynamics of a 15-residue poly-L-alanine in water: Helix formation and energetics
11. The energy landscapes and motions of proteins
12. Relaxation in biological macromolecules: Properties of some exact solutions