-
1
-
-
0034723149
-
Canonical structures for the hypervariable regions of T cell alphabeta receptors
-
doi:10.1006/jmbi. 1999.3358
-
Al-Lazikani, B., Lesk, A. M., and Chothia, C. (2000) Canonical structures for the hypervariable regions of T cell alphabeta receptors, J. Mol. Biol. 295, 979-995, doi:10.1006/jmbi. 1999.3358.
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 979-995
-
-
Al-Lazikani, B.1
Lesk, A.M.2
Chothia, C.3
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990) Basic local alignment search tool, J. Mol. Biol. 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs, Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
Bairoch, A., and Apweiler, R. (2000) The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000, Nucleic Acids Res. 28, 45-48.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
5
-
-
0033757806
-
The Protein Data Bank and the challenge of structural genomics
-
Berman, H. M., Bhat, T. N., Bourne, P. E., Feng, Z., Gilliland, G., Weissig, H., and Westbrook, J. (2000) The Protein Data Bank and the challenge of structural genomics, Nat. Struct. Biol. 7(Suppl.), 957-959.
-
(2000)
Nat. Struct. Biol.
, vol.7
, Issue.SUPPL.
, pp. 957-959
-
-
Berman, H.M.1
Bhat, T.N.2
Bourne, P.E.3
Feng, Z.4
Gilliland, G.5
Weissig, H.6
Westbrook, J.7
-
6
-
-
0029858390
-
The three-dimensional structure of bovine odorant binding protein and its mechanism of odor recognition
-
Bianchet, M. A., Bains, G., Pelosi, P., Pevsner, J., Snyder, S. H., Monaco, H. L., and Amzel, L. M. (1996) The three-dimensional structure of bovine odorant binding protein and its mechanism of odor recognition, Nat. Struct. Biol. 3, 934-939.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 934-939
-
-
Bianchet, M.A.1
Bains, G.2
Pelosi, P.3
Pevsner, J.4
Snyder, S.H.5
Monaco, H.L.6
Amzel, L.M.7
-
7
-
-
0026475945
-
Pheromone binding to two rodent urinary proteins revealed by X-ray crystallography
-
Bocskei, Z., Groom, C. R., Flower, D. R., Wright, C. E., Phillips, S. E., Cavaggioni, A., Findlay, J. B., and North, A. C. (1992) Pheromone binding to two rodent urinary proteins revealed by X-ray crystallography, and Nature 360, 186-188.
-
(1992)
Nature
, vol.360
, pp. 186-188
-
-
Bocskei, Z.1
Groom, C.R.2
Flower, D.R.3
Wright, C.E.4
Phillips, S.E.5
Cavaggioni, A.6
Findlay, J.B.7
North, A.C.8
-
8
-
-
0033977581
-
The ASTRAL compendium for protein structure and sequence analysis
-
Brenner, S. E., Koehl, P., and Levitt, M. (2000) The ASTRAL compendium for protein structure and sequence analysis, Nucleic Acids Res. 28, 254-256.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 254-256
-
-
Brenner, S.E.1
Koehl, P.2
Levitt, M.3
-
9
-
-
0033970022
-
Expectations from structural genomics
-
Brenner, S. E., and Levitt, M. (2000) Expectations from structural genomics, Protein Sci. 9, 197-200.
-
(2000)
Protein Sci.
, vol.9
, pp. 197-200
-
-
Brenner, S.E.1
Levitt, M.2
-
10
-
-
0023173201
-
Prediction of the folding of short polypeptide segments by uniform conformational sampling
-
Bruccoleri, R., and Karplus, M. (1987) Prediction of the folding of short polypeptide segments by uniform conformational sampling, Biopolymers 26, 137-168.
-
(1987)
Biopolymers
, vol.26
, pp. 137-168
-
-
Bruccoleri, R.1
Karplus, M.2
-
11
-
-
0022706389
-
The relation between the divergence of sequence and structure in proteins
-
Chothia, C., and Lesk, A. M. (1986) The relation between the divergence of sequence and structure in proteins, EMBO J. 5, 823-826.
