Comparison of sequences of cDNA clones obtained from oligo-capping cDNA libraries with those from UniGene

DNA Research

Volumn 8, Issue 6, 2001, Pages 255-262

  Nishikawa, Tetsuo ^a,b   Ota, Toshio ^a,c   Kawai, Yuri ^a   Ishii, Shizuko ^a   Saito, Kaoru ^a   Yamamoto, Jun Ichi ^a   Wakamatsu, Ai ^a   Ozawa, Masashi ^a   Suzuki, Yutaka ^d   Sugano, Sumio ^d   Isogai, Takao ^a  

^a Helix Research Institute   (Japan)

^b HITACHI LTD   (Japan)

^c KYOWA HAKKO KOGYO CO LTD   (Japan)

^d UNIVERSITY OF TOKYO   (Japan)

Author keywords

Database; ESTs; Full length cDNA; Oligo capping; UniGene

Indexed keywords

CAPPED RNA; COMPLEMENTARY DNA;

ALGORITHM; ANIMAL; ARTICLE; COMPARATIVE STUDY; COMPUTER PROGRAM; EXPRESSED SEQUENCE TAG; FACTUAL DATABASE; GENE LIBRARY; GENETICS; HUMAN;

ALGORITHMS; ANIMALS; DATABASES, FACTUAL; DNA, COMPLEMENTARY; EXPRESSED SEQUENCE TAGS; GENE LIBRARY; HUMANS; RNA CAPS; SOFTWARE;

EID: 0035981210     PISSN: 13402838     EISSN: None     Source Type: Journal    
DOI: 10.1093/dnares/8.6.255     Document Type: Article

References (15)

1. Goodman, K. 1998, The human genome project aims for 2003, Genome Res., 8, 997-999.
2. Wadman, M. 1998, Human genome deadline cut by two years, Nature, 395, 207.
3. Strausberg, R. L., Feingold, E. A., Klausner, R. D., and Collins, F. S. 1999, The mammalian gene collection, Science, 286, 455-457.
4. Boguski, M. S., Lowe, T. M., and Tolstoshev, C. M. 1993, dbEST-database for "expressed sequence tags," Nat Genet, 4, 332-323.
5. Murakawa, K., Matsubara, K., Fukushima, A., Yoshii, J., and Okubo, K. 1994, Chromosomal assignments of 3′-directed partial cDNA sequences representing novel genes expressed in granulocytoid cells, Genomics, 23, 379-389.
6. Schuler, G. D., Boguski, M. S., Stewart, E. A. et al. 1996, A gene map of the human genome, Science, 274, 540-546.
7. Maruyarna, K. and Sugano, S. 1994, Oligo-capping: a simple method to replace the, cap structure of eukaryotic mRNAs with oligoribonucleotides, Gene, 138, 171-174.
8. Kato, S., Sekine, S., Oh, S. W. et al. 1994, Construction of a human full-length cDNA bank, Gene, 150, 243-250.
9. Carninci, P., Kvam, C., Kitamura, A. et al. 1996, High-efficiency full-length cDNA cloning by biotinylated cap trapper, Genomics, 37, 327-336.
10. Ota, T., Nishikawa, T., Ishii, S. et al. 1998, Full Length cDNA Project Toward Functional Genomics: Analysis of Clones from Oligo-cap Libraries, Genome Mapping, Sequencing & Biology, 166.
11. Nishikawa, T., Ota, T., Salamov, A. et al. 1998, Database and Analysis System of cDNA Clones obtained from Full-length enriched cDNA Library, Genome Mapping, Sequencing & Biology, 160.
12. Boguski, M. S. and Schuler, G. D. 1995, ESTablishing a human transcript map, Nature Genetics, 10, 369-371.
13. Makoto Hirosawa, et al. 2000, Detection of Spurious Interruptions of Protein-Coding Regions in Cloned cDNA Sequences by GeneMark Analysis, Genome Research, 10, 1333-1341.
14. Altschul, S. F. et al. 1990, Basic local alignment search tool, J. Mol. Biol., 215, 403.
15. Gubler, U. and Hoffmann, B. J. 1983, A simple and very efficient method for generating cDNA libraries, Gene, 25, 263-269.