E. coli 5′-Nucleotidase undergoes a hinge-bending domain rotation resembling a ball-and-socket motion

Journal of Molecular Biology

Volumn 309, Issue 1, 2001, Pages 255-266

  Knöfel, Thomas ^a   Sträter, Norbert ^a  

^a FREIE UNIVERSITÄT BERLIN   (Germany)

Author keywords

Domain closure; Dynamic domains; Hinge bending domain motion; Normal mode analysis; Protein dynamics

Indexed keywords

5' NUCLEOTIDASE; LIGAND; LYSINE; WATER;

ARTICLE; COMPLEX FORMATION; CONFORMATIONAL TRANSITION; CRYSTAL STRUCTURE; ESCHERICHIA COLI; LIGAND BINDING; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; STRUCTURE ANALYSIS;

EID: 0035946952     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2001.4657     Document Type: Article

References (49)

1. Structural domains in proteins and their role in the dynamics of protein function
2. Structural and functional aspects of domain motion in proteins
3. Domain motions in proteins
4. Structural mechanisms for domain movements in proteins
5. Structural principles governing domain motions in proteins
6. Hinge-bending and folding
7. Collective protein dynamics in relation to function
8. Structure of a triclinic ternary complex of horse liver alcohol dehydrogenase at 2.9 Å resolution
9. Three-dimensional structure of isonicotinimidylated liver alcohol dehydrogenase
10. X-ray structure refinement and comparison of three forms of mitochondrial aspartate amino-transferase
11. Domain closure in mitochondrial aspartate amino-transferase
12. 2.2 Å refined crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MnATP and a peptide inhibitor
13. Structure of the mammalian catalytic subunit of cAMP-dependent protein kinase and a inhibitor peptide displays an open conformation
14. Calmodulin structure refined at 1.7 Å resolution
15. Target enzyme recognition by calmodulin: 2.4 Å structure of a calmodulin-peptide complex
16. The three-dimensional structure of an intact monoclonal antibody for canine lymphoma
17. Crystallographic refinement and atomic models of two different forms of citrate synthase at 2.7 and 1.7 Ångstroms resolution
18. Structure of a complex of catabolite gene activator protein and cyclic AMP refined at 2.5 Å resolution
19. Refined structure of dimeric diptheria toxin at 2.0 resolution
20. Refined structure of monomeric diptheria toxin at 2.3 Å resolution
21. Sequencing a protein by X-ray crystallography. II. Refinement of yeast hexokinase B coordinates and sequence at 2.1 Å resolution
22. Glucose induced conformational change in yeast hexokinase
23. Three-dimensional structures of the periplasmatic lysine/arginine/ornithine-binding protein with and without a ligand
24. Crystallographic evidence of a large ligand-induced hinge-twist motion between the two domains of the maltodextrin binding protein involved in active transport and chemotaxis
25. The 2.3 Å resolution structure of the maltose or maltodextrin-binding protein, a primary receptor of bacterial active transport and chemotaxis
26. Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme
27. Structure of tomato bushy stunt virus: The virus particle at 2.9 Å resolution
28. The 5′-nucleotidase of Escherichia coli. Purification and properties
29. 5′-Nucleotidase: Molecular structure and functional aspects
30. Biochemistry, localization and functional roles of ecto-nucleotidases in the nervous system
31. Release of soluble nucleotidases: A novel mechanism for neurotransmitter inactivation?
32. X-ray structure of the Escherichia coli periplasmic 5′-nucleotidase containing a dimetal catalytic site
33. Systematic analysis of domain motions in proteins from conformational change: New results on citrate synthase and T4 lysozyme
34. Twists in catalysis: Alternating conformations of Escherichia coli thioredoxin reductase
35. A mutant T4 lysozyme displays five different crystal conformations
36. Mechanism of hydrolysis of phosphate esters by the dimetal center of 5′-nucleotidase based on crystal structures
37. GOR method for predicting secondary structure from amino acid sequence
38. Crystallographic studies of dynamic properties of lysozyme
39. Analysis of domain motions by approximate normal mode calculations
40. Analysis of domain motions in large proteins
41. Processing of X-ray diffraction data collected in oscillation mode
42. AMoRe: An automated molecular replacement program package
43. Crystallography & NMR system: A new software suite for macromolecular structure determination
44. Improved methods for building protein models in electron density maps and the location of errors in these models
45. CCP4 suite: Programs for protein crystallography
46. A case study of a large scientific application in Python
47. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
48. Raster 3D Version 2.0. A program for photorealistic molecular graphics
49. Swiss-Model and the Swiss-PdbViewer: An environment for comparative protein modeling