-
1
-
-
0026338873
-
Restriction and modification systems
-
Wilson, G.G. & Murray, N.E. (1991) Restriction and modification systems. Annu. Rev. Genet. 25, 585-627.
-
(1991)
Annu. Rev. Genet.
, vol.25
, pp. 585-627
-
-
Wilson, G.G.1
Murray, N.E.2
-
2
-
-
0001875393
-
Host specificity of DNA produced by Escherichia coli. Host controlled modification of bacteriophage λ
-
Arber, W. & Dussoix, D. (1962) Host specificity of DNA produced by Escherichia coli. Host controlled modification of bacteriophage λ. J. Mol. Biol. 5, 18-36.
-
(1962)
J. Mol. Biol.
, vol.5
, pp. 18-36
-
-
Arber, W.1
Dussoix, D.2
-
3
-
-
0018309796
-
Promotion and limitation of genetic exchange
-
Arber, W. (1979) Promotion and limitation of genetic exchange. Science 205, 361-365.
-
(1979)
Science
, vol.205
, pp. 361-365
-
-
Arber, W.1
-
4
-
-
0034054227
-
Regulation of competence for genetic transformation in Streptococcus pneumoniae: Expression of dpnA, a late competence gene encoding a DNA methyltransferase of the DpnII restriction system
-
Lacks, S.A., Ayalew, S., de la Campa, A.G. & Greenberg, B. (2000) Regulation of competence for genetic transformation in Streptococcus pneumoniae: Expression of dpnA, a late competence gene encoding a DNA methyltransferase of the DpnII restriction system. Mol. Microbiol. 35, 1089-1098.
-
(2000)
Mol. Microbiol.
, vol.35
, pp. 1089-1098
-
-
Lacks, S.A.1
Ayalew, S.2
De La Campa, A.G.3
Greenberg, B.4
-
5
-
-
0032761905
-
Shaping the genome-restriction-modification systems as mobile genetic elements
-
Kobayashi, I., Nobusato, A., Kobayashi-Takahashi, N. & Uchiyama, I. (1999) Shaping the genome-restriction-modification systems as mobile genetic elements. Curr. Opin. Genet. Dev. 9, 649-656.
-
(1999)
Curr. Opin. Genet. Dev.
, vol.9
, pp. 649-656
-
-
Kobayashi, I.1
Nobusato, A.2
Kobayashi-Takahashi, N.3
Uchiyama, I.4
-
6
-
-
0000010735
-
Bacterial DNA methyltranferases
-
Cheng, X. et al., eds. World Scientific Inc., Singapore
-
Dryden, D.T. (1999) Bacterial DNA methyltranferases; in: S-Adenosylmethionine-dependent Methyltransferases: Structures and Functions (Cheng, X. et al., eds.) pp. 283-340, World Scientific Inc., Singapore.
-
(1999)
S-Adenosylmethionine-dependent Methyltransferases: Structures and Functions
, pp. 283-340
-
-
Dryden, D.T.1
-
7
-
-
0034130457
-
Type I restriction systems: Sophisticated molecular machines (a legacy of Bertani and Weigle)
-
Murray, N.B. (2000) Type I restriction systems: Sophisticated molecular machines (a legacy of Bertani and Weigle). Microbiol. Mol. Biol. Rev. 64, 412-434.
-
(2000)
Microbiol. Mol. Biol. Rev.
, vol.64
, pp. 412-434
-
-
Murray, N.B.1
-
8
-
-
0033627844
-
ATP-dependent restriction enzymes
-
Rao, D.N., Saha, S. & Krishnamurthy, V. (2000) ATP-dependent restriction enzymes. Prog. Nucleic Acid Res. Mol. Biol. 64, 1-63.
-
(2000)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.64
, pp. 1-63
-
-
Rao, D.N.1
Saha, S.2
Krishnamurthy, V.3
-
9
-
-
0030911133
-
Recognition and cleavage of DNA by type-II restriction endonucleases
-
Pingoud, A. and Jeltsch, A. (1997) Recognition and cleavage of DNA by type-II restriction endonucleases. Eur. J. Biochem. 246, 1-22.
-
(1997)
Eur. J. Biochem.
, vol.246
, pp. 1-22
-
-
Pingoud, A.1
Jeltsch, A.2
-
10
-
-
0035883723
-
Structure and function of type II restriction endonucleases
-
Pingoud, A. & Jeltsch, A. (2001) Structure and function of type II restriction endonucleases. Nucleic Acids Res. 29, 3705-3727.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 3705-3727
-
-
Pingoud, A.1
Jeltsch, A.2
-
11
-
-
0035028794
-
Enzymes that keep DNA under control: Meeting: DNA enzymes: Structures and mechanisms
-
Pingoud, A., Jeltsch, A., Maxwell, A. & Sherratt, D. (2001) Enzymes that keep DNA under control: Meeting: DNA enzymes: structures and mechanisms. EMBO Rep. 2, 271-276.
-
(2001)
EMBO Rep.
, vol.2
, pp. 271-276
-
-
Pingoud, A.1
Jeltsch, A.2
Maxwell, A.3
Sherratt, D.4
-
12
-
-
0033538480
-
On the structure and operation of type I DNA restriction enzymes
-
Davies, G.P., Martin, I., Sturrock, S.S., Cronshaw, A., Murray, N.B. & Dryden, D.T. (1999) On the structure and operation of type I DNA restriction enzymes. J. Mol. Biol. 290, 565-579.
-
(1999)
J. Mol. Biol.
, vol.290
, pp. 565-579
-
-
Davies, G.P.1
Martin, I.2
Sturrock, S.S.3
Cronshaw, A.4
Murray, N.B.5
Dryden, D.T.6
-
13
-
-
0031049939
-
The in vitro assembly of the EcoKI type IDNA restriction/modification enzyme and its in vivo implications
-
Dryden, D.T., Cooper, L.P., Thorpe, P.H. & Byron, O. (1997) The in vitro assembly of the EcoKI type IDNA restriction/modification enzyme and its in vivo implications. Biochemistry, 36, 1065-1076.
