Dimerization of the 3′UTR of bicoid mRNA involves a two-step mechanism

Journal of Molecular Biology

Volumn 313, Issue 3, 2001, Pages 511-524

  Wagner, Céline ^a   Palacios, Isabel ^b   Jaeger, Luc ^a   St Johnston, Daniel ^b   Ehresmann, Bernard ^a   Ehresmann, Chantal ^a   Brunel, Christine ^a  

^a INST DE BIOL MOLEC ET CELLULAIRE   (France)

^b WELLCOME CRC INSTITUTE   (United Kingdom)

Author keywords

bcd mRNA; RNA dimerization; RNA localization; RNA protein interactions; Staufen

Indexed keywords

ANTISENSE OLIGONUCLEOTIDE; CIS ACTING ELEMENT; MESSENGER RNA; PROTEIN BCD; TRANS ACTING FACTOR; TRANS ACTING FACTOR STAUFEN; UNCLASSIFIED DRUG; BICOID PROTEIN, DROSOPHILA; DROSOPHILA PROTEIN; HOMEODOMAIN PROTEIN; OLIGONUCLEOTIDE; RNA BINDING PROTEIN; STAUFEN PROTEIN, DROSOPHILA; TRANSACTIVATOR PROTEIN;

3' UNTRANSLATED REGION; ARTICLE; BASE PAIRING; CONTROLLED STUDY; DIMERIZATION; DROSOPHILA; EMBRYO; KINETICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN LOCALIZATION; THERMODYNAMICS; ANIMAL; BIOLOGICAL MODEL; CHEMISTRY; CONFORMATION; DROSOPHILA MELANOGASTER; GENE; GENETICS; METABOLISM; MUTATION; NUCLEOTIDE SEQUENCE; PRENATAL DEVELOPMENT; PROTEIN TRANSPORT; REGULATORY SEQUENCE; TRANSPORT AT THE CELLULAR LEVEL;

3' UNTRANSLATED REGIONS; ANIMALS; BASE PAIRING; BASE SEQUENCE; BIOLOGICAL TRANSPORT; DIMERIZATION; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; GENES, INSECT; HOMEODOMAIN PROTEINS; KINETICS; MODELS, BIOLOGICAL; MUTATION; NUCLEIC ACID CONFORMATION; OLIGONUCLEOTIDES; PROTEIN TRANSPORT; REGULATORY SEQUENCES, NUCLEIC ACID; RNA-BINDING PROTEINS; THERMODYNAMICS; TRANS-ACTIVATORS;

EID: 0035955296     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2001.5057     Document Type: Article

References (50)

1. Control of ColE1 plasmid replication: The process of binding of RNA I and the primer transcript
2. Control of replication of plasmid R1: Kinetics of in vitro interaction between the antisense RNA, CopA, and its target, CopT
3. Mechanism of binding of the antisense and target RNAs involved in the regulation of IncB plasmid replication
4. Structural basis for binding of the plasmid ColIb-P9 antisense Inc RNA to its target RNA with the 5′-rUUGGCG-3′ motif in the loop sequence
5. Structural analysis of late intermediate complex formed between plasmid ColIb-P9 Inc RNA and its target RNA. How does a single antisense RNA repress translation of two genes at different rates?
6. Structural basis for the specificity of the initiation of HIV-1 reverse transcription
7. Role of the DIS hairpin in replication of human immunodeficiency virus type 1
8. Requirement for kissing-loop-mediated dimerization of human immunodeficiency virus RNA
9. Evidence that a kissing loop structure facilitates genomic RNA dimerisation in HIV-1
10. A dual role of the putative RNA dimerization initiation site of human immunodeficiency virus type I in genomic RNA packaging and proviral DNA synthesis
11. Function of hexameric RNA in packaging of bacteriophage phi 29 DNA in vitro
12. Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportation
13. A dimer as a building block in assembling RNA. A hexamer that gears bacterial virus phi29 DNA-translocating machinery
14. RNA-RNA interaction is required for the formation of specific bicoid mRNA 3′ UTR-STAUFEN ribonucleoprotein particles
15. Staufen, a gene required to localize maternal RNAs in the Drosophila egg
16. Distinct roles of two conserved Staufen domains in oskar mRNA localization and translation
17. Staufen protein associates with the 3′UTR of bicoid mRNA to form particles that move in a microtubule-dependent manner
18. Cis-acting sequences responsible for anterior localization of bicoid mRNA in Drosophila embryos
19. bicoid mRNA localization signal: Phylogenetic conservation of function and RNA secondary structure
20. Molecular analysis of the bicoid gene from Drosophila pseudoobscura: Identification of conserved domains within coding and noncoding regions of the bicoid mRNA
21. A loop-loop "kissing" complex is the essential part of the dimer linkage of genomic HIV-1 RNA
22. Complexes formed by complementary RNA stem-loops. Their formations, structures, and interactions with ColE1 Rom protein
23. GFP in Drosophila
24. The mago nashi gene is required for the polarisation of the oocyte and the formation of perpendicular axes in Drosophila
25. Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection: Comparison with in vivo evolution
26. TectoRNA: Modular assembly units for the construction of RNA nano- objects
27. Dimerization of HIV-1 genomic RNA of subtypes A and B: RNA loop structure and magnesium binding
28. Structure of the dimer initiation complex of HIV-1 genomic RNA
29. Solution studies on the dimerization initiation site (DIS) of HIV-1 genomic RNA
30. Mutational analysis of the bipartite dimer linkage structure of human immunodeficiency virus type 1 genomic RNA
31. Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro
32. Non-canonical interactions in a kissing loop complex: The dimerization initiation site of HIV-1 genomic RNA
33. Mechanisms of inhibition of in vitro dimerization of HIV type I RNA by sense and antisense oligonucleotides
34. Convergence of natural and artificial evolution on an RNA loop-loop interaction: The HIV-1 dimerization initiation site
35. A 19-nucleotide sequence upstream of the 5′ major splice donor site is part of the dimerization domain of human immunodeficiency virus 1 genomic RNA
36. Dimerization of HIV-1lai RNA at low ionic strength
37. lai RNA dimerization by converting a transient loop-loop complex into a stable dimer
38. Characterization of human immunodeficiency virus type 1 dimeric RNA from wild-type and protease-defective virions
39. An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment
40. Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA
41. RNA recognition by a Staufen double-stranded RNA-binding domain
42. Sex and recombination in retroviruses
43. First glimpses at structure-function relationships of the nucleocapsid protein of retroviruses
44. Roles of nucleocapsid cysteine arrays in retroviral assembly and replication: Possible mechanisms in RNA encapsidation
45. The human immunodeficiency virus type 1 encapsidation site is a multipartite RNA element composed of functional hairpin structures
46. Characterization of the small RNA of the bacteriophage phi29 DNA packaging machine
47. In vitro selection of bacteriophage phi29 prohead RNA aptamers for prohead binding
48. RNA localization in development
49. Redundant RNA recognition events in bicoid mRNA localization