Construction of a genetic linkage map of the model legume Lotus japonicus using an intraspecific F2 population

DNA Research

Volumn 8, Issue 6, 2001, Pages 301-310

  Hayashi, Masaki ^a   Miyahara, Akira ^a   Sato, Shusei ^b   Kato, Tomohiko ^b   Yoshikawa, Makoto ^c   Taketa, Michiko ^c   Hayashi, Makoto ^c   Pedrosa, Andrea ^d   Onda, Ryutaku ^a   Imaizumi Anraku, Haruko ^e   Bachmair, Andreas ^d   Sandal, Niels ^f   Stougaard, Jens ^f   Murooka, Yoshikatsu ^c   Tabata, Satoshi ^b   Kawasaki, Shinji ^e   Kawaguchi, Masayoshi ^g   Harada, Kyuya ^a  

^a CHIBA UNIVERSITY   (Japan)

^b KAZUSA DNA RESEARCH INSTITUTE   (Japan)

^c OSAKA UNIVERSITY   (Japan)

^d UNIVERSITY OF VIENNA   (Austria)

^e NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^f AARHUS UNIVERSITY   (Denmark)

^g UNIVERSITY OF TOKYO   (Japan)

Author keywords

AFLP; dCAPS; FISH; Linkage map; Lotus japonicus; SSR; Translocation

Indexed keywords

FABACEAE; LOTUS CORNICULATUS VAR. JAPONICUS; LOTUS FILICAULIS;

ARTICLE; BIOLOGICAL MODEL; CHROMOSOME MAP; FLUORESCENCE IN SITU HYBRIDIZATION; GENE; GENETIC LINKAGE; GENETIC MARKER; GENETICS; GROWTH, DEVELOPMENT AND AGING; LOTUS; MITOSIS; PHYSIOLOGY; PLANT; RANDOM AMPLIFIED POLYMORPHIC DNA; RESTRICTION FRAGMENT LENGTH POLYMORPHISM;

CHROMOSOME MAPPING; GENES, PLANT; GENETIC MARKERS; IN SITU HYBRIDIZATION, FLUORESCENCE; LINKAGE (GENETICS); LOTUS; MITOSIS; MODELS, BIOLOGICAL; PLANT COMPONENTS; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE;

EID: 0035981221     PISSN: 13402838     EISSN: None     Source Type: Journal    
DOI: 10.1093/dnares/8.6.301     Document Type: Article

References (21)

1. Handberg, K. and Stougaard, J. 1992, Lotus japonicus, an autogamous, diploid legume species for classical and molecular genetics, Plant J., 2, 487-496.
2. Ito, M., Miyamoto, J., Mori, Y. et al. 2000, Genome and Chromosome Dimensions of Lotus japonicus, J. Plant Res., 113, 435-442.
3. Kawasaki, S. and Murakami, Y. 2000, Genome Analysis of Lotus japonicus, J. Plant Res., 113, 497-506.
4. Stiller, J., Martirani, L., Tuppale, S., Chian, R.-J., Chiurazzi, M., and Gresshoff, P. M. 1997, High frequency transformation and regeneration of transgenic plant in the model legume Lotus japonicus, J. Exp. Bot., 48, 1357-1365.
5. Jiang, Q. and Gresshoff, P. M. 1997, Classical and Molecular Genetics of the Model Legume Lotus japonicus, Mol. Plant-Microbe. Interac., 10, 59-68.
6. Kawaguchi, M., Motomura, T., Imaizumi-Anraku, H., Akao, S., and Kawasaki, S. 2001, Providing the basis for genomics in Lotus japonicus: the accessions Miyakojima and Gifu are appropriate crossing partners for genetic analyses, Mol. Genet. Genomics, 266, 157-166.
7. Vos, P., Rogers, R., Bleeker, M. et al. 1995, AFLP: a new technique for DNA fingerprinting, Nucleic Acids Res., 23, 4407-4414.
8. Sato, S., Kaneko, T., Nakamura, Y. et al. 2001. Structural analysis of a Lotus japonicus Genome. I. Sequence features and mapping of fifty-six TAG clones which cover the 5.4 Mbp regions of the genome, DNA Res., 8, 311-318.
9. Lander, E. S., Green, P., Abrahamson, J. et al. 1987, MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations, Genomics, 1, 174-181.
10. Lincoln, S. E., Daly, M. J., and Lander, E. S. 1992, Construction genetic maps with MAPMAKER/EXP 3.0, Whitehead Institute Technical Report, 3rd Ed., Whitehead Institute, Cambridge, Massachusetts.
11. Wanzenböck, E.-M., Schöfer, C., Schweizer, D., and Bachmair, A. 1997, Ribosomal transcription units integrated via T-DNA transformation associate with the nucleolus and do not require upstream repeat sequences for activity in Arabidopsis thaliana, Plant J., 11, 1007-1016.
12. Pedrosa, A., Jantsch, M. F., Moscone, E. A., Ambros. P. F., and Schweizer, D. 2001, Characterization of pericentromeric and sticky intercalary heterochromatin in Ornithogalum longibracteatum (Hyacinthaceae), Chromosoma, 110, 203-213.
13. Heslop-Harrison, J. S., Schwazarcher, T., Anamthawat-Jönsson, K., Leitch, A. R., Shi, M., and Leitch, I. J. 1991, In situ hybridization with automated chromosome denaturation, Technique, 3, 109-115.
14. Zwick, M. S., Hanson, R. E., McKnight, T. D. et al. 1997, A rapid procedure for isolation of Cot-1 DNA from plants, Genome, 40, 138-142.
15. Heslop-Harrison, J. S., Harrison, G. E., and Leitch, I. J. 1992, Reprobing of DNA: DNA in situ hybridization preparations, Trends in Genet., 8, 372-373.
16. Mackill, D. J., Zhang, Z., Redona, E. D., and Colowit, P. M. 1996, Level of polymorphism and genetic mapping of AFLP markers in rice, Genome, 39, 969-977.
17. Keim, P., Schupp, J. M., Travis, S. E. et al. 1997, A high-density soybean genetic map based on markers, Crop Sci., 37, 537-543.
18. Becker, J., Vos-, P., Kuiper, M., Salamini, F., and Heun, M. 1995, Combined mapping of AFLP and RFLP markers in barley, Mol. Gen. Genet., 249, 65-73.
19. Alonso-Blanco, C., Peeters, A. J., Koornneef, M. et al. 1998. Development of an AFLP based linkage map of Ler, Col and Cvi Arabidopsis thaliana ecotypes and construction of a Ler/Cvi recombinant inbred line population, Plant J., 14, 259-271.
20. Qi, X., Stam, P., and Lindhout, P. 1998, Use of locus-specific AFLP markers to construct a high density molecular map in barley, Theor. Appl. Genet., 96, 376-384.
21. Schauser, L., Roussis, A., Stiller, J., and Stougaard, J. 1999. A plant regulator controlling development of symbiotic root nodules, Nature, 402, 191-195.