-
(1997)
Biochemistry
, vol.36
, pp. 1065-1076
-
-
Dryden, D.T.1
Cooper, L.P.2
Thorpe, P.H.3
Byron, O.4
-
14
-
-
0032932374
-
Direct observation of DNA translocation and cleavage by the EcoKI endonuclease using atomic force microscopy
-
Ellis, D.J., Dryden, D.T., Berge, T., Edwardson, J.M. & Henderson, R.M. (1999) Direct observation of DNA translocation and cleavage by the EcoKI endonuclease using atomic force microscopy. Nat. Struct. Biol. 6, 15-17.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 15-17
-
-
Ellis, D.J.1
Dryden, D.T.2
Berge, T.3
Edwardson, J.M.4
Henderson, R.M.5
-
15
-
-
0018835269
-
DNA translocation by the restriction enzyme from E. Coli K
-
Yuan, R., Hamilton, D.L. & Burckhardt, J. (1980) DNA translocation by the restriction enzyme from E. coli K. Cell 20, 237-244.
-
(1980)
Cell
, vol.20
, pp. 237-244
-
-
Yuan, R.1
Hamilton, D.L.2
Burckhardt, J.3
-
16
-
-
0033918211
-
Translocation-independent dimerization of the EcoKI endonuclease visualized by atomic force microscopy
-
Berge, T., Ellis, D.J., Dryden, D.T., Edwardson, J.M. & Henderson, R.M. (2000) Translocation-independent dimerization of the EcoKI endonuclease visualized by atomic force microscopy. Biophys. J. 79, 479-484.
-
(2000)
Biophys. J.
, vol.79
, pp. 479-484
-
-
Berge, T.1
Ellis, D.J.2
Dryden, D.T.3
Edwardson, J.M.4
Henderson, R.M.5
-
17
-
-
0015192625
-
DNA restriction and modification mechanisms in bacteria
-
Boyer, H.W. (1971) DNA restriction and modification mechanisms in bacteria. Annu. Rev. Microbiol. 25, 153-176.
-
(1971)
Annu. Rev. Microbiol.
, vol.25
, pp. 153-176
-
-
Boyer, H.W.1
-
18
-
-
0018216571
-
Purification and properties of a new restriction endonuclease from Haemophilus influenzae Rf
-
Kauc, L. & Piekarowicz, A. (1978) Purification and properties of a new restriction endonuclease from Haemophilus influenzae Rf. Eur. J. Biochem. 92, 417-426.
-
(1978)
Eur. J. Biochem.
, vol.92
, pp. 417-426
-
-
Kauc, L.1
Piekarowicz, A.2
-
19
-
-
0029045067
-
Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis
-
Meisel, A., Mackeldanz, P., Bickle, T.A., Kruger, D.H. & Schroeder, C. (1995) Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis. EMBO J. 14, 2958-2966.
-
(1995)
EMBO J.
, vol.14
, pp. 2958-2966
-
-
Meisel, A.1
Mackeldanz, P.2
Bickle, T.A.3
Kruger, D.H.4
Schroeder, C.5
-
20
-
-
0035967885
-
S-Adenosyl-L-methionine is required for DNA cleavage by type III restriction enzymes
-
Bist, P., Sistla, S., Krishnamurthy, V., Acharya, A., Chandrakala, B. & Rao, D.N. (2001) S-Adenosyl-L-methionine is required for DNA cleavage by type III restriction enzymes. J Mol. Biol. 310, 93-109.
-
(2001)
J Mol. Biol.
, vol.310
, pp. 93-109
-
-
Bist, P.1
Sistla, S.2
Krishnamurthy, V.3
Acharya, A.4
Chandrakala, B.5
Rao, D.N.6
-
21
-
-
0026584744
-
Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage
-
Meisel, A., Bickle, T.A., Kruger, D.H. & Schroeder, C. (1992) Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage. Nature 355, 467-469.
-
(1992)
Nature
, vol.355
, pp. 467-469
-
-
Meisel, A.1
Bickle, T.A.2
Kruger, D.H.3
Schroeder, C.4
-
22
-
-
0035936699
-
Subunit assembly and mode of DNA cleavage of the type III restriction endonucleases EcoP1I and EcoP15I
-
Janscak, P., Sandmeier, U., Szczelkun, M.D. & Bickle, T.A. (2001) Subunit assembly and mode of DNA cleavage of the type III restriction endonucleases EcoP1I and EcoP15I. J. Mol. Biol. 306, 417-431.
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 417-431
-
-
Janscak, P.1
Sandmeier, U.2
Szczelkun, M.D.3
Bickle, T.A.4
-
23
-
-
0033954256
-
The Protein Data Bank
-
Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N. & Bourne, P.E. (2000) The Protein Data Bank. Nucleic Acids Res. 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
26
-
-
0026078020
-
Stereochemical studies of the C-methylation of deoxycytidine catalyzed by HhaI methylase and the N-methylation of deoxyadenosine catalyzed by EcoRI methylase
-
Ho, D.K., Wu, J.C., Santi, D.V. & Floss, H.G. (1991) Stereochemical studies of the C-methylation of deoxycytidine catalyzed by HhaI methylase and the N-methylation of deoxyadenosine catalyzed by EcoRI methylase. Arch. Biochem. Biophys. 284, 264-269.
-
(1991)
Arch. Biochem. Biophys.
, vol.284
, pp. 264-269
-
-
Ho, D.K.1
Wu, J.C.2
Santi, D.V.3
Floss, H.G.4
-
27
-
-
0030473610
-
Chemistry and biology of DNA methyltransferases
-
Ahmad, I. & Rao, D.N. (1996) Chemistry and biology of DNA methyltransferases. Crit. Rev. Biochem. Mol. Biol. 31, 361-380.
-
(1996)
Crit. Rev. Biochem. Mol. Biol.
