Functional interrelationships in the alkaline phosphatase superfamily: Phosphodiesterase activity of Escherichia coli alkaline phosphatase

Biochemistry

Volumn 40, Issue 19, 2001, Pages 5691-5699

  O'Brien, Patrick J ^a   Herschlag, Daniel ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HOMOLOGY;

CATALYSIS; ENZYME INHIBITION; ESCHERICHIA COLI; ESTERS; HYDROLYSIS; PHOSPHATES; POSITIVE IONS; ZINC;

ENZYMES;

ALKALINE PHOSPHATASE; PHOSPHODIESTERASE;

ARTICLE; ENZYME ACTIVE SITE; ESCHERICHIA COLI; EVOLUTION; GENE DUPLICATION; NATURAL SELECTION; NONHUMAN; PHOSPHORYLATION; PRIORITY JOURNAL; SEQUENCE HOMOLOGY;

ALKALINE PHOSPHATASE; AMINO ACID SUBSTITUTION; ANILINE COMPOUNDS; ARGININE; BINDING SITES; ENZYME ACTIVATION; ESCHERICHIA COLI; HEAT; HYDROGEN-ION CONCENTRATION; MUTAGENESIS, SITE-DIRECTED; NITROPHENOLS; ORGANOPHOSPHORUS COMPOUNDS; PHOSPHODIESTERASE INHIBITORS; PHOSPHORIC DIESTER HYDROLASES; PHOSPHORIC MONOESTER HYDROLASES; SERINE; SUBSTRATE SPECIFICITY;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0035873714     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0028892     Document Type: Article

References (77)

