MHC class II genes in European wolves: A comparison with dogs

Immunogenetics

Volumn 54, Issue 7, 2002, Pages 490-500

  Seddon, Jennifer M ^a   Ellegren, Hans ^a  

^a UPPSALA UNIVERSITY   (Sweden)

Author keywords

Canis lupus; Class II MHC; DLA; Dog; Domestication; Wolf

Indexed keywords

MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2;

ALLELE; ARTICLE; BIOGEOGRAPHY; CONTROLLED STUDY; DOG; DOMESTICATION; DQA GENE; DQB GENE; DRB1 GENE; EXON; GENE; GENE SEQUENCE; GENOME; MAJOR HISTOCOMPATIBILITY COMPLEX; NONHUMAN; NUCLEOTIDE SEQUENCE; POPULATION SIZE; PRIORITY JOURNAL; WOLF;

AMINO ACID SUBSTITUTION; ANIMALS; BASE SEQUENCE; DNA; DOGS; EVOLUTION, MOLECULAR; GENES, MHC CLASS II; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; WOLVES;

CANIDAE; CANIS; CANIS FAMILIARIS; CANIS LUPUS; MAMMALIA;

EID: 0036032184     PISSN: 00937711     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00251-002-0489-x     Document Type: Article

References (47)

1. Andersson L, Mikko S (1995) Generation of MHC class II diversity by intra- and intergenic recombination. Immunol Rev 143:5-12
2. Bergström T, Gyllensten U (1995) Evolution of Mhc class II polymorphism: The rise and fall of class II gene function in primates. Immunol Rev 143:13-31
3. Brown JH, Jardetzky T, Saper MA, Samraoui B, Bjorkman PJ, Wiley DC (1988) A hypothetical model of the foreign antigen binding site of class II histocompatibility molecules. Nature 332:845-850
4. Brown JH, Jardetzky T, Gorga JC, Stern LJ, Urban RG, Strominger JL, Wiley DC (1993) Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1. Nature 364:33-39
5. Bulmer M, Wolfe KH, Sharp PM (1991) Synonymous nucleotide substitution rates in mammalian genes: Implications for the molecular clock and the relationship of mammalian orders. Proc Natl Acad Sci U S A 88:5974-5978
6. Clutton-Brock J (1999) A Natural History of Domesticated Animals. Cambridge University Press, Cambridge
7. Daszak P, Cunningham AA, Hyatt AD (2000) Emerging infectious diseases of wildlife - Threats to biodiversity and human health. Science 287:443-449
8. Ellegren H, Savolainen P, Rosen B (1996) The genetical history of an isolated population of the endangered grey wolf Canis lupus: A study of nuclear and mitochondrial polymorphisms. Philos Trans Roy Soc Lond B 351:1661-1669
9. Felsenstein J (1993) PHYLIP (Phylogeny Inference Package) Version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle
10. Grassly NC, Holmes EC (1997) A likelihood method for the detection of selection and recombination using sequence data. Mol Biol Evol 14:239-247
11. Hedrick PW, Lee RN, Parker KM (2000) Major histocompatibility complex (MHC) variation in the endangered Mexican wolf and related canids. Heredity 85:617-624
12. Hughes AL, Nei M (1988) Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335:167-170
13. Hughes AL, Nei M (1989) Nucleotide substitution at major histocompatibility complex class II loci: Evidence for overdominant selection. Proc Natl Acad Sci U S A 86:958-962
14. Kennedy LJ, Carter SD, Barnes A, Bell S, Bennett D, Ollier WER, Thomson W (1998) Nine new dog DLA-DRB1 alleles identified by sequence-based typing. Immunogenetics 48:296-301
15. Kennedy LJ, Carter SD, Barnes A, Bell S, Bennett D, Ollier B, Thomson W (1999) Interbreed variation of DLA-DRB1, DQA1 alleles and haplotypes in the dog. Vet Immunol Immunopathol 69:101-111
16. Kennedy LJ, Altet L, Angles JM, Barnes A, Carter SD, Francino O, Gerlach JA, Happ GM, Ollier WER, Polvi A, Thomson W, Wagner JL (2000a) Nomenclature for factors of the dog major histocompatibility system (DLA), 1998: first report of the ISAG DLA Nomenclature Committee. Anim Genet 31:52-61
17. Kennedy LJ, Hall LS, Carter SD, Barnes A, Bell S, Bennett D, Ollier B, Thomson W (2000b) Identification of further DLA-DRB1 and DQA1 alleles in the dog. Eur J Immunogenet 27:25-28
18. Kennedy LJ, Angles JM, Barnes A, Carter SD, Francino O, Gerlack JA, Happ GM, Ollier WER, Thomson W, Wagner JL (2000) Nomenclature for factors of the dog major histocom-patibility system (DLA), 2000: Second report of the ISAG DLA Nomenclature Committee. Anim Genet 32:193-199
19. Klein J, Satta Y, O'hUigin (1993) The molecular descent of the major histocompatibility complex. Annu Rev Immunol 11:269-295
20. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: Molecular Evolutionary Genetics Analysis software. Bioinformatics 17:1244-1245
21. McWeeney SK, Valdes AM (1999) Codon usage bias and base composition in MHC genes in humans and common chimpanzees. Immunogenetics 49:272-279