, vol.31
, pp. 361-380
-
-
Ahmad, I.1
Rao, D.N.2
-
28
-
-
0030612472
-
Structure of PvuII DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment
-
Gong, W., O'Gara, M., Blumenthal, R.M. & Cheng, X. (1997) Structure of PvuII DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment. Nucleic Acids Res. 25, 2702-2715.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 2702-2715
-
-
Gong, W.1
O'Gara, M.2
Blumenthal, R.M.3
Cheng, X.4
-
29
-
-
0001855408
-
Eukaryotic DNA methyltransferases
-
Cheng, X. et al., eds. World Scientific Inc., Singapore
-
Vertino, P.M. (1999) Eukaryotic DNA methyltransferases; in: S-Adenosylmethionine-dependent Methyltransferases: Structures and Functions (Cheng, X. et al., eds.) pp. 341-372, World Scientific Inc., Singapore.
-
(1999)
S-Adenosylmethionine-dependent Methyltransferases: Structures and Functions
, pp. 341-372
-
-
Vertino, P.M.1
-
30
-
-
0027159254
-
The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments
-
Winkler, F.K., Banner, D.W., Oefner, C., Tsernoglou, D., Brown, R.S., Heathman, S.P., Bryan, R.K., Martin, P.D., Petratos, K. & Wilson, K.S. (1993) The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments. EMBO J. 12, 1781-1795.
-
(1993)
EMBO J.
, vol.12
, pp. 1781-1795
-
-
Winkler, F.K.1
Banner, D.W.2
Oefner, C.3
Tsernoglou, D.4
Brown, R.S.5
Heathman, S.P.6
Bryan, R.K.7
Martin, P.D.8
Petratos, K.9
Wilson, K.S.10
-
31
-
-
0028024850
-
Structure of PvuII endonuclease with cognate DNA
-
Cheng, X., Balendiran, K., Schildkraut, I. & Anderson, J.E. (1994) Structure of PvuII endonuclease with cognate DNA. EMBO J. 13, 3927-3935.
-
(1994)
EMBO J.
, vol.13
, pp. 3927-3935
-
-
Cheng, X.1
Balendiran, K.2
Schildkraut, I.3
Anderson, J.E.4
-
32
-
-
0025187081
-
Refinement of EcoRI endonuclease crystal structure: A revised protein chain tracing
-
Kim, Y., Grable, J.C., Love, R., Green, P.J. & Rosenberg, J.M. (1990) Refinement of EcoRI endonuclease crystal structure: A revised protein chain tracing. Science 249, 1307-1309.
-
(1990)
Science
, vol.249
, pp. 1307-1309
-
-
Kim, Y.1
Grable, J.C.2
Love, R.3
Green, P.J.4
Rosenberg, J.M.5
-
33
-
-
0029048413
-
Structure of BamHI endonuclease bound to DNA: Partial folding and unfolding on DNA binding
-
Newman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I. & Aggarwal, A.K. (1995) Structure of BamHI endonuclease bound to DNA: Partial folding and unfolding on DNA binding. Science 269, 656-663.
-
(1995)
Science
, vol.269
, pp. 656-663
-
-
Newman, M.1
Strzelecka, T.2
Dorner, L.F.3
Schildkraut, I.4
Aggarwal, A.K.5
-
34
-
-
0032530311
-
Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequence
-
Newman, M., Lunnen, K., Wilson, G., Greci, J., Schildkraut, I. & Phillips, S.E. (1998) Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequence. EMBO J. 17, 5466-5476.
-
(1998)
EMBO J.
, vol.17
, pp. 5466-5476
-
-
Newman, M.1
Lunnen, K.2
Wilson, G.3
Greci, J.4
Schildkraut, I.5
Phillips, S.E.6
-
35
-
-
0032519309
-
Cloning and analysis of the four genes coding for Bpu10I restriction-modification enzymes
-
Stankevicius, K., Lubys, A., Timinskas, A., Vaitkevicius, D. & Janulaitis, A. (1998) Cloning and analysis of the four genes coding for Bpu10I restriction-modification enzymes. Nucleic Acids Res. 26, 1084-1091.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 1084-1091
-
-
Stankevicius, K.1
Lubys, A.2
Timinskas, A.3
Vaitkevicius, D.4
Janulaitis, A.5
-
36
-
-
0033984761
-
Cloning, expression and purification of a thermostable nonhomodimeric restriction enzyme, BslI
-
Hsieh, P.C., Xiao, J.P., O'loane, D. & Xu, S.Y. (2000) Cloning, expression and purification of a thermostable nonhomodimeric restriction enzyme, BslI. J Bacteriol. 182, 949-955.
-
(2000)
J Bacteriol.
, vol.182
, pp. 949-955
-
-
Hsieh, P.C.1
Xiao, J.P.2
O'loane, D.3
Xu, S.Y.4
-
37
-
-
0024284313
-
EcoRII can be activated to cleave refractory DNA recognition sites
-
Kruger, D.H., Barcak, G.J., Reuter, M. & Smith, H.O. (1988) EcoRII can be activated to cleave refractory DNA recognition sites. Nucleic Acids Res. 16, 3997-4008.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 3997-4008
-
-
Kruger, D.H.1
Barcak, G.J.2
Reuter, M.3
Smith, H.O.4
-
38
-
-
0034660061
-
Crystal structure of NaeI-an evolutionary bridge between DNA endonuclease and topoisomerase
-
Huai, Q., Colandene, J.D., Chen, Y., Luo, F., Zhao, Y., Topal, M.D. & Ke, H. (2000) Crystal structure of NaeI-an evolutionary bridge between DNA endonuclease and topoisomerase. EMBO J. 19, 3110-3118.
-
(2000)
EMBO J.
, vol.19
, pp. 3110-3118
-
-
Huai, Q.1
Colandene, J.D.2
Chen, Y.3
Luo, F.4
Zhao, Y.5
Topal, M.D.6
Ke, H.7
-
39
-
-
0033818703
-
Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA
-
Deibert, M., Grazulis, S., Sasnauskas, G., Siksnys, V. & Huber, R. (2000) Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA. Nat. Struct. Biol. 7, 792-799.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 792-799
-
-
Deibert, M.1
Grazulis, S.2
Sasnauskas, G.3
Siksnys, V.4
Huber, R.5
-
40
-
-
0033040499
-
DNA restriction dependent on two recognition sites: Activities of the SfiI restriction-modification system in Escherichia coli
-
Bilcock, D.T. & Halford, S.E. (1999) DNA restriction dependent on two recognition sites: Activities of the SfiI restriction-modification system in Escherichia coli. Mol. Microbiol. 31, 1243-1254.
