Identification of the green alga, Chlorella vulgaris (SDC1) using cyanobacteria derived 16S rDNA primers: Targeting the chloroplast

FEMS Microbiology Letters

Volumn 202, Issue 2, 2001, Pages 195-203

  Burja, Adam M ^a   Tamagnini, Paula ^b   Bustard, Mark T ^a   Wright, Phillip C ^a  

^a HERIOT WATT UNIVERSITY   (United Kingdom)

^b UNIVERSITY OF PORTO   (Portugal)

Author keywords

16S rRNA gene fragment sequencing; Bioinformatic; Chlorella vulgaris; Chloroplast; Genomic; Green alga

Indexed keywords

FRESH WATER; OLIGONUCLEOTIDE; PRIMER DNA; RIBOSOME RNA;

ARTICLE; CHLORELLA VULGARIS; CHLOROPLAST; CYANOBACTERIUM; EUKARYOTE; GENE AMPLIFICATION; GENE SEQUENCE; GREEN ALGA; NONHUMAN; PHOTOTROPHIC BACTERIUM; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

CHLORELLA; CHLOROPLASTS; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; DNA PRIMERS; DNA, FUNGAL; FRESH WATER; MOLECULAR SEQUENCE DATA; RNA, RIBOSOMAL, 16S; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, NUCLEIC ACID;

ALGAE; CHLORELLA VULGARIS; CHLOROPHYTA; CYANOBACTERIA; EUKARYOTA;

EID: 0035928803     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1097(01)00306-8     Document Type: Article

References (44)

1. Effect of pH on growth and carbon metabolism of maltose-releasing Chlorella (Chlorophyta)
2. Comparative physiology and biochemistry and taxonomic assignment of the Chlorella (Chlorophyceae) strains of the Culture Collection of the University of Texas at Austin
3. Comparative physiology, biochemistry and the taxonomy of Chlorella (Chlorophyceae)
4. Studies on Microalgae and Photosynthetic Bacteria
5. Biodegradation of isopropanol by a solvent-tolerant strain of Chlorella vulgaris
6. Oxygenic photosynthetic bacteria
7. The evolutionary relationships among known life forms
8. Small ribosomal subunit RNA sequences, evolutionary relationship among different life forms, and mitochondrial origins
9. Complete sequence of Euglena gracilis chloroplast DNA
10. Complete nucleotide sequence of the Porphyra purpurea chloroplast genome
11. The chloroplast genome of a chlorophyll a+c containing alga, Odontella sinensis
12. Nucleotide sequence of the cyanelle genome from Cyanophora paradoxa
13. Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: The existence of genes possibly involved in chloroplast division
14. Chloroplast origins and evolution
15. Microbial evolution, diversity and ecology: A decade of ribosomal RNA analysis of uncultivated microorganisms
16. PCR primers to amplify 16S rRNA genes from cyanobacteria
17. Microbial symbionts of the Australian Great Barrier Reef sponge, Candidaspongia flabellata
18. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli
19. The morphology of Chlamydomonas chlamydogama, sp. nov
20. Effects of lipids on thermophilic anaerobic digestion and reaction of lipid inhibition upon addition of bentonite
21. Hydrogenases in Nostoc sp. strain PCC 73102, a strain lacking a bidirectional enzyme
22. 16S ribosomal DNA amplification for phylogenetic study
23. CLUSTAL W: Ingroving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choices
24. Basic local alignment search tools
25. The RDP-II (Ribosomal Database Project)
26. Isolation and characterisation of the rRNA gene clusters of Halobacterium marismortui
27. Intraspecific variation in small-subunit rRNA sequences in GenBank: Why single sequences many not adequately represent prokaryotic taxa
28. Organization of chloroplast ribosomal RNA genes and in vitro self-splicing activity of the large subunit rRNA intron from the green alga Chlorella vulgaris C-27
29. The origin of plastids and their spread via secondary symbiosis
30. Molecular evolution and taxonomy of the cyanobacteria
31. The endosymbiont hypothesis revisited
32. Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis
33. Microbial symbionts of Great Barrier Reef sponges
34. hup and hox genes in the filamentous non-heterocystous cyanobacterium, Lyngbya majuscula CCAP 1446/4 - Potential for large scale production
35. Reducing the competitors; isolating the losers and slow-growers
36. Molecular characterization of the toxic cyanobacterium Cylindrospermopsis raciborskii and design of a species-specific PCR
37. Cyanobiont diversity within coralloid roots of selected cycad species
38. Identification and phylogenetic analysis of toxigenic cyanobacteria by multiplex randomly amplified polymorphic DNA PCR
39. Phylogenetic relationships between toxic and non-toxic strains of the genus Microcystis based 16S to 23S internal transcribed spacer sequence
40. Genetic diversity and phylogeny of toxic cyanobacteria determined by DNA polymorphisms within the phycocyanin locus
41. Phylogeny of cyanobacterial nifH genes: Evolutionary implications and potential applications to natural assemblages
42. rRNA sequences and evolutionary relationships among toxic and nontoxic cyanobacteria of the genus Microcystis