Nested clade analysis and the genetic evidence for population expansion in the phylogeography of the golden-striped salamander, Chioglossa lusitanica (Amphibia: Urodela)

Heredity

Volumn 88, Issue 1, 2002, Pages 66-74

  Alexandrino, J ^a   Arntzen, J W ^a,b   Ferrand, N ^a  

^a UNIVERSITY OF PORTO   (Portugal)

^b NATURALIS BIODIVERSITY CENTER   (Netherlands)

Author keywords

Chioglossa lusitanica; Golden striped salamander; MtDNA phylogeny; Nested clade analysis; Population expansion; Population structure vs population history

Indexed keywords

CYTOCHROME B;

AMPHIBIA; ANIMAL; ARTICLE; CLASSIFICATION; EVOLUTION; GENETICS; HAPLOTYPE; MOLECULAR EVOLUTION; PHYLOGENY; PORTUGAL; SPAIN;

ANIMALS; CYTOCHROME B GROUP; EVOLUTION; EVOLUTION, MOLECULAR; HAPLOTYPES; PHYLOGENY; PORTUGAL; SPAIN; URODELA;

AMPHIBIAN; CLADISTICS; PHYLOGENY; POPULATION GENETICS; RANGE EXPANSION; ZOOGEOGRAPHY;

EUROPE;

CHIOGLOSSA LUSITANICA;

EID: 0036008419     PISSN: 0018067X     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.hdy.6800010     Document Type: Article

References (33)

1. Genetic subdivision, glacial refugia and postglacial recolonization in the golden-striped salamander, Chioglossa lusitanica (Amphibia: Urodela)
2. Ecological observations on Chioglossa lusitanica (Caudata, Salamandridae)
3. Speedy salamanders: Sedentariness and migration of Chioglossa lusitanica
4. Chioglossa lusitanica Bocage, 1864 - Goldstreifensalamander
5. Mitochondrial DNA and human evolution
6. Root probabilities for intraspecific gene trees under neutral coalescent theory
7. TCS: A computer program to estimate gene genealogies
8. Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction
9. Considering evolutionary processes in conservation biology
10. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
11. Statistical neutrality of mutations against population growth, hitchhiking and background selection
12. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
13. How often are polymorphic restriction sites due to single mutation?
14. Maximum likelihood estimation of population growth rates based on the coalescent
15. Measuring gene flow among populations having high levels of genetic fragmentation
16. Evolutionary relationships within the Ensatina escholtzii complex confirm the ring species interpretation
17. A comparison of alternative strategies for estimating gene flow from genetic markers
18. GeoDis: A program for the cladistic nested analysis of the geographical distribution of genetic haplotypes
19. The complete nucleotide sequence of the Xenopus laevis mitochondrial genome
20. DnaSP, Version 3: An integrated program for molecular population genetics and molecular evolution analysis
21. Estimating levels of gene flow in natural populations
22. MtDNA phylogeography of the California newt, Taricha torosa (Caudata, Salamandridae)
23. Biogeography of the golden-striped salamander, Chioglossa lusitanica: A field survey and spatial modelling approach
24. Contingency tests of neutrality using intra/interspecific gene trees: The rejection of neutrality for the evolution of the mitochondrial cytochrome oxidase II gene in hominoid primates
25. Nested clade analysis of phylogeographic data: Testing hypotheses about gene flow and population history
26. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila
27. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. III. Cladogram estimation
28. Separating population structure from population history: A cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum
29. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination
30. On the number of segregating sites in genetical models without recombination
31. Evolution in Mendelian populations
32. Population genetics and evolution of animal mitochondrial DNA