Crystal structure of activated CheY: Comparison with other activated receiver domains

Journal of Biological Chemistry

Volumn 276, Issue 19, 2001, Pages 16425-16431

  Lee, Seok Yong ^a,b   Cho, Ho S ^a,c   Pelton, Jeffrey G ^a   Yan, Dalai ^c   Berry, Edward A ^a   Wemmer, David E ^a,b  

^a LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BERYLLIUM COMPOUNDS; CHEMICAL BONDS; CRYSTAL STRUCTURE; HYDROGEN BONDS; HYDROPHOBICITY; MANGANESE;

ELECTROSTATIC POTENTIAL;

BIOCHEMISTRY;

ASPARAGINE; ASPARTIC ACID; BERYLLIUM; BERYLLOFLUORIDE; CARBONYL DERIVATIVE; GLUTAMIC ACID; LYSINE; MANGANESE; PHOSPHATE; PROTEIN; PROTEIN CHEY; PROTEIN FLIM; REGULATOR PROTEIN; THREONINE; TYROSINE; UNCLASSIFIED DRUG; WATER; BACTERIAL PROTEIN; MAGNESIUM; MEMBRANE PROTEIN; METHYL ACCEPTING CHEMOTAXIS PROTEINS; METHYL-ACCEPTING CHEMOTAXIS PROTEINS; RECOMBINANT PROTEIN;

ARTICLE; BETA SHEET; BINDING SITE; CRYSTAL STRUCTURE; ELECTRICITY; ENZYME ACTIVE SITE; GEOMETRY; HYDROGEN BOND; HYDROPHOBICITY; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DOMAIN; CHEMICAL STRUCTURE; CHEMISTRY; CHEMOTAXIS; COMPARATIVE STUDY; ESCHERICHIA COLI; GENETICS; METABOLISM; METHODOLOGY; PROTEIN SECONDARY STRUCTURE; X RAY CRYSTALLOGRAPHY;

BACTERIAL PROTEINS; BINDING SITES; CHEMOTAXIS; CRYSTALLOGRAPHY, X-RAY; ESCHERICHIA COLI; MAGNESIUM; MANGANESE; MEMBRANE PROTEINS; MODELS, MOLECULAR; PROTEIN STRUCTURE, SECONDARY; RECOMBINANT PROTEINS;

EID: 0035844214     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M101002200     Document Type: Article

References (47)