-
(1999)
Mol. Microbiol.
, vol.31
, pp. 1243-1254
-
-
Bilcock, D.T.1
Halford, S.E.2
-
41
-
-
0025797325
-
Class-US restriction enzymes - A review
-
Szybalski, W., Kim, S.C., Hasan, N. & Podhajska, A.J. (1991) Class-US restriction enzymes - a review. Gene 100, 13-26.
-
(1991)
Gene
, vol.100
, pp. 13-26
-
-
Szybalski, W.1
Kim, S.C.2
Hasan, N.3
Podhajska, A.J.4
-
42
-
-
0032167717
-
FokI dimerization is required for DNA cleavage
-
Bitinaite, J., Wah, D.A., Aggarwal, A.K. & Schildkraut, I. (1998) FokI dimerization is required for DNA cleavage. Proc. Natl. Acad. Sci U.S.A. 95, 10570-10575.
-
(1998)
Proc. Natl. Acad. Sci U.S.A.
, vol.95
, pp. 10570-10575
-
-
Bitinaite, J.1
Wah, D.A.2
Aggarwal, A.K.3
Schildkraut, I.4
-
43
-
-
0035946911
-
FokI requires two specific DNA sites for cleavage
-
Vanamee, E.S., Santagata, S. & Aggarwal, A.K. (2001) FokI requires two specific DNA sites for cleavage. J. Mol. Biol. 309, 69-78.
-
(2001)
J. Mol. Biol.
, vol.309
, pp. 69-78
-
-
Vanamee, E.S.1
Santagata, S.2
Aggarwal, A.K.3
-
45
-
-
0031960121
-
Chimeric restriction enzyme: Gal4 fusion to FokI cleavage domain
-
Kim, Y.G., Smith, J., Durgesha, M. & Chandrasegaran, S. (1998) Chimeric restriction enzyme: Gal4 fusion to FokI cleavage domain. Biol. Chem. 379, 489-495.
-
(1998)
Biol. Chem.
, vol.379
, pp. 489-495
-
-
Kim, Y.G.1
Smith, J.2
Durgesha, M.3
Chandrasegaran, S.4
-
46
-
-
0032876974
-
Chimeric restriction enzymes: What is next?
-
Chandrasegaran, S. & Smith, J. (1999) Chimeric restriction enzymes: what is next? Biol. Chem. 380, 841-848.
-
(1999)
Biol. Chem.
, vol.380
, pp. 841-848
-
-
Chandrasegaran, S.1
Smith, J.2
-
47
-
-
0034529393
-
Characterization of the specific DNA nicking activity of restriction endonuclease N.BstNBI
-
Morgan, R.D., Calvet, C., Demeter, M., Agra, R. & Kong, H. (2000) Characterization of the specific DNA nicking activity of restriction endonuclease N.BstNBI. Biol. Chem. 381, 1123-1125.
-
(2000)
Biol. Chem.
, vol.381
, pp. 1123-1125
-
-
Morgan, R.D.1
Calvet, C.2
Demeter, M.3
Agra, R.4
Kong, H.5
-
48
-
-
0035875116
-
The nicking endonuclease N.BstNBI is closely related to Type Us restriction endonucleases MlyI and PleI
-
Higgins, L.S., Besnier, C. & Kong, H. (2001) The nicking endonuclease N.BstNBI is closely related to Type Us restriction endonucleases MlyI and PleI. Nucleic Acids Res. 29, 2492-2501.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2492-2501
-
-
Higgins, L.S.1
Besnier, C.2
Kong, H.3
-
49
-
-
0030749234
-
The Neisseria gonorrhoeae S.NgoVIII restriction/modification system: A type Us system homologous to the Haemophilus parahaemolyticus HphI restriction/modification system
-
Gunn, J.S. & Stein, D.C. (1997) The Neisseria gonorrhoeae S.NgoVIII restriction/modification system: A type Us system homologous to the Haemophilus parahaemolyticus HphI restriction/modification system. Nucleic Acids Res. 25, 4147-4152.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4147-4152
-
-
Gunn, J.S.1
Stein, D.C.2
-
50
-
-
0034648019
-
Specificity of DNA binding and methylation by the M.FokI DNA methyltransferase
-
Friedrich, T., Fatemi, M., Gowhar, H., Leismann, O. & Jeltsch, A. (2000) Specificity of DNA binding and methylation by the M.FokI DNA methyltransferase. Biochim. Biophys. Acta 1480, 145-159.
-
(2000)
Biochim. Biophys. Acta
, vol.1480
, pp. 145-159
-
-
Friedrich, T.1
Fatemi, M.2
Gowhar, H.3
Leismann, O.4
Jeltsch, A.5
-
51
-
-
0026613987
-
Purification and properties of the Eco57I restriction endonuclease and methylase-prototypes of a new class (type IV)
-
Janulaitis, A., Petrusyte, M., Maneliene, Z., Klimasauskas, S. & Butkus, V. (1992) Purification and properties of the Eco57I restriction endonuclease and methylase-prototypes of a new class (type IV). Nucleic Acids Res. 20, 6043-6049.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 6043-6049
-
-
Janulaitis, A.1
Petrusyte, M.2
Maneliene, Z.3
Klimasauskas, S.4
Butkus, V.5
-
52
-
-
0035865840
-
Characterization of BseMII, a new type IV restriction-modification system, which recognizes the pentanucleotide sequence 5′-CTCAG(NX 10/8)
-
Jurenaite-Urbanaviciene, S., Kazlauskiene, R., Urbelyte, V., Maneliene, Z., Petrusyte, M., Lubys, A. & Janulaitis, A. (2001) Characterization of BseMII, a new type IV restriction-modification system, which recognizes the pentanucleotide sequence 5′-CTCAG(NX 10/8). Nucleic Acids Res. 29, 895-903.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 895-903
-
-
Jurenaite-Urbanaviciene, S.1
Kazlauskiene, R.2
Urbelyte, V.3
Maneliene, Z.4
Petrusyte, M.5
Lubys, A.6
Janulaitis, A.7
-
53
-
-
0026468485
-
Cloning and sequence analysis of the genes coding for Eco57I type IV restriction-modification enzymes
-
Janulaitis, A., Vaisvila, R., Timinskas, A., Klimasauskas, S. & Butkus, V. (1992) Cloning and sequence analysis of the genes coding for Eco57I type IV restriction-modification enzymes. Nucleic Acids Res. 20, 6051-6056.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 6051-6056
-
-
Janulaitis, A.1
Vaisvila, R.2
Timinskas, A.3
Klimasauskas, S.4
Butkus, V.5
-
54
-
-
0032546734
-
Analyzing the functional organization of a novel restriction modification system, the BcgI system
-
Kong, H. (1998) Analyzing the functional organization of a novel restriction modification system, the BcgI system. J. Mol. Biol. 279, 823-832.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 823-832
-
-
Kong, H.1
-
55
-
-
0029065991
-
Two novel restriction endonucleases from Campylobacter jejuni
-
Vitor, J.M. & Morgan, R.D. (1995) Two novel restriction endonucleases from Campylobacter jejuni. Gene 157, 109-110.