-
(1986)
EMBO J.
, vol.5
, pp. 823-826
-
-
Chothia, C.1
Lesk, A.M.2
-
12
-
-
0023278330
-
Canonical structures for the hypervariable regions of immunoglobulins
-
Chothia, C., and Lesk, A. M. (1987) Canonical structures for the hypervariable regions of immunoglobulins, J. Mol. Biol. 196, 901-917.
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 901-917
-
-
Chothia, C.1
Lesk, A.M.2
-
13
-
-
0033785799
-
Structural proteomics of an archaeon
-
Christendat, D., Yee, A., Dharamsi, A., Kluger, Y., Savchenko, A., Cort, J. R., Booth, V., Mackereth, C. D., Saridakis, V., Ekiel, I., Kozlov, G., Maxwell, K. L., Wu, N., McIntosh, L. P., Gehring, K., Kennedy, M. A., Davidson, A. R., Pai, E. F., Gerstein, M., Edwards, A. M., and Arrowsmith, C. H. (2000) Structural proteomics of an archaeon, Nat. Struct. Biol. 7, 903-909.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 903-909
-
-
Christendat, D.1
Yee, A.2
Dharamsi, A.3
Kluger, Y.4
Savchenko, A.5
Cort, J.R.6
Booth, V.7
Mackereth, C.D.8
Saridakis, V.9
Ekiel, I.10
Kozlov, G.11
Maxwell, K.L.12
Wu, N.13
McIntosh, L.P.14
Gehring, K.15
Kennedy, M.A.16
Davidson, A.R.17
Pai, E.F.18
Gerstein, M.19
Edwards, A.M.20
Arrowsmith, C.H.21
more..
-
14
-
-
0034733908
-
The role of protein structure in genomics
-
Domingues, F. S., Koppensteiner, W. A., and Sippl, M. J. (2000) The role of protein structure in genomics, FEBS Lett. 476, 98-102.
-
(2000)
FEBS Lett.
, vol.476
, pp. 98-102
-
-
Domingues, F.S.1
Koppensteiner, W.A.2
Sippl, M.J.3
-
15
-
-
0028066936
-
Comparison of systematic search and database methods for constructing segments of protein structure
-
Fidelis, K., Stern, P. S., Bacon, D., and Moult, J. (1994) Comparison of systematic search and database methods for constructing segments of protein structure, Protein Eng. 7, 953-960.
-
(1994)
Protein Eng.
, vol.7
, pp. 953-960
-
-
Fidelis, K.1
Stern, P.S.2
Bacon, D.3
Moult, J.4
-
16
-
-
0022842039
-
Predicting antibody hypervariable loop conformations. II. Minimization and molecular dynamics studies of MCP603 from many randomly generated loop conformations
-
Fine, R., Wang, H., Shenkin, P., Yarmush, D., and Levinthal, C. (1986) Predicting antibody hypervariable loop conformations. II. Minimization and molecular dynamics studies of MCP603 from many randomly generated loop conformations, Proteins 1, 342-362.
-
(1986)
Proteins
, vol.1
, pp. 342-362
-
-
Fine, R.1
Wang, H.2
Shenkin, P.3
Yarmush, D.4
Levinthal, C.5
-
17
-
-
0033810049
-
Modeling of loops in protein structures
-
Fiser, A., Do, R. K., and Sali, A. (2000). Modeling of loops in protein structures, Protein Sci. 9, 1753-1773.
-
(2000)
Protein Sci.
, vol.9
, pp. 1753-1773
-
-
Fiser, A.1
Do, R.K.2
Sali, A.3
-
18
-
-
0027485083
-
Comparison of conformational characteristics in structurally similar protein pairs
-
Flores, T. P., Orengo, C. A., Moss, D. S., and Thornton, J. M. (1993) Comparison of conformational characteristics in structurally similar protein pairs, Protein Sci. 2, 1811-1826.
-
(1993)
Protein Sci.