1. Strater, N., Lipscomb, W. N., Klabunde, T., and Krebs, B. (1996) Angew. Chem., Int. Ed. 35, 2024-2055.
2. Wilcox, D. E. (1996) Chem. Rev. 96, 2435-2458.
3. Benkovic, S. J., and Schray, K. J. (1978) in Transition States of Biochemical Processes (Gandour, R. D., and Schowen, R. L., Eds.) pp 493-527, Plenum, New York.
4. Cleland, W. W., and Hengge, A. C. (1995) FASEB J. 9, 1585-1594.
5. Herschlag, D., and Jencks, W. P. (1990) Biochemistry 29, 5172-5179.
6. Thatcher, G. R. J., and Kluger, R. (1989) Adv. Phys. Org. Chem. 25, 99-265.
7. Hengge, A. C., Edens, W. A., and Elsing, H. (1994) J. Am. Chem. Soc. 116, 5045-5049.
8. Hengge, A. C., Tobin, A. E., and Cleland, W. W. (1995) J. Am. Chem. Soc. 117, 5919-5926.
9. Bond, C. S., Clements, P. R., Ashby, S. J., Collyer, C. A., Harrop, S. J., Hopwood, J. J., and Guss, J. M. (1997) Structure 5, 277-289.
10. Lukatela, G., Krauss, N., Theis, K., Selmer, T., Gieselmann, V., von Figura, K., and Saenger, W. (1998) Biochemistry 37, 3654-3664.
11. Galperin, M. Y., Bairoch, A., and Koonin, E. V. (1998) Protein Sci. 7, 1829-1835.
12. Clair, T., Lee, H. Y., Liotta, L. A., and Stracke, M. L. (1997) J. Biol. Chem. 272, 996-1001.
13. Oda, Y., Kuo, M.-D., Huang, S. S., and Huang, J. S. (1993) J. Biol. Chem. 268, 27318-27326.
14. Gijsbers, B., Ceulemans, H., Stalmans, W., and Bollen, M. (2001) J. Biol. Chem. 276, 1361-1368.
15. O'Brien, P. J., and Herschlag, D. (1998) J. Am. Chem. Soc. 120, 12369-12370.
16. O'Brien, P. J., and Herschlag, D. (1999) Chem. Biol. 6, R91-R105.
17. Gerlt, J. A., and Babbitt, P. C. (2000) Gen. Biol. 1, 1-10.
18. Herschlag, D., Piccirilli, J. A., and Cech, T. R. (1991) Biochemistry 30, 4844-4854.
19. Hollfelder, F., and Herschlag, D. (1995) Biochemistry 34, 12255-12264.
20. Chaidaroglou, A., Brezinski, D. J., Middleton, S. A., and Kantrowitz, E. R. (1988) Biochemistry 27, 8338-8343.
21. Stec, B., Hehir, M. J., Brennan, C., Nolte, M., and Kantrowitz, E. R. (1998) J. Mol. Biol. 277, 647-662.
22. Xu, X., and Kantrowitz, E. R. (1992) J. Biol. Chem. 267, 16244-16251.
23. Ma, L., and Kantrowitz, E. R. (1994) J. Biol. Chem. 269, 31614-31619.
24. Applebury, M. L., Johnson, B. P., and Coleman, J. E. (1970) J. Biol. Chem. 245, 4968-4976.
25. Kirby, A. J., and Varvoglis, A. G. (1967) J. Am. Chem. Soc. 89, 415-423.
26. Brenna, O., Perrella, M., Pace, M., and Pietta, P. G. (1975) Biochem. J. 151, 291-296.
27. Plocke, D. J., Levinthal, C., and Vallee, B. L. (1962) Biochemistry 1, 373-378.
28. Barshop, B. A., Wrenn, R. F., and Frieden, C. (1983) Anal. Biochem. 130, 134-145.
29. Smile, D. H., Donohue, M., Yeh, M., Kenkel, T., and Trela, J. M. (1976) J. Biol. Chem. 252, 3399-3401.
30. Heppel, L. A., Harkness, D. R., and Hilmoe, R. J. (1962) J. Biol. Chem. 237, 841-846.
31. Rezende, A. A., Pizauro, J. M., Ciancaglini, P., and Leone, F. A. (1994) Biochem. J. 301, 517-522.
32. Yamane, K., and Maruo, B. (1978) J. Bacteriol. 134, 100-107.
33. Zaug, A. J., and Cech, T. R. (1986) Biochemistry 25, 4478-4482.
34. Fujimoto, M., Kuninaka, A., and Yoshino, H. (1974) Agric. Biol. Chem. 38, 785-790.
35. Polya, G. M., Brownlee, A. G., and Hynes, M. J. (1975) J. Bacteriol. 124, 693-703.
36. Richardson, C. C., and Kornberg, A. (1964) J. Biol Chem. 239, 242-250.
37. Snyder, S. L., and Wilson, I. B. (1972) Biochemistry 11, 1616-1623.
38. Lazdunski, C., and Lazdunski, M. (1969) Eur. J. Biochem. 7, 294-300.