-
(1995)
Gene
, vol.157
, pp. 109-110
-
-
Vitor, J.M.1
Morgan, R.D.2
-
56
-
-
0033550203
-
The HaeIV restriction modification system of Haemophilus aegyptius is encoded by a single polypeptide
-
Piekarowicz, A., Golaszewska, M., Sunday, A.O., Siwinska, M. & Stein, B.C. (1999) The HaeIV restriction modification system of Haemophilus aegyptius is encoded by a single polypeptide. J Mol. Biol. 293, 1055-1065.
-
(1999)
J Mol. Biol.
, vol.293
, pp. 1055-1065
-
-
Piekarowicz, A.1
Golaszewska, M.2
Sunday, A.O.3
Siwinska, M.4
Stein, B.C.5
-
57
-
-
0031959011
-
Does BcgI, a unique restriction endonuclease, require two recognition sites for cleavage?
-
Kong, H. & Smith, C.L. (1897) Does BcgI, a unique restriction endonuclease, require two recognition sites for cleavage? Biol. Chem. 379, 605-609.
-
(1897)
Biol. Chem.
, vol.379
, pp. 605-609
-
-
Kong, H.1
Smith, C.L.2
-
58
-
-
0034629080
-
Reactions of BglI and other type II restriction endonucleases with discontinuous recognition sites
-
Gormley, N.A., Bath, A.J. & Halford, S.E. (2000) Reactions of BglI and other type II restriction endonucleases with discontinuous recognition sites. J Biol. Chem. 275, 6928-6936.
-
(2000)
J Biol. Chem.
, vol.275
, pp. 6928-6936
-
-
Gormley, N.A.1
Bath, A.J.2
Halford, S.E.3
-
59
-
-
0029940857
-
Horizontal gene transfer contributes to the wide distribution and evolution of type II restriction-modification systems
-
Jeltsch, A. & Pingoud, A. (1996) Horizontal gene transfer contributes to the wide distribution and evolution of type II restriction-modification systems. J. Mol. Evol. 42, 91-96.
-
(1996)
J. Mol. Evol.
, vol.42
, pp. 91-96
-
-
Jeltsch, A.1
Pingoud, A.2
-
60
-
-
0030183768
-
Engineering novel restriction endonucleases: Principles and applications
-
Jeltsch, A., Wenz, C., Wende, W., Selent, U. & Pingoud, A. (1996) Engineering novel restriction endonucleases: Principles and applications. Trends Biotechnol. 14, 235-238.
-
(1996)
Trends Biotechnol.
, vol.14
, pp. 235-238
-
-
Jeltsch, A.1
Wenz, C.2
Wende, W.3
Selent, U.4
Pingoud, A.5
-
61
-
-
0032848682
-
Type II restriction endonucleases: Structural, functional and evolutionary relationships
-
Kovall, R.A. & Matthews, B.W. (1999) Type II restriction endonucleases: Structural, functional and evolutionary relationships. Curr. Opin. Chem. Biol. 3, 578-583.
-
(1999)
Curr. Opin. Chem. Biol.
, vol.3
, pp. 578-583
-
-
Kovall, R.A.1
Matthews, B.W.2
-
62
-
-
0028890128
-
In vivo restriction by LlaI is encoded by three genes, arranged in an operon with llaIM, on the conjugative Lactococcus plasmid pTR2030
-
O'Sullivan, D.J., Zagula, K. & Klaenhammer, T.R. (1995) In vivo restriction by LlaI is encoded by three genes, arranged in an operon with llaIM, on the conjugative Lactococcus plasmid pTR2030. J. Bacteriol. 177, 134-143.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 134-143
-
-
O'Sullivan, D.J.1
Zagula, K.2
Klaenhammer, T.R.3
-
63
-
-
0023645197
-
Proteins encoded by the DpnII restriction gene cassette. Two methylases and an endonuclease
-
de la Campa, A.G., Kale, P., Springhorn, S.S. & Lacks, S.A. (1987) Proteins encoded by the DpnII restriction gene cassette. Two methylases and an endonuclease. J. Mol. Biol. 196, 457-469.
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 457-469
-
-
De La Campa, A.G.1
Kale, P.2
Springhorn, S.S.3
Lacks, S.A.4
-
64
-
-
0031960283
-
A pair of single-strand and double-strand DNA cytosine-N4 methyltransferases from Bacillus centrosporus
-
Merkiene, E., Vilkaitis, G. & Klimasauskas, S. (1998) A pair of single-strand and double-strand DNA cytosine-N4 methyltransferases from Bacillus centrosporus. Biol. Chem. 379, 569-571.
-
(1998)
Biol. Chem.