, vol.2
, pp. 1811-1826
-
-
Flores, T.P.1
Orengo, C.A.2
Moss, D.S.3
Thornton, J.M.4
-
19
-
-
0019028066
-
Model for haptoglobin heavy chain based upon structural homology
-
Greer, J. (1980) Model for haptoglobin heavy chain based upon structural homology, Proc. Natl. Acad. Sci. USA 77(6), 3393-3397.
-
(1980)
Proc. Natl. Acad. Sci. USA
, vol.77
, Issue.6
, pp. 3393-3397
-
-
Greer, J.1
-
20
-
-
0033537993
-
GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences
-
doi:10.1006/jmbi.1999.2583
-
Jones, D. T. (1999) GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences, J. Mol. Biol. 287, 797-815, doi:10.1006/jmbi.1999.2583.
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 797-815
-
-
Jones, D.T.1
-
21
-
-
0034126813
-
Protein structure prediction in the post-genomic era
-
Jones, D. T. (2000) Protein structure prediction in the post-genomic era, Curr. Opin. Struct. Biol. 10, 371-379.
-
(2000)
Curr. Opin. Struct. Biol.
, vol.10
, pp. 371-379
-
-
Jones, D.T.1
-
22
-
-
0032876705
-
CASP3 comparative modeling evaluation
-
Jones, T. A., and Kleywegt, G. J. (1999) CASP3 comparative modeling evaluation, Proteins Suppl. 3, 30-46.
-
(1999)
Proteins Suppl.
, vol.3
, pp. 30-46
-
-
Jones, T.A.1
Kleywegt, G.J.2
-
23
-
-
0022701772
-
Using known substructures in protein model building and crystallography
-
Jones, T. A., and Thirup, S. (1986) Using known substructures in protein model building and crystallography, EMBO J. 5, 819-822.
-
(1986)
EMBO J.
, vol.5
, pp. 819-822
-
-
Jones, T.A.1
Thirup, S.2
-
24
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W., and Sander, C. (1983) Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features, Biopolymers 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
25
-
-
0034068863
-
Structural genomics of microbes: An objective
-
Kim, S. H. (2000) Structural genomics of microbes: An objective, Curr. Opin. Struct. Biol. 10, 380-383.
-
(2000)
Curr. Opin. Struct. Biol.
, vol.10
, pp. 380-383
-
-
Kim, S.H.1
-
26
-
-
0034655949
-
Survey and Summary: The morph server: A standardized system for analyzing and visualizing macromolecular motions in a database framework
-
Krebs, W. G., and Gerstein, M. (2000) Survey and Summary: The morph server: A standardized system for analyzing and visualizing macromolecular motions in a database framework, Nucleic Acids Res. 28, 1665-1675.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 1665-1675
-
-
Krebs, W.G.1
Gerstein, M.2
-
27
-
-
0033214836
-
Importance of anchor group positioning in protein loop prediction
-
Lessel, U., and Schomburg, D. (1999) Importance of anchor group positioning in protein loop prediction, Proteins 37, 56-64.
-
(1999)
Proteins
, vol.37
, pp. 56-64
-
-
Lessel, U.1
Schomburg, D.2
-
28
-
-
0033134684
-
Protein loops on structurally similar scaffolds: Database and conformational analysis
-
Li, W., Liu, Z., and Lai, L. (1999) Protein loops on structurally similar scaffolds: Database and conformational analysis, Biopolymers 49, 481-495.
-
(1999)
Biopolymers
, vol.49
, pp. 481-495
-
-
Li, W.1
Liu, Z.2
Lai, L.3
-
29
-
-
0031302732
-
Assessment of comparative modeling in CASP2
-
Martin, A. C., MacArthur, M. W., and Thornton, J. M. (1997) Assessment of comparative modeling in CASP2, Proteins Suppl. 1, 14-28.
-
(1997)
Proteins Suppl.
, vol.1
, pp. 14-28
-
-
Martin, A.C.1
MacArthur, M.W.2
Thornton, J.M.3
-
30
-
-
0033873929
-
Comparative protein structure modeling of genes and genomes
-
Marti-Renom, M. A., Stuart, A. C., Fiser, A., Sanchez, R., Melo, F., and Sali, A. (2000) Comparative protein structure modeling of genes and genomes, Annu. Rev. Biophys. Biomol. Struct 29, 291-325.