39. Coleman, J. E. (1992) Annu. Rev. Biophys. Biomol. Struct. 21, 441-483.
40. Reid, T. W., and Wilson, I. B. (1971) in The Enzymes (Boyer, P. D., Ed.) pp 373-415. Academic Press, New York.
41. Holtz, K. M., and Kantrowitz, E. R. (1999) FEBS Lett. 462, 7-11.
42. Ghosh, S. S., Block, S. C., Rokita, S. E., and Kaiser, E. T. (1986) Science 231, 145-148.
43. Han, R., and Coleman, J. E. (1995) Biochemistry 34, 4238-4245.
44. Radzicka, A., and Wolfenden, R. (1995) Science 267, 90-93.
45. Kim, E. E., and Wyckoff, H. W. (1989) Clin. Chim. Acta 186, 175-188.
46. Butler-Ransohoff, J. E., Kendall, D. A., and Kaiser, E. T. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 4276-4278.
47. O'Brien, P. J., and Herschlag, D. (1999) J. Am. Chem. Soc. 121, 11022-11023.
48. Holtz, K. M., Catrina, I. E., Hengge, A. C., and Kantrowitz, E. R. (2000) Biochemistry 39, 9451-9458.
49. Kim, E. E., and Wyckoff, H. W. (1991) J. Mol. Biol. 218, 449-464.
50. Jensen, R. A. (1976) Annu. Rev. Microbiol. 30, 409-425.
51. Lewis, E. B. (1951) Cold Spring Harbor Symp. Quant. Biol. 16, 159-163.
52. Ohno, S. (1970) Evolution by gene duplication, George Allen and Unwin, London.
53. Hughes, A. L. (1994) Proc. R. Soc. London, Ser. B 256, 119-124.
54. Parsot, C. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 5207-5210.
55. Piatigorsky, J., and Wistow, G. (1991) Science 252, 1078-1079.
56. Babbitt, P., Hasson, M. S., Wedekind, J. E., Palmer, D. R. J., Barrett, W. C., Reed, G. H., Rayment, I., Ringe, D., Kenyon, G. L., and Gerlt, J. A. (1996) Biochemistry 35, 16489-16501.
57. Babbitt, P. C., and Gerlt, J. A. (1997) J. Biol. Chem. 272, 30591-30594.
58. Gerlt, J. A., and Babbitt, P. C. (1998) Curr. Opin. Chem. Biol. 2, 607-612.
59. Steitz, T. A., and Steitz, J. A. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 6498-6502.
60. Cooperman, B. S. (1976) in Metal Ions in Biological Systems (Sigel, H., Ed.) pp 79-125, Marcel Dekker, New York.
61. Curley, J. F., Joyce, C. M., and Piccirilli, J. A. (1997) J. Am. Chem. Soc 119, 12691-12692.
62. Hendry, P., and Sargeson, A. M. (1990) in Progress in Inorganic Chemistry: Bioorganic Chemistry (Lippard, S. J., Ed.) pp 201-258, John Wiley & Sons, New York.
63. Herschlag, D., and Jencks, W. P. (1990) J. Am. Chem. Soc. 112, 1942-1950.
64. Knowles, J. R. (1980) Annu. Rev. Biochem. 49, 877-919.
65. Holtz, K. M., Stec. B., and Kantrowitz, E. R. (1999) J. Biol. Chem. 274, 8351-8354.
66. Murphy, J. E., Stec, B., Ma, L., and Kantrowitz, E. R. (1997) Nat. Struct. Biol. 4, 618-622.
67. Abell, K. W. Y., and Kirby, A. J. (1986) Tetrahedron Lett. 27, 1085-1088.
68. Shim, H., Hong, S., and Raushel, F. M. (1998) J. Biol. Chem. 273, 17445-17450.
69. Park, H. I., and Ming, L.-J. (1999) Angew. Chem., Int. Ed. 38, 2914-2916.
70. Williams, N. H., Cheung, W., and Chin, J. (1998) J. Am. Chem. Soc. 120, 8079-8087.
71. Tsubouchi, A., and Bruice, T. C. (1994) J. Am. Chem. Soc. 116, 11614-11615.
72. Molenveld, P., Kapsabelis, S., Engbersen, J. F. J., and Reinhoudt, D. R. (1997) J. Am. Chem. Soc. 119, 2948-2949.
73. Serpersu, E. H., Shortle, D., and Mildvan, A. S. (1986) Biochemistry 25 (1), 68-77.
74. Schultes, E. A., and Bartel, D. P. (2000) Science 289, 448-452.
75. Kirby, A. J., and Jencks, W. P. (1965) J. Am. Chem. Soc. 87, 3209-3216.
76. Chin, J., Banaszczyk, M., Jubian, V., and Zou, X. (1989) J. Am. Chem. Soc. 111, 186-190.
77. Simopoulos, T. T., and Jencks, W. P. (1994) Biochemistry 33, 10375-10380.