Detection of the 5′-cap structure of messenger RNAs with the use of the cap-jumping approach

Nucleic Acids Research

Volumn 29, Issue 22, 2001, Pages 4751-4759

  Efimov, V A ^a   Chakhmakhcheva, O G ^a   Archdeacon, J ^b   Fernandez, J M ^b   Fedorkin, O N ^c   Dorokhov, Yu L ^c   Atabekov, J G ^c  

^a SHEMYAKIN OVCHINNIKOV INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b Active Motif   (United States)

^c MOSCOW STATE UNIVERSITY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

CAPPED RNA; COMPLEMENTARY DNA; MESSENGER RNA; OLIGONUCLEOTIDE; RNA DIRECTED DNA POLYMERASE; GLOBIN; VIRUS RNA;

ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; DNA LIBRARY; DNA TEMPLATE; EXTRACTION; GENE ISOLATION; MAMMAL CELL; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SEQUENCE; RNA STRUCTURE; TOBACCO MOSAIC VIRUS; TOBAMOVIRUS; 5' UNTRANSLATED REGION; ANIMAL; CHEMISTRY; GENETICS; METABOLISM; NUCLEOTIDE SEQUENCE; RABBIT;

ANIMALIA; MAMMALIA; NICOTIANA OBTUSIFOLIA; NICOTIANA TABACUM; TOBACCO MOSAIC VIRUS; TOBAMOVIRUS;

5' UNTRANSLATED REGIONS; ANIMALS; BASE SEQUENCE; DNA, COMPLEMENTARY; GLOBINS; OLIGONUCLEOTIDES; RABBITS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA CAPS; RNA, MESSENGER; RNA, VIRAL; RNA-DIRECTED DNA POLYMERASE; TOBAMOVIRUS;

EID: 0035889248     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/29.22.4751     Document Type: Article

References (36)

1. Capping enzyme in eukaryotic mRNA synthesis
2. The ends of the affair: Capping and polyadenylation
3. The scanning model for translation: An update
4. Synthesis of subgenomic RNAs by positive-strand RNA viruses
5. Tobacco mosaic virus RNA carries 5′-terminal triphosphorylated guanosine blocked by 5′-linked 7-methylguanosine
6. The 5′ end group of tobacco mosaic virus RNA is m7G5′ppp5′Gp
7. Internal initiation of translation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA
8. An efficient strategy to isolate full-length cDNAs based on an mRNA cap retention procedure (CAPture)
9. Oligo-capping: A simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides
10. Construction and characterization of a full length-enriched and a 5′-end-enriched cDNA library
11. High efficiency selection of full-length cDNA by improved biotinylated cap trapper
12. Molecular cloning, by a novel approach, of a cDNA encoding a putative olfactory protein in the labial palps of the moth Cactoblastis cactorum
13. Generation and use of high-quality cDNA from small amounts of total RNA by SMART PCR
14. CapSelect: A highly sensitive method for 5′cap-dependent enrichment of full-length cDNA in PCR-mediated analysis of mRNAs
15. Identification of negative-strand complements to cytochrome oxidase subunit III RNA in Trypanosoma brucei
16. Sequencing the termini of capped viral RNA by 5′-3′ ligation and PCR
17. A highly sensitive method for mapping the 5′ termini of mRNAs
18. Method for the specific coupling of the cap of the 5′-end of an mRNA fragment and preparation of mRNA and complete cDNA
19. Complete nucleotide sequence and genome organization of a tobamovirus infecting cruciferae plants
20. Purification of viral RNA by means of bentonite
21. Agroinfection as an alternative to insects for infecting plants with beet western yellows luteovirus
22. GeneBee-NET: Internet-based server for analyzing biopolymers structure
23. Chemical methods of DNA and RNA fluorescent labeling
24. Ultrastructure of a temperature-induced Balbiani ring in Chironomus thummi
25. HSF access to heat shock elements in vivo depends critically on promoter architecture defined by GAGA factor, TFIID, and RNA polymerase II binding sites
26. Heat-shock induction and cytoplasmic localization of transcripts from telomeric-associated sequences in Chironomus thummi
27. Telomeres terminating with long complex tandem repeats
28. Zepp, a LINE-like retrotransposon accumulated in the Chlorella telomeric region
29. Structure of the Chlorella Zepp retrotransposon: Nested Zepp clusters in the genome
30. Cell stress and translational inhibitors transiently increase the abundance of mammalian SINE transcripts
31. Induction of B2 RNA polymerase III transcription by heat shock: Enrichment for heat shock induced sequences in rodent cells by hybridisation subtraction
32. Induction of heat shock protein transcripts and B2 transcripts by various stresses in Chinese hamster cells
33. Silk worm Bm1 SINERNA increases following cellular insults
34. Copia is transcriptionally responsive to environmental stress
35. Dictyostelium transposable element DIRS-1 has 350-base-pair inverted terminal repeats that contain a heat shock promoter
36. Physiological stresses increase mouse short interspersed element (SINE) RNA expression in vivo