, vol.379
, pp. 569-571
-
-
Merkiene, E.1
Vilkaitis, G.2
Klimasauskas, S.3
-
65
-
-
0014077176
-
Restriction of nonglucosylated T-even bacteriophage: Properties of permissive mutants of Escherichia coli B and K12
-
Revel, H.R. (1967) Restriction of nonglucosylated T-even bacteriophage: Properties of permissive mutants of Escherichia coli B and K12. Virology 31, 688-701.
-
(1967)
Virology
, vol.31
, pp. 688-701
-
-
Revel, H.R.1
-
66
-
-
0025035727
-
Genetic and sequence organization of the mcrBC locus of Escherichia coli K-12
-
Dila, D., Sutherland, E., Moran, L., Slatko, B. & Raleigh, E.A. (1990) Genetic and sequence organization of the mcrBC locus of Escherichia coli K-12. J. Bacteriol. 172, 4888-4900.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 4888-4900
-
-
Dila, D.1
Sutherland, E.2
Moran, L.3
Slatko, B.4
Raleigh, E.A.5
-
67
-
-
0026323401
-
Characterization and expression of the Escherichia coli Mrr restriction system
-
Waite-Rees, P.A., Keating, C.J., Moran, L.S., Slatko, B.E., Hornstra, L.J. & Benner, J.S. (1991) Characterization and expression of the Escherichia coli Mrr restriction system. J Bacteriol. 173, 5207-5219.
-
(1991)
J Bacteriol.
, vol.173
, pp. 5207-5219
-
-
Waite-Rees, P.A.1
Keating, C.J.2
Moran, L.S.3
Slatko, B.E.4
Hornstra, L.J.5
Benner, J.S.6
-
68
-
-
0017411721
-
Complementary specificity of restriction endonucleases of Diplococcus pneumoniae with respect to DNA methylation
-
Lacks, S. & Greenberg, B. (1977) Complementary specificity of restriction endonucleases of Diplococcus pneumoniae with respect to DNA methylation. J. Mol. Biol. 114, 153-168.
-
(1977)
J. Mol. Biol.
, vol.114
, pp. 153-168
-
-
Lacks, S.1
Greenberg, B.2
-
69
-
-
0028040618
-
Molecular cloning and expression of a novel hydroxymethylcytosine-specific restriction enzyme (PvuRts1I) modulated by glucosylation of DNA
-
Janosi, L., Yonemitsu, H., Hong, H. & Kaji, A. (1994) Molecular cloning and expression of a novel hydroxymethylcytosine-specific restriction enzyme (PvuRts1I) modulated by glucosylation of DNA. J. Mol. Biol. 242, 45-61.
-
(1994)
J. Mol. Biol.
, vol.242
, pp. 45-61
-
-
Janosi, L.1
Yonemitsu, H.2
Hong, H.3
Kaji, A.4
-
71
-
-
0033567272
-
Homing endonucleases: Structure, function and evolution
-
Jurica, M.S. & Stoddard, B.L. (1999) Homing endonucleases: Structure, function and evolution. Cell Mol. Life Sci. 55, 1304-1326.
-
(1999)
Cell Mol. Life Sci.
, vol.55
, pp. 1304-1326
-
-
Jurica, M.S.1
Stoddard, B.L.2
-
72
-
-
0034656221
-
Invasion of a multitude of genetic niches by mobile endonuclease genes
-
Gimble, F.S. (2000) Invasion of a multitude of genetic niches by mobile endonuclease genes. FEMS Microbiol. Lett. 185, 99-107.
-
(2000)
FEMS Microbiol. Lett.
, vol.185
, pp. 99-107
-
-
Gimble, F.S.1
-
73
-
-
0029616336
-
Mechanisms of intron mobility
-
Belfort, M. & Perlman, P.S. (1995) Mechanisms of intron mobility. J. Biol Chem. 270, 30237-30240.
-
(1995)
J. Biol Chem.
, vol.270
, pp. 30237-30240
-
-
Belfort, M.1
Perlman, P.S.2
-
74
-
-
0001231364
-
Methylation of DNA
-
Neidhardt, F.C., ed. ASM Press, Washington DC
-
Marinus, M.G. (1996) Methylation of DNA; in Escherichia coli and Salmonella typhimurium (Neidhardt, F.C., ed.) pp. 782-791, ASM Press, Washington DC.
-
(1996)
Escherichia Coli and Salmonella Typhimurium
, pp. 782-791
-
-
Marinus, M.G.1
-
75
-
-
0021972860
-
Viability of Escherichia coli K-12 DNA adenine methylase (dam) mutants requires increased expression of specific genes in the SOS regulon
-
Peterson, K.R., Wertman, K.F., Mount, D.W. & Marinus, M.G. (1985) Viability of Escherichia coli K-12 DNA adenine methylase (dam) mutants requires increased expression of specific genes in the SOS regulon. Mol. Gen. Genet. 201, 14-19.
-
(1985)
Mol. Gen. Genet.
, vol.201
, pp. 14-19
-
-
Peterson, K.R.1
Wertman, K.F.2
Mount, D.W.3
Marinus, M.G.4
-
76
-
-
0030931867
-
The CcrM DNA methyltransferase is widespread in the alpha subdivision of proteobacteria and its essential functions are conserved in Rhizobium meliloti and Caulobacter crescentus
-
Wright, R., Stephens, C. & Shapiro, L. (1997) The CcrM DNA methyltransferase is widespread in the alpha subdivision of proteobacteria and its essential functions are conserved in Rhizobium meliloti and Caulobacter crescentus. J. Bacteriol. 179, 5869-5877.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 5869-5877
-
-
Wright, R.1
Stephens, C.2
Shapiro, L.3
-
77
-
-
0027210659
-
Methylated cytosine at Dem (CCATGG) sites in Escherichia coli: Possible function and evolutionary implications
-
Gomez-Eichelmann, M.C. & Ramirez-Santos, J. (1993) Methylated cytosine at Dem (CCATGG) sites in Escherichia coli: Possible function and evolutionary implications. J. Mol. Evol. 37, 11-24.
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 11-24
-
-
Gomez-Eichelmann, M.C.1
Ramirez-Santos, J.2
-
78
-
-
0029925165
-
Very short patch repair: Reducing the cost of cytosine methylation
-
Lieb, M. & Bhagwat, A.S. (1996) Very short patch repair: Reducing the cost of cytosine methylation. Mol. Microbiol. 20, 467-473.
