Universal translation initiation factor IF2/eIF5B

Cold Spring Harbor Symposia on Quantitative Biology

Volumn 66, Issue , 2001, Pages 417-424

  Dever, T E ^a   Roll Mecak, A ^a   Choi, S K ^a   Lee, J H ^a   Cao, C ^a   Shin, B S ^a   Burley, S K ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

GUANOSINE TRIPHOSPHATE; INITIATION FACTOR; INITIATION FACTOR 2; INITIATION FACTOR 5A; INITIATION FACTOR 5B; UNCLASSIFIED DRUG; GUANOSINE TRIPHOSPHATASE; TRANSLATION INITIATION FACTOR IF2;

AMINO ACID SEQUENCE; BINDING KINETICS; CONFERENCE PAPER; EUKARYOTE; GENETIC CONSERVATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN SYNTHESIS; RIBOSOME; START CODON; STRUCTURE ANALYSIS; TRANSCRIPTION INITIATION SITE; TRANSLATION INITIATION; ARTICLE; PROKARYOTE; PROTEIN STRUCTURE;

EUKARYOTA;

EID: 0035788028     PISSN: 00917451     EISSN: None     Source Type: Book Series    
DOI: 10.1101/sqb.2001.66.417     Document Type: Conference Paper

References (37)