-
(2000)
Annu. Rev. Biophys. Biomol. Struct.
, vol.29
, pp. 291-325
-
-
Marti-Renom, M.A.1
Stuart, A.C.2
Fiser, A.3
Sanchez, R.4
Melo, F.5
Sali, A.6
-
31
-
-
0032536197
-
Conformations of the third hypervariable region in the VH domain of immunoglobulins
-
doi:10.1006/jmbi.1997.1442
-
Morea, V., Tramontano, A., Rustici, M., Chothia, C., and Lesk, A. M. (1998) Conformations of the third hypervariable region in the VH domain of immunoglobulins, J. Mol. Biol. 275, 269-294, doi:10.1006/jmbi.1997.1442.
-
(1998)
J. Mol. Biol.
, vol.275
, pp. 269-294
-
-
Morea, V.1
Tramontano, A.2
Rustici, M.3
Chothia, C.4
Lesk, A.M.5
-
32
-
-
0031297386
-
Critical assessment of methods of protein structure prediction (CASP): Round II
-
Moult, J., Hubbard, T., Bryant, S. H., Fidelis, K., and Pedersen, J. T. (1997) Critical assessment of methods of protein structure prediction (CASP): Round II, Proteins Suppl. 1, 2-6.
-
(1997)
Proteins Suppl.
, vol.1
, pp. 2-6
-
-
Moult, J.1
Hubbard, T.2
Bryant, S.H.3
Fidelis, K.4
Pedersen, J.T.5
-
33
-
-
0032606039
-
Critical assessment of methods of protein structure prediction (CASP): Round III
-
Moult, J., Hubbard, T., Fidelis, K., and Pedersen, J. T. (1999) Critical assessment of methods of protein structure prediction (CASP): Round III, Proteins Suppl. 3, 2-6.
-
(1999)
Proteins Suppl.
, vol.3
, pp. 2-6
-
-
Moult, J.1
Hubbard, T.2
Fidelis, K.3
Pedersen, J.T.4
-
34
-
-
0022788691
-
An algorithm for determining the conformation of polypeptide segments in proteins by systematic search
-
Moult, J., and James, M. N. (1986) An algorithm for determining the conformation of polypeptide segments in proteins by systematic search, Proteins 1, 146-163.
-
(1986)
Proteins
, vol.1
, pp. 146-163
-
-
Moult, J.1
James, M.N.2
-
35
-
-
84995046262
-
A large-scale experiment to assess protein structure prediction methods
-
Moult, J., Pedersen, J. T., Judson, R., and Fidelis, K. (1995) A large-scale experiment to assess protein structure prediction methods, Proteins 23, ii-v.
-
(1995)
Proteins
, vol.23
-
-
Moult, J.1
Pedersen, J.T.2
Judson, R.3
Fidelis, K.4
-
36
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin, A. G., Brenner, S. E., Hubbard, T., and Chothia, C. (1995) SCOP: A structural classification of proteins database for the investigation of sequences and structures, J. Mol. Biol. 247, 536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
37
-
-
0025501235
-
NRL-3D: A sequence-structure database derived from the protein data bank (PDB) and searchable within the PIR environment
-
Pattabiraman, N., Namboodiri, K., Lowrey, A., and Gaber, B. P. (1990) NRL-3D: A sequence-structure database derived from the protein data bank (PDB) and searchable within the PIR environment, Protein Seq. Data Anal. 3, 387-405.
-
(1990)
Protein Seq. Data Anal.
, vol.3
, pp. 387-405
-
-
Pattabiraman, N.1
Namboodiri, K.2
Lowrey, A.3
Gaber, B.P.4
-
38
-
-
0033135619
-
Prediction of loop geometries using a generalized born model of solvation effects
-
Rapp, C. S., and Friesner, R. A. (1999) Prediction of loop geometries using a generalized born model of solvation effects, Proteins 35, 173-183.