22. Mech LD (1981) The Wolf: The Ecology and Behaviour of an Endangered Species. University of Minesota Press, Minneapolis
23. Mikko S, Andersson L (1995) Low major histocompatibility complex class II diversity in European and North American moose. Proc Natl Acad Sci U S A 92:4259-4263
24. Mikko S, Spencer M, Morris B, Stabile S, Basu T, Stormont C, Andersson L (1997) A comparative analysis of MHC DRB3 polymorphism in the American bison (Bison bison). J Hered 88:499-503
25. Murray BW, White BN (1998) Sequence variation at the major histocompatibility complex DRB loci in beluga (Delphinapterus leucas) and narwhal (Monodon monoceros). Immunogenetics 48:242-252
26. Pfau RS, Van Den Bussche RA, McBee K, Lochmiller RL (1999) Allelic diversity at the Mhc-DQA locus in cotton rats (Sigmodon hispidus) and a comparison of DQA sequences within the family Muridae (Mammalia: Rodentia). Immunogenetics 49:886-893
27. Pääbo S, Irwin DM, Wilson AC (1990) DNA damage promotes jumping between templates during enzymatic amplification. J Biol Chem 265:4718-4721
28. Posada D, Crandall KA (1998) Modeltest: Testing the model of DNA substitution. Bioinformatics 14:817-818
29. Randi E, Lucchini V, Christiansen MF, Mucci N, Funk SM, Dolf G, Loeschcke V (2000) Mitochondrial DNA variability in Italian and East European wolves: Detecting the consequences of small population size and hybridization. Conserv Biol 14:464-473
30. Rozas J, Rozas R (1999) DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175
31. Sarmiento UM, Sarmiento JI, Storb R (1990) Allelic variation in the DR subregion of the canine major histocompatibility complex. Immunogenetics 32:13-19
32. Sarmiento UM, DeRose S, Sarmiento JI, Storb R (1992) Allelic variation in the DQ subregion of the canine major histocompatibility complex. I. DQA. Immunogenetics 35:416-420
33. Sarmiento UM, DeRose S, Sarmiento JI, Storb R (1993) Allelic variation in the DQ subregion of the canine major histocompatibility complex. II.DQB. Immunogenetics 37:148-152
34. Tsuda K, Kikkawa Y, Yonekawa H, Tanabe Y (1997) Extensive interbreeding occurred among multiple matriarchal ancestors during domestication of dogs: Evidence from inter- and intra-species polymorphisms in the D-loop region of mitochondrial DNA between dogs and wolves. Genes Genet Syst 72:229-238
35. Vilà C, Savolainen P, Maldonado JE, Amorim IR, Rice JE, Honeycutt RL, Crandall KA, Lundeberg J, Wayne RK (1997) Multiple and ancient origins of the domestic dog. Science 276:1687-168
36. Vilà C, Amorim IR, Leonard JA, Posada D, Castroviejo J, Petrucci-Fonseca F, Crandall KA, Ellegren H, Wayne RK (1999a) Mitochondrial DNA phylogeography and population history of the grey wolf Canis lupus. Mol Ecol 8:2089-2103
37. Vilà C, Maldonado JE, Wayne RK (1999b) Phylogenetic relationships, evolution, and genetic diversity of the domestic dog. J Hered 90:71-77
38. Wagner JL, DeRose SA, Burnett RC, Storb R (1995) Nucleotide sequence and polymorphism analysis of canine DRA cDNA clones. Tissue Antigens 45:284-287
39. Wagner JL, Burnett RC, DeRose SA, Storb R (1996a) Molecular analysis and polymorphism of the DLA-DQA gene. Tissue Antigens 48:199-204
40. Wagner JL, Burnett RC, Storb R (1996b) Molecular analysis of the DLA DR region. Tissue Antigens 48:549-553
41. Wagner JL, Burnett RC, Works JD, Storb R (1996c) Molecular analysis of DLA-DRBB1 polymorphism. Tissue Antigens 48: 554-561
42. Wagner JL, Works JD, Storb R (1998) DLA-DRB1 and DLA-DQB1 histocompatibility typing by PCR-SSCP and sequencing. Tissue Antigens 52:397-401
43. Wagner JL, Burnett RC, Storb R (1999) Organization of the canine major histocompatibility complex: Current perspectives. J Hered 90:35-38
44. Walt JM van der, Nel LH, Hoelzel AR (2001) Characterization of major histocompatibility complex DRB diversity in the endemic South African antelope Damaliscus pygargus: A comparison in two subspecies with different demographic histories. Mol Ecol 10:1679-1688
45. Wayne RK, Van Valkenburgh B, O'Brien SJ (1991) Molecular distance and divergence time in carnivores and primates. Mol Biol Evol 8:297-319
46. Wayne RK, Lehman N, Allard MW, Honeycutt RL (1992) Mitochondrial DNA variability of the gray wolf: Genetic consequences of population decline and habitat fragmentation. Conserv Biol 6:559-569
47. Zajc I, Mellersh CS, Sampson J (1997) Variability of canine microsatellites within and between different dog breeds. Mamm Genome 8:182-185