1. Nixon, B. T., Ronson, C. W., and Ausubel, F. M. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 7850-7854
2. Ota, I. M., and Varshavsky, A. (1993) Science 262, 566-569
3. Parkinson, J. S., and Kofoid, E. C. (1992) Annu. Rev. Genet. 26, 71-112
4. Stock, A. M., Robinson, V. L., and Goudreau, P. N. (2000) Annu. Rev. Biochem. 69, 183-215
5. Grebe, T. W., and Stock, J. B. (1999) Adv. Microb. Physiol. 41, 139-227
6. Djordjevic, S., and Stock, A. M. (1998) J. Struct. Biol. 124, 189-200
7. Stock, J. B., Stock, A. M., and Mottonen, J. M. (1990) Nature 344, 395-400
8. Volz, K. (1993) Biochemistry 32, 11741-11753
9. Sanders, D., Gillece-Castro, B. L., Stock, A. M., Burlingame, A. L., and Koshland, D. E., Jr. (1989) J. Biol. Chem. 264, 21770-21778
10. Lukat, G. S., Lee, B. H., Mottonen, J. M., Stock, A. M., and Stock, J. B. (1991) J. Biol. Chem. 266, 8348-8354
11. Lukat, G. S., Stock, A. M., and Stock, J. B. (1990) Biochemistry 29, 5436-5442
12. Needham, J. V., Chen, T. Y., and Falke, J. J. (1993) Biochemistry 32, 3363-3367
13. Appleby, J. L., and Bourret, R. B. (1998) J. Bacteriol. 180, 3563-3569
14. Volz, K., and Matsumura, P. (1991) J. Biol. Chem. 266, 15511-15519
15. Zhu, X., Rebello, J., Matsumura, P., and Volz, K. (1997) J. Biol. Chem. 272, 5000-5006
16. Zhu, X. Y., Amsler, C. D., Volz, K., and Matsumura, P. (1996) J. Bacteriol. 178, 4208-4215
17. Feher, V. A., and Cavanagh, J. (1999) Nature 400, 289-293
18. Weinstein, M., Lois, A. F., Monson, E. K., Ditta, G. S., and Helinski, D. R. (1992) Mol. Microbiol. 6, 2041-2049
19. Yan, D., Cho, H. S., Hastings, C. A., Igo, M. M., Lee, S.-Y., Pelton, J. G., Stewart, V., Wemmer, D. E., and Kustu, S. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 14789-14794
20. Cho, H. S., Lee, S.-Y., Yan, D., Pan, X., Parkinson, J. S., Kustu, S., Wemmer, D. E., and Pelton, J. G. (2000) J. Mol. Biol. 297, 543-551
21. Lewis, R. J., Brannigan, J. A., Muchova, K., Barak, I., and Wilkinson, A. J. (1999) J. Mol. Biol. 294, 9-15
22. Birck, C., Mourey, L., Gouet, P., Fabry, B., Schumacher, J., Rousseau, P., Kahn, D., and Samama, J.-P. (1999) Structure (Lond.) 7, 1505-1515
23. Welch, M., Oosawa, K., Aizawa, S.-I., and Eisenbach, M. (1994) Biochemistry 33, 10470-10476
24. Lee, S.-Y., Cho, H. S., Pelton, J. G., Yan, D., Henderson, R. K., King, D. S., Huang, L., Kustu, S., Berry, E. A., and Wemmer, D. E. (2001) Nature Struct. Biol. 8, 52-56
25. Bruix, M., Pascual, J., Santoro, J., Prieto, J., Serrano, L., and Rico, M. (1993) Eur. J. Biochem. 215, 573-585
26. Otwinowski, Z. O., and Minor, W. (1997) Methods Enzymol. 276, 307-326
27. Navaza, J. (1994) Acta Crystallogr. Sect. A Cryst. Struct. Commun. 50, 157-163
28. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
29. Bailey, S. (1994) Acta Crystallogr. Sect. D Biol. Crystallogr. 50, 760-763
30. Kleywegt, G. J., and Jones, T. A. (1999) Acta Crystallogr. D Biol. Crystallogr. 55, 941-944
31. Jones, T. A., Zou, J.-Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. Sect. A 47, 110-119
32. Brünger, A. T. (1992) Nature 355, 472-475
33. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
34. Hooft, R. W. W., Vriend, G., Sander, C., and Abola, E. E. (1996) Nature 381, 272
35. Kar, L., Matsumura, P., and Johnson, M. E. (1992) Biochem. J. 287, 521-531
36. Stock, A. M., Martinex-Hackert, E., Rasmussen, B. F., West, A. H., Stock, J. B., Ringe, D., and Petsko, G. A. (1993) Biochemistry 32, 13375-13380
37. Moy, F. J., Lowry, D. F., Matsumura, P., Dahlquist, F. W., Krywko, J. E., and Domaille, P. J. (1994) Biochemistry 33, 10731-10742
38. Halkides, C. J., McEvoy, M. M., Casper, E., Matsumura, P., Volz, K., and Dahlquist, F. W. (2000) Biochemistry 39, 5280-5286
39. McEvoy, M. M., Bren, A., Eisenbach, M., and Dahlquist, F. W. (1999) J. Mol. Biol. 289, 1423-1433
40. Bellsolell, L., Cronet, P., Majolero, M., Serrano, L., and Coll, M. (1996) J. Mol. Biol. 257, 116-128
41. Sola, M., Lopez-Hernandez, E., Cronet, P., Lacroix, E., Serrano, L., Coll, M., and Parraga, A. (2000) J. Mol. Biol. 303, 213-225
42. Gouet, P., Fabry, B., Guillet, V., Birck, C., Mourey, L., Kahn, D., and Samama, J.-P. (1999) Structure (Lond.) 7, 1517-1526
43. Kern, D., Volkman, B. F., Luginbühl, P., Nohaile, M. J., Kustu, S., and Wemmer, D. E. (1999) Nature 402, 894-898
44. Lewis, R. J., Muchova, K., Brannigan, J. A., Barak, I., Leonard, G., and Wilkinson, A. J. (2000) J. Mol. Biol. 297, 757-770
45. Volkman, B. F., Nohaile, M. J., Amy, N. K., Kustu, S., and Wemmer, D. E. (1995) Biochemistry 34, 1413-1424
46. Nohaile, M. J., Kern, D., Wemmer, D. E., Stedman, K., and Kustu, S. (1997) J. Mol. Biol. 273, 299-316
47. Volkman, B. F., Wemmer, D. E., and Kern, D. (2001) Science 291, 2429-2433