Proteomics and a future generation of plant molecular biologists

Plant Molecular Biology

Volumn 48, Issue 1-2, 2002, Pages 143-154

  Roberts, Justin K M ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Functional genomics; Gene expression; Mass spectrometry; Post translational modification protein identification; Proteomics

Indexed keywords

ENVIRONMENTAL IMPACT; GENETIC ENGINEERING; MASS SPECTROMETRY; PROTEINS;

PROTEOMICS;

PLANTS (BOTANY);

PROTEOME; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; FORECASTING; GENETICS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METABOLISM; METHODOLOGY; MOLECULAR BIOLOGY; MOLECULAR GENETICS; PLANT; RESEARCH; REVIEW;

AMINO ACID SEQUENCE; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; FORECASTING; MOLECULAR BIOLOGY; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; PLANTS; PROTEOME; RESEARCH; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 0036008020     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1013736322130     Document Type: Article

References (68)

1. Current problems and technical solutions in protein biochemistry
2. The cell as a collection of protein machines: Preparing the next generation of molecular biologists
3. Mass spectrometry. An essential tool in proteome analysis
4. Structural and functional organization of ADP-ribosylation factor (ARF) proteins
5. The histone modification circus
6. Nomenclature for peptide fragment ions (positive ions)
7. AvrPto-dependent Pto-interacting proteins and AvrPto-interacting proteins in tomato
8. Automatic poisson peak harvesting for high throughput protein identification
9. Patterns of protein synthesis and tolerance of anoxia in root tips of maize seedlings acclimated to a low-oxygen environment, and identification of proteins by mass spectrometry
10. Role of accurate mass measurement (± 10 ppm) in protein identification strategies employing MS or MS/MS and database searching
11. Resolution and identification of the protein components of the photosystem II antenna system of higher plants by reversed-phase liquid chromatography with electrospray-mass spectrometric detection
12. Functional implications of protein isoprenylation in plants
13. Organic solvent extraction as a versatile procedure to identify hydrophobic chloroplast membrane proteins
14. Metabolite profiling for plant functional genomics
15. Structural characterization of two aquaporins isolated from native spinach leaf plasma membranes
16. Alternative splicing: Increasing diversity in the proteomic world
17. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
18. Correlation between protein and mRNA abundance in yeast
19. Measuring gene expression by quantitative proteome analysis
20. Annotation of glycoproteins in the SWISS-PROT database
21. A peroxidase homologue and novel plastocyanin located by proteoraics to the Arabidopsis chloroplast thylakoid lumen
22. Identification of a nucleic acid binding domain in eukaryotic initiation factor elFiso4G from wheat
23. Mass spectrometric characterization of oat phytochrome A: Isoforms and posttranslational modifications
24. Proteomics on full-length membrane proteins using mass spectrometry
25. Regulation of abscisic acid-induced stomatal closure and anion channels by guard cell AAPK kinase
26. Direct analysis of protein complexes using mass spectrometry
27. Histone acetylation: Lessons from the plant kingdom
28. What exactly are genomes, genotypes and phenotypes? And what about phenomes?
29. Use of mass spectrometry-derived data to annotate nucleotide and protein sequence databases
30. Modulation of GT-1 DNA-binding activity by calcium-dependent phosphorylation
31. New clue to how the cell controls its proteins
32. Secondary structure and posttranslational modifications of the leucine-rich repeat protein PGIP (polygalacturonase-inhibiting protein) from Phaseolus vulgaris
33. Multiple cyclin-dependent kinase complexes and phosphatases control G2/M progression in alfalfa cells
34. Advances in instrumentation in liquid chromatography-mass spectrometry and related liquid-introduction techniques
35. Accurate quantitation of protein expression and site-specific phosphorylation
36. Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome
37. Recombinant brassinosteroid insensitive 1 receptor-like kinase autophosphorylates on serine and threonine residues and phosphorylates a conserved peptide motif in vitro
38. The challenges of in silico biology
39. A thousand points of light: The application of fluorescence detection technologies to two-dimensional gel electrophoresis and proteomics
40. Proteomics of the chloroplast: Systematic identification and targeting analysis of lumenal and peripheral thylakoid proteins
41. Compression wood-responsive proteins in developing xylem of maritime pine (Pinus pinasterait)
42. A proteomic analysis of organelles from Arabidopsis thaliana
43. Phytochrome-interacting factors
44. Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems
45. Analysis of the plant proteome
46. Membrane proteomics: Use of additive main effects with multiplicative interaction model to classify plasma membrane proteins according to their solubility and electrophoretic properties
47. Protein arrays step out of DNA's shadow
48. Metabolite profiling of sesquiterpene lactones from Lactuca species. Major latex components are novel oxalate and sulfate conjugates of lactucin and its derivatives
49. Molecular characterization of Vibrio parahaemolyticus vSGLT: A model for sodium-coupled sugar cotransporters
50. Proteomics of the chloroplast: Experimentation and prediction
51. Challenges and prospects of plant proteomics
52. Mass spectrometric resolution of reversible protein phosphorylation in photosynthetic membranes of Arabidopsis thaliana
53. Proteasomal proteomics: Identification of nucleotide-sensitive proteasome-interacting proteins by mass spectrometric analysis of affinity-purified proteasomes
54. Large-scale analysis of the yeast proteome by multidimensional protein identification technology
55. Electrospray-ionization mass spectrometry of intact intrinsic membrane proteins
56. Mass spectrometric analysis of proteins
57. Molecular characterization of Vibrio parahaemolyticus vSGLT: A model for sodium-coupled sugar cotransporters
58. Phosphoserine/threonine binding domains. You can't pSERious?
59. On the co-linearity of gene structure and protein structure
60. A systematic approach to the analysis of protein phosphorylation
61. High performance liquid chromatography-electrospray mass spectrometry for the simultaneous resolution and identification of intrinsic thylakoid membrane proteins