Solution structure and dynamics of GCN4 cognate DNA: NMR investigations

Nucleic Acids Research

Volumn 29, Issue 2, 2001, Pages 499-505

  Khandelwal, Purnima ^a,b   Panchal, S C ^a   Radha, P K ^a,c   Hosur, R V ^a  

^a TATA INSTITUTE OF FUNDAMENTAL RESEARCH   (India)

^b UNIVERSITY OF MICHIGAN   (United States)

^c SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; CARBON 13; COMPLEMENTARY DNA; CYCLIC AMP RESPONSIVE ELEMENT BINDING PROTEIN; CYTOSINE; DINUCLEOTIDE; DNA; DNA BINDING PROTEIN; DOUBLE STRANDED DNA; GUANINE; LEUCINE ZIPPER PROTEIN; THYMINE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR GCN4; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; AQUEOUS SOLUTION; ARTICLE; CALCULATION; CONTROLLED STUDY; DNA BINDING; DNA DETERMINATION; DNA PROTEIN COMPLEX; DNA STRUCTURE; DNA SYNTHESIS; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS; X RAY SPECTROMETRY;

EID: 0035863879     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/29.2.499     Document Type: Article

References (41)

1. Structural studies of protein-nucleic acid interaction: The sources of sequence-specific binding
2. DNA targets for certain bZIP proteins distinguished by an intrinsic bend
3. 13C1′ relaxation rate measurements of an internal dynamics sequence effect in the lac operator
4. 13C NMR spectroscopy
5. Evidence for translational regulation of the activator of general amino acid control in yeast
6. 5′ Untranslated sequences are required for the translational control of a yeast regulatory gene
7. Folding transition in the DNA-binding domain of GCN4 on specific binding to DNA
8. Identification of three residues in the basic regions of the bZIP proteins GCN4, C/EBP and TAF-1 that are involved in specific DNA binding
9. Crystal structure of a bZIP/GDNA complex at 2.2 A: Determinants of DNA specific recognition
10. The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted α helices: Crystal structure of the protein-DNA complex
11. The fine structure of two DNA dodecamers containing the cAMP responsive element sequence and its inverse: Nuclear magnetic resonance and molecular simulation studies
12. Advances in the synthesis of oligonucleotides by the phosphoramidite approach
13. Polymer support oligonucleotide synthesis XVIII: Use of β-cyanoethyl-N,N-dialkylamino-N-morpholino phosphoramidite of deoxynucleosides for the synthesis of DNA fragments simplifying deprotection and isolation of the final product
14. Investigation of exchange processes by two-dimensional NMR spectroscopy
15. Coherence transfer by isotropic mixing: Application to proton correlation spectroscopy
16. Two-dimensional correlation of connected NMR transitions
17. Multiple quantum filters for elucidating NMR coupling networks
18. Pure absorption gradient enhanced heteronuclear single quantum correlation spectroscopy with improved sensitivity
19. 31P-driven NMR procedures for complete assignment of backbone resonances in oligodeoxyribonucleotides
20. Iterative schemes for bilinear operators; application to spin decoupling
21. 15N inverse detected heteronuclear NMR spectroscopy: Application to Staphylococcal nuclease
22. 15N spin relaxation measurements
23. 15N NMR relaxation
24. Sensitivity improvement in proton-detected two-dimensional heteronuclear relay spectroscopy
25. Sensitivity improvement in proton-detected two-dimensional heteronuclear correlation NMR spectroscopy
26. Rapid recording of 2D NMR spectra without phase cycling. Application to the study of hydrogen exchange in proteins
27. Investigation of protein motions via relaxation measurements
28. 2
29. Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity
30. Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 2. Analysis of experimental results
31. Deviations from the simple two-parameter model-free approach to the interpretation of nitrogen-15 nuclear magnetic relaxation of proteins
32. Backbone dynamics of Escherichia coli ribonuclease HI: Correlations with structure and function in an active enzyme
33. Application of two-dimensional NMR spectroscopy in the determination of solution conformation of nucleic-acids
34. 1H resonances in RNA
35. RNA structure and NMR spectroscopy
36. The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids
37. A test of the model-free formulas: Effects of anisotropic rotational diffusion and dimerization