-
(1999)
Proteins
, vol.35
, pp. 173-183
-
-
Rapp, C.S.1
Friesner, R.A.2
-
39
-
-
0033563668
-
Crystal structure of a phycourobilin-containing phy-coerythrin at 1.90-Å resolution
-
doi:10.1006/jsbi.1999.4106
-
Ritter, S., Hiller, R. G., Wrench, P. M., Welte, W., and Diederichs, K. (1999) Crystal structure of a phycourobilin-containing phy-coerythrin at 1.90-Å resolution, J. Struct. Biol. 126, 86-97, doi:10.1006/jsbi.1999.4106.
-
(1999)
J. Struct. Biol
, vol.126
, pp. 86-97
-
-
Ritter, S.1
Hiller, R.G.2
Wrench, P.M.3
Welte, W.4
Diederichs, K.5
-
40
-
-
0031909873
-
Recognition of analogous and homologous protein folds -Assessment of prediction success and associated alignment accuracy using empirical substitution matrices
-
Russell, R. B., Saqi, M. A., Bates, P. A., Sayle, R. A., and Sternberg, M. J. (1998) Recognition of analogous and homologous protein folds-Assessment of prediction success and associated alignment accuracy using empirical substitution matrices, Protein Eng. 11, 1-9.
-
(1998)
Protein Eng.
, vol.11
, pp. 1-9
-
-
Russell, R.B.1
Saqi, M.A.2
Bates, P.A.3
Sayle, R.A.4
Sternberg, M.J.5
-
41
-
-
0031787022
-
100,000 protein structures for the biologist
-
Sali, A. (1998) 100,000 protein structures for the biologist. Nat. Struct. Biol. 5, 1029-1032.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 1029-1032
-
-
Sali, A.1
-
42
-
-
0033764251
-
Protein structure modeling for structural genomics
-
Sanchez, R., Pieper, U., Melo, F., Eswar, N., Marti-Renom, M. A., Madhusudhan, M. S., Mirkovic, N., and Sali, A. (2000a) Protein structure modeling for structural genomics, Nat. Struct. Biol. 7(Suppl.), 986-990.
-
(2000)
Nat. Struct. Biol.
, vol.7
, Issue.SUPPL.
, pp. 986-990
-
-
Sanchez, R.1
Pieper, U.2
Melo, F.3
Eswar, N.4
Marti-Renom, M.A.5
Madhusudhan, M.S.6
Mirkovic, N.7
Sali, A.8
-
43
-
-
0343920731
-
MODBASE, a database of annotated comparative protein structure models
-
Sanchez, R., Pieper, U., Mirkovic, N., de Bakker, P. I., Wittenstein, E., and Sali, A. (2000b) MODBASE, a database of annotated comparative protein structure models, Nucleic Acids Res. 28, 250-253.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 250-253
-
-
Sanchez, R.1
Pieper, U.2
Mirkovic, N.3
De Bakker, P.I.4
Wittenstein, E.5
Sali, A.6
-
44
-
-
0032506030
-
Large-scale protein structure modeling of the Saccharomyces cerevisiae genome
-
Sanchez, R., and Sali, A. (1998) Large-scale protein structure modeling of the Saccharomyces cerevisiae genome, Proc. Natl. Acad. Sci. USA 95, 13597-13602.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 13597-13602
-
-
Sanchez, R.1
Sali, A.2
-
45
-
-
0026030641
-
Database of homology-derived protein structures and the structural meaning of sequence alignment
-
Sander, C., and Schneider, R. (1991) Database of homology-derived protein structures and the structural meaning of sequence alignment, Proteins 9, 56-68.
-
(1991)
Proteins
, vol.9
, pp. 56-68
-
-
Sander, C.1
Schneider, R.2
-
46
-
-
0034237578
-
Large-scale comparison of protein sequence alignment algorithms with structure alignments
-
Sauder, J. M., Arthur, J. W., and Dunbrack, R. L. (2000) Large-scale comparison of protein sequence alignment algorithms with structure alignments, Proteins 40(1), 6-22.