1. Agrawal R., Penczek P., Grassucci R., and Frank J. 1998. Visualization of elongation factor G on the Escherichia coli 70S ribosome: The mechanism of translocation. Proc. Natl. Acad. Sci. 95: 6134.
2. Battiste J.B., Pestova T.V., Hellen C.U.T., and Wagner G. 2000. The eIF1A solution structure reveals a large RNA-binding surface important for scanning function. Mol. Cell 5: 109.
3. Biou V., Shu F., and Ramakrishnan V. 1995. X-ray crystallography shows that translational initiation factor IF3 consists of two compact α/β domains linked by an α-helix. EMBO J. 4056.
4. Boileau G., Butler P., Hershey J.W., and Traut R.R. 1983. Direct cross-links between initiation factors 1, 2, and 3 and ribosomal proteins promoted by 2-iminothiolane. Biochemistry 22: 3162.
5. Carrera P., Johnstone O., Nakamura A., Casanova J., Jackle H., and Lasko P. 2000. VASA mediates translation through interaction with a Drosophila yIF2 homolog. Mol. Cell 5: 181.
6. Carter A., Clemons W., Brodersen D., Morgan-Warren R., Hartsch T., Wimberly B., and Ramakrishnan V. 2001. Crystal structure of an initiation factor bound to the 30S ribosomal subunit. Science 291: 498.
7. Met binding to ribosomes by yIF2, a bacterial IF2 homolog in yeast. Science 280: 1757.
8. Choi S.K., Olsen D., Roll-Mecak A., Martung A., Remo K., Burley S., Hinnebusch A., and Dever T. 2000. Physical and functional interaction between eukaryotic orthologs of prokaryotic translation initiation factors IF1 and IF2. Mol. Cell. Biol. 20: 7183.
9. Dever T.E. 1999. Translation initiation: Adept at adapting. Trends Biochem. Sci. 24: 398.
10. Donahue T. 2000. Genetic approaches to translation initiation in Saccharomyces cerevisiae. In Translational control of gene expression (ed. N. Sonenberg et al.), p. 487. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
11. Fletcher C.M., Pestova T.V., Hellen C.U.T., and Wagner G. 1999. Structure and interactions of the translation initiation factor eIF1. EMBO J. 18: 2631.
12. Godefroy-Colburn T., Wolfe A.D., Dondon J., Grunberg-Manago M., Dessen P., and Pantaloni D. 1975. Light-scattering studies showing the effect of initiation factors on the reversible dissociation of Escherichia coli ribosomes. J. Mol. Biol. 94-461.
13. Met binding site of initiation factor IF2. EMBO J. 19: 5233.
14. Hershey J.W.B. and Merrick W.C. 2000. Pathway and mechanism of initiation of protein synthesis. In Translational control of gene expression (ed. N. Sonenberg et al.), p. 33. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
15. Huang H., Yoon H., Hannig E.M., and Donahue T.F. 1997. GTP hydrolysis controls stringent selection of the AUG start codon during translation initiation in Saccharomyces cerevisiae. Genes Dev. 11: 2396.
16. Kang H.A. and Hershey J.W. 1994. Effect of initiation factor eIF-5A depletion on protein synthesis and proliferation of Saccharomyces cerevisiae. J. Biol. Chem. 269: 3934.
17. Kolakofsky D., Dewey K.F., Hershey J.W., and Thach R.E. 1968. Guanosine 5'-triphosphatase activity of initiation factor f2. Proc. Natl. Acad. Sci. 61: 1066.
18. Kyrpides N.C. and Woese C.R. 1998. Universally conserved translation initiation factors. Proc. Natl. Acad. Sci. 95: 224.
19. Laalami S., Putzer H., Plumbridge J.A., and Grunberg-Manago M. 1991. A severely truncated form of translation initiation factor 2 supports growth of Escherichia coli. J. Mol. Biol. 220: 335.
20. Lee J.H., Choi S.K., Roll-Mecak A., Burley S.K., and Dever T.E. 1999. Universal conservation in translation initiation revealed by human and archaeal homologs of bacterial translation initiation factor IF2. Proc. Natl. Acad. Sci. 96: 4342.
21. Lorsch J.R. and Herschlag D. 1999. Kinetic dissection of fundamental processes of eukaryotic translation initiation in vitro. EMBO J. 18: 6705.
22. Luchin S., Putzer H., Hershey J.W., Cenatiempo Y., Grunberg-Manago M., and Laalami S. 1999. In vitro study of two dominant inhibitory GTPase mutants of Escherichia coli translation initiation factor IF2. Direct evidence that GTP hydrolysis is necessary for factor recycling. J. Biol. Chem. 274: 6074.
23. fMet-binding domain of B. stearothermophilus initiation factor IF2. EMBO J 19: 1918.
24. Misselwitz R., Welfle K., Krafft C., Welfle H., Brandi L., Caserta E., and Gualerzi C. 1999. The fMet-tRNA binding domain of translational initiation factor IF2: Role and environment of its two Cys residues. FEBS Lett. 459: 332.
25. Moazed D., Samaha R.R., Gualerzi C., and Noller H.F. 1995. Specific protection of 16 S rRNA by translational initiation factors. J. Mol. Biol. 248: 207.
26. Moreno J.M., Drskjotersen L., Kristensen J.E., Mortensen K.K., and Sperling-Petersen H.U. 1999. Characterization of the domains of E. coli initiation factor IF2 responsible for recognition of the ribosome. FEBS Lett 455: 130.
27. Phe, EF-Tu, and a GTP analog. Science 270: 1464.
28. Nyborg J., Nissen P., Kjeldgaard M., Thirup S., Polekhina G., and Clark B.F.C. 1996. Structure of the ternary complex of EF-Tu: Macromolecular mimicry in translation. Trends Biochem. Sci. 21: 81.
29. Pestova T.V., Lomakin I.B., Lee J.H., Choi S.K., Dever T.E., and Hellen C.U.T. 2000. The joining of ribosomal subunits in eukaryotes requires eIF5B. Nature 403: 332.
30. Rodnina M., Stark H., Savelsbergh A., Wieden H.-J., Mohr D., Matassova N., Peske F., Daviter T., Gualerzi C., and Wintermeyer W. 2000. GTPase mechanisms and functions of translation factors on the ribosome. Biol. Chem. 381: 377.
31. Roll-Mecak A., Cao C., Dever T.E., and Burley S.K. 2000. X-ray structures of the universal translation initiation factor IF2/eIF5B: Conformational changes on GDP and GTP binding. Cell 103: 781.
32. Sette M., van Tilborg P., Spurio R., Kaptein R., Paci M., Gualerzi C.O., and Boelens R. 1997. The structure of the translational initiation factor IFI from E. coli contains an oligomer-binding motif. EMBO J. 16: 1436.
33. Stark H., Rodnina M., Wieden H.-J., van Heel M., and Wintermeyer W. 2000. Large-scale movement of elongation factor G and extensive conformational change of the ribosome during translocation. Cell 100: 301.
34. fMet and fMet-AMP with the C-terminal domain of Thermus thermophilus translation initiation factor 2. Eur. J. Biochem. 267: 4290.
35. Tolstrup N., Sensen C., Garrett R., and Clausen 1. 2000. Two different and highly organized mechanisms of translation initiation in the archaeon Sulfolobus solfataricus. Extremophiles 4: 175.
36. Tomsic J., Vitali L., Daviter T., Savelsbergh A., Spurio R., Striebeck P., Wintermeyer W., Rodnina M., and Gualerzi C. 2000. Late events of translation initiation in bacteria: A kinetic analysis. EMBO J. 19: 2127.
37. Wu X.-Q. and RajBhandary U. 1997. Effect of the amino acid attached to Escherichia coli initiator tRNA on its affinity for the initiation factor IF2 and on the IF2 dependence of its binding to the ribosome. J. Biol. Chem. 272: 1891.