-
(1996)
Mol. Microbiol.
, vol.20
, pp. 467-473
-
-
Lieb, M.1
Bhagwat, A.S.2
-
79
-
-
0032473571
-
Structural basis for MutH activation in E. Coli mismatch repair and relationship of MutH to restriction endonucleases
-
Ban, C. & Yang, W. (1998) Structural basis for MutH activation in E. coli mismatch repair and relationship of MutH to restriction endonucleases. EMBO J. 17, 1526-1534.
-
(1998)
EMBO J.
, vol.17
, pp. 1526-1534
-
-
Ban, C.1
Yang, W.2
-
80
-
-
0033544707
-
Recognition of a TG mismatch: The crystal structure of very short patch repair endonuclease in complex with a DNA duplex
-
Tsutakawa, S.E., Jingami, H. & Morikawa, K. (1999) Recognition of a TG mismatch: The crystal structure of very short patch repair endonuclease in complex with a DNA duplex. Cell 99, 615-623.
-
(1999)
Cell
, vol.99
, pp. 615-623
-
-
Tsutakawa, S.E.1
Jingami, H.2
Morikawa, K.3
-
81
-
-
0023322333
-
Organization of multispecific DNA methyltransferases encoded by temperate Bacillus subtilis phages
-
Behrens, B., Noyer-Weidner, M., Pawlek, B., Lauster, R., Balganesh, T.S. & Trautner, T.A. (1987) Organization of multispecific DNA methyltransferases encoded by temperate Bacillus subtilis phages. EMBO J. 6, 1137-1142.
-
(1987)
EMBO J.
, vol.6
, pp. 1137-1142
-
-
Behrens, B.1
Noyer-Weidner, M.2
Pawlek, B.3
Lauster, R.4
Balganesh, T.S.5
Trautner, T.A.6
-
82
-
-
0022485667
-
DNA methyltransferase genes of Bacillus subtilis phages: Comparison of their nucleotide sequences
-
Tran-Betcke, A., Behrens, B., Noyer-Weidner, M. & Trautner, T.A. (1986) DNA methyltransferase genes of Bacillus subtilis phages: Comparison of their nucleotide sequences. Gene 42, 89-96.
-
(1986)
Gene
, vol.42
, pp. 89-96
-
-
Tran-Betcke, A.1
Behrens, B.2
Noyer-Weidner, M.3
Trautner, T.A.4
-
83
-
-
0022919465
-
Two DNA recognition domains of the specificity polypeptides of a family of type I restriction enzymes
-
Fuller-Pace, F.V. & Murray, N.E. (1986) Two DNA recognition domains of the specificity polypeptides of a family of type I restriction enzymes. Proc. Natl. Acad. Sci. U.S.A. 83, 9368-9372.
-
(1986)
Proc. Natl. Acad. Sci. U.S.A.
, vol.83
, pp. 9368-9372
-
-
Fuller-Pace, F.V.1
Murray, N.E.2
-
84
-
-
0024062567
-
Sequential order of target-recognizing domains in multispecific DNA-methyltransferases
-
Wilke, K., Rauhut, E., Noyer-Weidner, M., Lauster, R., Pawlek, B., Behrens, B. & Trautner, T.A. (1988) Sequential order of target-recognizing domains in multispecific DNA-methyltransferases. EMBO J. 7, 2601-2609.
-
(1988)
EMBO J.
, vol.7
, pp. 2601-2609
-
-
Wilke, K.1
Rauhut, E.2
Noyer-Weidner, M.3
Lauster, R.4
Pawlek, B.5
Behrens, B.6
Trautner, T.A.7
-
85
-
-
0026425444
-
'Pseudo' domains in phage-encoded DNA methyltransferases
-
Lange, C., Jugel, A., Walter, J., Noyer-Weidner, M. & Trautner, T.A. (1991) 'Pseudo' domains in phage-encoded DNA methyltransferases. Nature 352, 645-648.
-
(1991)
Nature
, vol.352
, pp. 645-648
-
-
Lange, C.1
Jugel, A.2
Walter, J.3
Noyer-Weidner, M.4
Trautner, T.A.5
-
86
-
-
0030002809
-
Identification of a subdomain within DNA-(cytosine-C5)-methyltransferases responsible for the recognition of the 5′ part of their DNA target
-
Lange, C., Wild, C. & Trautner, T.A. (1996) Identification of a subdomain within DNA-(cytosine-C5)-methyltransferases responsible for the recognition of the 5′ part of their DNA target. EMBO J. 15, 1443-1450.
-
(1996)
EMBO J.
, vol.15
, pp. 1443-1450
-
-
Lange, C.1
Wild, C.2
Trautner, T.A.3
-
87
-
-
0029913711
-
Exact size and organization of DNA target-recognizing domains of multispecific DNA-(cytosine-C5)-methyltransferases
-
Trautner, T.A., Pawlek, B., Behrens, B. & Willert, J. (1996) Exact size and organization of DNA target-recognizing domains of multispecific DNA-(cytosine-C5)-methyltransferases. EMBO J. 15, 1434-1442.
-
(1996)
EMBO J.
, vol.15
, pp. 1434-1442
-
-
Trautner, T.A.1
Pawlek, B.2
Behrens, B.3
Willert, J.4
-
88
-
-
0026757713
-
How M.MspI and M.HpaII decide which base to methylate
-
Mi, S. & Roberts, R. J. (1992) How M.MspI and M.HpaII decide which base to methylate. Nucleic Acids Res. 20, 4811-4816.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 4811-4816
-
-
Mi, S.1
Roberts, R.J.2
-
89
-
-
0034595209
-
Hybrid mouse-prokaryotic DNA (cytosine-5) methyltransferases retain the specificity of the parental C-terminal domain
-
Pradhan, S. & Roberts, R.J. (2000) Hybrid mouse-prokaryotic DNA (cytosine-5) methyltransferases retain the specificity of the parental C-terminal domain. EMBO J. 19, 2103-2114.