-
(2000)
Proteins
, vol.40
, Issue.1
, pp. 6-22
-
-
Sauder, J.M.1
Arthur, J.W.2
Dunbrack, R.L.3
-
47
-
-
0034677965
-
Structural genomics offers high-speed look at proteins
-
Service, R. F. (2000) Structural genomics offers high-speed look at proteins, Science 287, 1954- 1956.
-
(2000)
Science
, vol.287
, pp. 1954-1956
-
-
Service, R.F.1
-
48
-
-
0030628304
-
Hierarchical protein structure superposition using both secondary structure and atomic representations
-
Singh, A. P., and Brutlag, D. L. (1997) Hierarchical protein structure superposition using both secondary structure and atomic representations, Proc. Int. Conf. Intell. Syst. Mol. Biol. 5, 284-293.
-
(1997)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.5
, pp. 284-293
-
-
Singh, A.P.1
Brutlag, D.L.2
-
49
-
-
0032474475
-
The structure of the monomeric porcine odorant binding protein sheds light on the domain swapping mechanism
-
Spinelli, S., Ramoni, R., Grolli, S., Bonicel, J., Cambillau, C., and Tegoni, M. (1998) The structure of the monomeric porcine odorant binding protein sheds light on the domain swapping mechanism, Biochemistry 37, 7913-7918.
-
(1998)
Biochemistry
, vol.37
, pp. 7913-7918
-
-
Spinelli, S.1
Ramoni, R.2
Grolli, S.3
Bonicel, J.4
Cambillau, C.5
Tegoni, M.6
-
50
-
-
0033047094
-
Crystal structure of C-phycocyanin from Cyanidium caldarium provides a new perspective on phycobilisome assembly
-
Stec, B., Troxler, R. F., and Teeter, M. M. (1999) Crystal structure of C-phycocyanin from Cyanidium caldarium provides a new perspective on phycobilisome assembly, Biophys. J. 76, 2912-2921.
-
(1999)
Biophys. J.
, vol.76
, pp. 2912-2921
-
-
Stec, B.1
Troxler, R.F.2
Teeter, M.M.3
-
51
-
-
0033150825
-
Advances in structural genomics
-
Teichmann, S. A., Chothia, C., and Gerstein, M. (1999) Advances in structural genomics, Curr. Opin. Struct. Biol. 9, 390-399.
-
(1999)
Curr. Opin. Struct. Biol.
, vol.9
, pp. 390-399
-
-
Teichmann, S.A.1
Chothia, C.2
Gerstein, M.3
-
52
-
-
0033168097
-
A comprehensive comparison of multiple sequence alignment programs
-
Thompson, J. D., Plewniak, F., and Poch, O. (1999) A comprehensive comparison of multiple sequence alignment programs, Nucleic Acids Res. 27, 2682-2690.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2682-2690
-
-
Thompson, J.D.1
Plewniak, F.2
Poch, O.3
-
53
-
-
0025063143
-
Framework residue 71 is a major determinant of the position and conformation of the second hypervariable region in the VH domains of immunoglobulins
-
Tramontano, A., Chothia, C., and Lesk, A. M. (1990) Framework residue 71 is a major determinant of the position and conformation of the second hypervariable region in the VH domains of immunoglobulins, J. Mol. Biol. 215, 175-182.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 175-182
-
-
Tramontano, A.1
Chothia, C.2
Lesk, A.M.3
-
54
-
-
0026696412
-
Common features of the conformations of antigen-binding loops in immunoglobulins and application to modeling loop conformations
-
Tramontano, A., and Lesk, A. M. (1992) Common features of the conformations of antigen-binding loops in immunoglobulins and application to modeling loop conformations, Proteins 13, 231-245.
-
(1992)
Proteins
, vol.13
, pp. 231-245
-
-
Tramontano, A.1
Lesk, A.M.2
-
55
-
-
0031564640
-
PDB-based protein loop prediction: Parameters for selection and methods for optimization
-
doi:10.1006/jmbi. 1996.0857
-
van Vlijmen, H. W., and Karplus, M. (1997) PDB-based protein loop prediction: Parameters for selection and methods for optimization, J. Mol. Biol. 267, 975-1001, doi:10.1006/jmbi. 1996.0857.
