An ab Initio algorithm for low-resolution 3-D reconstructions from cryoelectron microscopy images

Journal of Structural Biology

Volumn 133, Issue 2-3, 2001, Pages 132-142

  Yin, Zhye ^a   Zheng, Yili ^a   Doerschuk, Peter C ^a  

^a PURDUE UNIVERSITY   (United States)

Author keywords

Cryoelectron microscopy reconstruction; Expectation maximization; Virus structure

Indexed keywords

AB INITIO CALCULATION; CONFERENCE PAPER; CRYOELECTRON MICROSCOPY; ERROR; MOSAIC VIRUS; PARTICLE SIZE; PRIORITY JOURNAL; STATISTICAL ANALYSIS; THREE DIMENSIONAL IMAGING; VIRUS PARTICLE;

COWPEA MOSAIC VIRUS;

EID: 0035783274     PISSN: 10478477     EISSN: None     Source Type: Journal    
DOI: 10.1006/jsbi.2001.4356     Document Type: Conference Paper

References (18)

1. Doerschuk, P. C., and Johnson, J. E. (2000) Ab initio reconstruction and experimental design for cryo electron microscopy. IEEE Trans. Info. Theory 46(5), 1714-1729.
2. Doerschuk, P. C., and Johnson, J. E. (2000) 3D image reconstruction algorithms for cryoelectron microscopy images of virus particles, in Fiddy, M. A., and Millane, R. P. (Eds.), Image Reconstruction from Incomplete Data, SPIE The International Symposium on Optical Science, and Technology, San Diego, CA, July 30-August 4 2000. Vol. 4123, pp. 231-242. SPIE, Bellingham, WA.
3. Doerschuk, P. C. (2000) Orientation using statistical models of virus structure and image formation, in Workshop on Single Particle Reconstruction, National Center for Macromolecular Imaging, Baylor College of Medicine, Houston, TX, April 28-30 2000. See Workshops and Symposia at URL http:// ncmi.bcm.tmc.edu.
4. Vogel, R. H., Provencher, S. W., von Bonsdorff, C.-H., Adrian, M., and Dubochet, J. (1986) Envelope structure of Semliki Forest virus reconstructed from cryo-electron micrographs. Nature 320, 533-535.
5. Provencher, S. W., and Vogel, R. H. (1988) Three-dimensional reconstructions from electron micrographs of disordered specimens. I. Method. Ultramicroscopy 25, 209-222.
6. Vogel, R. H., and Provencher, S. W. (1988) Three-dimensional reconstructions from electron micrographs of disordered specimens. II. Implementation and results. Ultramicroscopy 25, 223-240.
7. Kam, Z., and Gafni, I. (1985) Three-dimensional reconstruction of the shape of human wart virus using spatial correlations. Ultramicroscopy 17, 251-262.
8. Lehmann, E. L., and Casella, G. (1988) Theory of Point Estimation, 2nd Ed., Springer-Verlag, New York.
9. Zheng, Y. (in preparation) Parallel Implementations of 3-D Reconstruction Algorithms for Cryo Electron Microscopy: A Comparative Study. Master's thesis, School of Electrical and Computer Engineering, Purdue University.
10. Zheng, Y., and Doerschuk, P. C. (2000) Explicit computation of orthonormal symmetrized harmonics with application to the identity representation of the icosahedral group. SIAM J. Math. Anal. 32(3), 538-554.
11. Yin, Z. (in preparation) 3-D Reconstruction from Projections of Unknown Orientation and Cryo Electron Microscopy Applications. Ph.D. thesis, School of Electrical and Computer Engineering, Purdue University.
12. Altmann, S. L. (1957) On the symmetries of spherical harmonics. Proc. Camb. Phil. Soc. 53, 343-367.
13. Laporte, O. (1948) Polyhedral harmonics. Z. Naturforsch. 3a, 447-456.
14. Baker, T. S., Olson, N. H., and Fuller, S. D. (1999) Adding the third dimension to virus life cycles: Three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs. Microbiol. Mol. Biol. Rev. 63(4), 862-922.
15. Chen, Z., Stauffacher, C. V., and Johnson, J. E. (1990) Capsid structure and RNA packaging in comoviruses. Semin. Virol. 1, 453-466.
16. http://mmtsb.scripps.edu/viper/viper.html.
17. Thuman-Commike, P. A., Tsuruta, H., Greene, B., Prevelige, P. E., Jr., King, J., and Chiu, W. (1999) Solution X-ray scattering-based estimation of electron cryomicroscopy imaging parameters for reconstruction of virus particles. Biophys. J. 76, 2249-2261.
18. Zhou, Z. H., Hardt, S., Wang, B., Sherman, M. B., Jakana, J., and Chiu, W. (1996) CTF determination of images of ice-embedded single particles using a graphics interface. J. Struct. Biol. 116, 216-222.