Deriving evolutionary relationships among populations using microsatellites and (δμ)2: All loci are equal, but some are more equal than others ...

Genetics

Volumn 161, Issue 3, 2002, Pages 1339-1347

  Landry, Pierre Alexandre ^a   Koskinen, Mikko T ^a   Primmed, Craig R ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; EVOLUTION; GENE LOCUS; GENE MUTATION; NONHUMAN; PHYLOGENETIC TREE; POPULATION GENETICS; PRIORITY JOURNAL; STATISTICAL ANALYSIS; ANIMAL; BIOLOGICAL MODEL; CLASSIFICATION; GENETICS; MOLECULAR EVOLUTION; PHYLOGENY; SALMONID;

ANIMAL; EVOLUTION, MOLECULAR; GENETICS, POPULATION; MICROSATELLITE REPEATS; MODELS, GENETIC; PHYLOGENY; SALMONIDAE; SUPPORT, NON-U.S. GOV'T; ANIMALS;

SALMONIDAE; THYMALLUS THYMALLUS;

EID: 0036021411     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (60)

1. Complex evolution of a salmonid microsatellite locus and its consequences in inferring allelic divergence from size information
2. Microsatellites can he misleading: An empirical and simulation study
3. High resolution of human evolutionary trees with polymorphic microsatellites
4. Mutation rate in human microsatellites: Influence of the structure and length of the tandem repeat
5. Microsatellite and mitochondrial DNA assessment of population structure and stocking effects in Arctic charr Salvelinus alpinus (Teleostei: Salmonidae) from central Alpine lakes
6. Short tandem repeat polymorphism evolution in humans
7. Random cladistics
8. Phylogenetic analysis: Models and estimation procedures
9. 2 genetic distance for 213 human microsatellite markers
10. Mutability of microsatellites developed for the ant Camponotus consobrinus
11. Heterogeneity of microsatellite mutations within and between loci and implications for human demographic histories
12. Microsatellite mutations in the germline: Implications for evolutionary inference
13. Microsatellites and minisatellites for molecular ecology: Theoretical and empirical considerations
14. Size homoplasy and mutational processes of interrupted microsatellites in two bee species, Apis mellifera and Bombus terrestris (Apidae)
15. Could a cladogram this short have arisen by chance alone? On permutation tests for cladistic structure
16. Microsatellite allele frequencies in humans and chimpanzees, with implications for constraints on allele size
17. Genetic absolute dating based on microsatellites and the origin of modern humans
18. An evaluation of genetic distances for use with microsatellite loci
19. The use of microsatellite variation to infer population structure and demographic history in a natural model system
20. Rst Calc: A collection of computer programs for calculating unbiased estimates of genetic differentiation and determining their significance for microsatellite data
21. Patterns of extensive genetic differentiation and variation among European harbor seals (Phoca vitulina vitulina) revealed using microsatellite DNA polymorphisms
22. Conservation of locus specific microsatellite variability across species: A comparison of two Drosophila sibling species D. melanogaster and D. simulans
23. Microsatellite evolution in modern humans: A comparison of two data sets from the same populations
24. Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome, as revealed by direct observation in father/son pairs
25. Dynamics of repeat polymorphisms under a forward-backward mutation model: Within- and between-population variability at microsatellite loci
26. High throughput analysis of 17 microsatellite loci in grayling (Thymallus spp. Salmonidae)
27. Genetic lineages and postglacial colonization of grayling (Thymallus thymallus, Salmonidae) in Europe, as revealed by mitochondrial DNA analyses
28. Microsatellite data resolve phylogeographic patterns in European grayling, Thymallus thymallus, Salmonidae
29. Estimating phylogenies from lacunose distance matrices: Additive is superior to ultrametric estimation
30. How to validate phylogenetic trees: A stepwise procedure
31. An evaluation of evolutionary constraints on microsatellite loci using null alleles
32. Accuracy of estimated phylogenetic trees from molecular data
33. The model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a genetic population
34. The use of tree comparison metrics
35. Microsatellite variation and the differentiation of modern humans
36. Microsatellite behavior with range constraints: Parameter estimation and improved distances for use in phylogenetic reconstruction
37. Directional evolution in germline microsatellite mutations
38. Unravelling the processes of microsatellite evolution through analysis of germline mutations in barn swallows Hirundo rustica
39. Phylogenetic analysis of the tribe Bovini using microsatellites
40. Comparison of phylogenetic trees
41. Objections to bootstrapping phylogenies: A critique
42. Evolutionary dynamics of microsatellite DNA
43. High mutation rate of a long microsatellite allele in Drosophila melanogaster provides evidence for allele-specific mutation rates
44. VNTR allele frequency distributions under the stepwise mutation model: A computer simulation approach
45. A novel measure of genetic distance for highly polymorphic tandem repeat loci
46. A measure of population subdivision based on microsatellite allele frequencies
47. Distributions of tree comparison metrics - Some new results
48. Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA
49. A genetic assessment of single versus double origin of landlocked Atlantic salmon (Salmo salar) from Lake Saint-Jean, Québec, Canada
50. Allele frequencies at microsatellite loci: The stepwise mutation model revisited
51. Microsatellite genetic distances between oceanic populations of the humpback whale (Megaptera novaeangliae)
52. Mutation of human short tandem repeats
53. Data, methods and assumptions in phylogenetic inferences
54. Estimating divergence time with the use of microsatellite genetic distances: Impacts of population growth and gene flow
55. Microsatellite variability and genetic distances
56. Human population expansion and microsatellite variation