-
(1997)
J. Mol. Biol
, vol.267
, pp. 975-1001
-
-
Van Vlijmen, H.W.1
Karplus, M.2
-
56
-
-
0032606076
-
Some measures of comparative performance in the three CASPs
-
Venclovas, C., Zemla, A., Fidelis, K., and Moult, J. (1999) Some measures of comparative performance in the three CASPs, Proteins Suppl. (3), 231-237.
-
(1999)
Proteins Suppl.
, Issue.3
, pp. 231-237
-
-
Venclovas, C.1
Zemla, A.2
Fidelis, K.3
Moult, J.4
-
57
-
-
0033529844
-
Evolution of a light-harvesting protein by addition of new subunits and rearrangement of conserved elements: Crystal structure of a cryptophyte phycoerythrin at 1.63-Å resolution
-
Wilk, K. E., Harrop, S. J., Jankova, L., Edler, D., Keenan, G., Sharples, F., Hiller, R. G., and Curmi, P. M. (1999) Evolution of a light-harvesting protein by addition of new subunits and rearrangement of conserved elements: Crystal structure of a cryptophyte phycoerythrin at 1.63-Å resolution, Proc. Natl. Acad. Sci. USA 96, 8901-8906.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 8901-8906
-
-
Wilk, K.E.1
Harrop, S.J.2
Jankova, L.3
Edler, D.4
Keenan, G.5
Sharples, F.6
Hiller, R.G.7
Curmi, P.M.8
-
58
-
-
0034677669
-
Assessing annotation transfer for genomics: Quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores
-
doi:10.1006/jmbi.2000.3550
-
Wilson, C. A., Kreychman, J., and Gerstein, M. (2000) Assessing annotation transfer for genomics: Quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores, J. Mol. Biol. 297, 233-249, doi:10.1006/jmbi.2000.3550.
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 233-249
-
-
Wilson, C.A.1
Kreychman, J.2
Gerstein, M.3
-
59
-
-
0033603394
-
New efficient statistical sequence-dependent structure prediction of short to medium-sized protein loops based on an exhaustive loop classification
-
doi:10.1006/jmbi. 1999.2826
-
Wojcik, J., Mornon, J. P., and Chomilier, J. (1999) New efficient statistical sequence-dependent structure prediction of short to medium-sized protein loops based on an exhaustive loop classification, J. Mol. Biol. 289, 1469-1490, doi:10.1006/jmbi. 1999.2826.
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 1469-1490
-
-
Wojcik, J.1
Mornon, J.P.2
Chomilier, J.3
-
60
-
-
0034674175
-
Estimating the number of protein folds and families from complete genome data
-
doi:10.1006/jmbi.2000.3786
-
Wolf, Y. I., Grishin, N. V., and Koonin, E. V. (2000) Estimating the number of protein folds and families from complete genome data, J. Mol. Biol. 299, 897- 905, doi:10.1006/jmbi.2000.3786.
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 897-905
-
-
Wolf, Y.I.1
Grishin, N.V.2
Koonin, E.V.3
-
61
-
-
0030870179
-
Relations of the numbers of protein sequences, families and folds
-
Zhang, C. T. (1997) Relations of the numbers of protein sequences, families and folds, Protein Eng. 10, 757-761.
-
(1997)
Protein Eng.
, vol.10
, pp. 757-761
-
-
Zhang, C.T.1
-
62
-
-
0029871163
-
Accuracy and reliability of the scaling-relaxation method for loop closure: An evaluation based on extensive and multiple copy conformational samplings
-
Zheng, Q., and Kyle, D. J. (1996) Accuracy and reliability of the scaling-relaxation method for loop closure: An evaluation based on extensive and multiple copy conformational samplings, Proteins 24, 209-217.
-
(1996)
Proteins
, vol.24
, pp. 209-217
-
-
Zheng, Q.1
Kyle, D.J.2
|