-
3
-
-
0029623184
-
Computational methods to predict binding free energy in ligand-receptor complexes
-
(1995)
J. Med. Chem.
, vol.38
, pp. 4953-4967
-
-
Ajay1
Murcko, M.A.2
-
5
-
-
0000008625
-
Free energy calculations: Methods and applications
-
Schleyer, P. V. R., Allinger, N. L., Clark, T., Gasteiger, J., Kollman, P. A., Schaefer, H. F., III, Schreiner, R. P., Eds.; John Wiley & Sons: New York
-
(1998)
Encyclopedia of Computational Chemistry
, pp. 1036-1061
-
-
Pearlman, D.A.1
Rao, B.G.2
-
11
-
-
0026696688
-
Binding of an antiviral agent to a sensitive and a resistant human rhinovirus. Computer simulation studies with sampling of amino acid side-chain conformations. I. Mapping the rotomers of residue 188 of viral protein 1
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 679-696
-
-
Wade, R.C.1
McCammon, J.A.2
-
12
-
-
12644277392
-
The structural basis for the specificity of pyridinylimidazole inhibitors of p38 MAP kinase
-
(1997)
Chem. Biol.
, vol.4
, pp. 423-431
-
-
Wilson, K.P.1
McCaffrey, P.G.2
Hsiao, K.3
Pazhanisamy, S.4
Galullo, V.5
Bemis, G.W.6
Fitzgibbon, M.J.7
Caron, P.R.8
Murcko, M.A.9
Su, M.S.10
-
13
-
-
0032153192
-
Empirical scoring functions. II. The testing of an empirical scoring function for the prediction of ligand-receptor binding affinities and the use of Bayesian regression to improve the quality of the model
-
(1998)
J. Comput.-Mol. Des.
, vol.12
, pp. 503-519
-
-
Murray, C.W.1
Auton, T.R.2
Eldridge, M.D.3
-
19
-
-
0003700434
-
-
University of California, San Francisco
-
(1997)
AMBER 5.0
-
-
Case, D.A.1
Pearlman, D.A.2
Caldwell, J.C.3
Cheatham III, T.E.4
Ross, W.S.5
Simmerling, C.6
Darden, T.7
Merz, K.M.8
Stanton, R.V.9
Cheng, A.10
Vincent, J.J.11
Crowley, M.12
Ferguson, D.M.13
Radmer, R.14
Seibel, G.L.15
Singh, U.C.16
Weiner, P.17
Kollman, P.A.18
-
23
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
24
-
-
0004133516
-
-
Gaussian Inc.: Pittsburgh, PA
-
(1998)
Gaussian 98 (Revision A.3)
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Zakrzewski, V.G.7
Montgomery, J.A.8
Stratmann, R.E.9
Burant, J.C.10
Dapprich, S.11
Millam, J.M.12
Daniels, A.D.13
Kudin, K.N.14
Strain, M.C.15
Farkas, O.16
Tomasi, J.17
Barone, V.18
Cossi, M.19
Cammi, R.20
Mennucci, B.21
Pomelli, C.22
Adamo, C.23
Clifford, S.24
Ochterski, J.25
Petersson, G.A.26
Ayala, P.Y.27
Cui, Q.28
Morokuma, K.29
Malick, D.K.30
Rabuck, A.D.31
Raghavachari, K.32
Foresman, J.B.33
Cioslowski, J.34
Ortiz, J.V.35
Stefanov, B.B.36
Liu, G.37
Liashenko, A.38
Piskorz, P.39
Komaromi, I.40
Gomperts, R.41
Martin, R.L.42
Fox, D.J.43
Keith, T.44
Al-Laham, M.A.45
Peng, C.Y.46
Nanayakkara, A.47
Gonzalez, C.48
Challacombe, M.49
Gill, P.M.W.50
Johnson, B.G.51
Chen, W.52
Wong, M.W.53
Andres, J.L.54
Head-Gordon, M.55
Replogle, E.S.56
Pople, J.A.57
more..
-
25
-
-
0003100140
-
-
Molecular Simulations Inc., Charmin Parm22, Burlington, MA
-
-
-
-
27
-
-
0032698313
-
Free energy grids: A practical qualitative application of free energy perturbation to ligand design using the OWFEG method
-
(1999)
J. Med. Chem.
, vol.42
, pp. 4313-4324
-
-
Pearlman, D.A.1
|