-
(2000)
EMBO J.
, vol.19
, pp. 2103-2114
-
-
Pradhan, S.1
Roberts, R.J.2
-
90
-
-
0033036197
-
Molecular phylogenetics of DNA 5mC-methyltransferases
-
Bujnicki, J.M. & Radlinska, M. (1999) Molecular phylogenetics of DNA 5mC-methyltransferases. Acta Microbiol. Pol. 48, 19-33.
-
(1999)
Acta Microbiol. Pol.
, vol.48
, pp. 19-33
-
-
Bujnicki, J.M.1
Radlinska, M.2
-
91
-
-
0023373869
-
Reassortment of DNA recognition domains and the evolution of new specificities
-
Gann, A.A., Campbell, A.J., Collins, J.F., Coulson, A.F. & Murray, N.B. (1987) Reassortment of DNA recognition domains and the evolution of new specificities. Mol. Microbiol. 1, 13-22.
-
(1987)
Mol. Microbiol.
, vol.1
, pp. 13-22
-
-
Gann, A.A.1
Campbell, A.J.2
Collins, J.F.3
Coulson, A.F.4
Murray, N.B.5
-
92
-
-
0028099459
-
A symmetrical model for the domain structure of type I DNA methyltransferases
-
Kneale, G.G. (1994) A symmetrical model for the domain structure of type I DNA methyltransferases. J. Mol. Biol. 243, 1-5.
-
(1994)
J. Mol. Biol.
, vol.243
, pp. 1-5
-
-
Kneale, G.G.1
-
93
-
-
0029790428
-
Generation of new DNA binding specificity by truncation of the type IC EcoDXXI hsdS gene
-
MacWilliams, M.P. & Bickle, T.A. (1996) Generation of new DNA binding specificity by truncation of the type IC EcoDXXI hsdS gene. EMBO J. 15, 4775-4783.
-
(1996)
EMBO J.
, vol.15
, pp. 4775-4783
-
-
Macwilliams, M.P.1
Bickle, T.A.2
-
94
-
-
0030612718
-
The specificity of StySKI, a type I restriction enzyme, implies a structure with rotational symmetry
-
Thorpe, P.M., Ternent, D. & Murray, N.B. (1997) The specificity of StySKI, a type I restriction enzyme, implies a structure with rotational symmetry. Nucleic Acids Res. 25, 1694-1700.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 1694-1700
-
-
Thorpe, P.M.1
Ternent, D.2
Murray, N.B.3
-
95
-
-
0032506027
-
A family of phase-variable restriction enzymes with differing specificities generated by high-frequency gene rearrangements
-
Dybvig, K., Sitaraman, R. & French, C.T. (1998) A family of phase-variable restriction enzymes with differing specificities generated by high-frequency gene rearrangements. Proc. Natl. Acad. Sci. U.S.A. 95, 13923-13928.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 13923-13928
-
-
Dybvig, K.1
Sitaraman, R.2
French, C.T.3
-
96
-
-
0031899523
-
Combinational variation of restriction modification specificities in Lactococcus lactis
-
Schouler, C., Gautier, M., Ehrlich, S.D. & Chopin, M.C. (1998) Combinational variation of restriction modification specificities in Lactococcus lactis. Mol. Microbiol. 28, 169-178.
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 169-178
-
-
Schouler, C.1
Gautier, M.2
Ehrlich, S.D.3
Chopin, M.C.4
-
97
-
-
0028841409
-
Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyltransferases and suggests a catalytic mechanism for these enzymes
-
Malone, T., Blumenthal, R.M. & Cheng, X. (1995) Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyltransferases and suggests a catalytic mechanism for these enzymes. J. Mol. Biol. 253, 618-632.
-
(1995)
J. Mol. Biol.
, vol.253
, pp. 618-632
-
-
Malone, T.1
Blumenthal, R.M.2
Cheng, X.3
-
98
-
-
0027338134
-
Crystal structure of the HhaI DNA methyltransferase complexed with S-adenosyl-L-methionine
-
Cheng, X., Kumar, S., Posfai, J., Pflugrath, J.W. & Roberts, R.J. (1993) Crystal structure of the HhaI DNA methyltransferase complexed with S-adenosyl-L-methionine. Cell 74, 299-307.
-
(1993)
Cell
, vol.74
, pp. 299-307
-
-
Cheng, X.1
Kumar, S.2
Posfai, J.3
Pflugrath, J.W.4
Roberts, R.J.5
-
99
-
-
0029068629
-
The crystal structure of HaeIII methyltransferase convalently complexed to DNA: An extrahelical cytosine and rearranged base pairing
-
Reinisch, K.M., Chen, L., Verdine, G.L. & Lipscomb, W.N. (1995) The crystal structure of HaeIII methyltransferase convalently complexed to DNA: An extrahelical cytosine and rearranged base pairing. Cell 82, 143-153.
-
(1995)
Cell
, vol.82
, pp. 143-153
-
-
Reinisch, K.M.1
Chen, L.2
Verdine, G.L.3
Lipscomb, W.N.4
-
100
-
-
0027946731
-
Three-dimensional structure of the adenine-specific DNA methyltransferase M.TaqI in complex with the cofactor S-adenosylmethionine
-
Labahn, J., Granzin, J., Schluckebier, G., Robinson, D.P., Jack, W.E., Schildkraut, I. & Saenger, W. (1994) Three-dimensional structure of the adenine-specific DNA methyltransferase M.TaqI in complex with the cofactor S-adenosylmethionine. Proc. Natl. Acad. Sci. U.S.A. 91, 10957-10961.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 10957-10961
-
-
Labahn, J.1
Granzin, J.2
Schluckebier, G.3
Robinson, D.P.4
Jack, W.E.5
Schildkraut, I.6
Saenger, W.7
-
101
-
-
0032535109
-
Crystal structure of the DpnM DNA adenine methyltransferase from the DpnII restriction system of Streptococcus pneumoniae bound to S-adenosylmethionine
-
Tran, P.H., Korszun, Z.R., Cerritelli, S., Springhorn, S.S. & Lacks, S.A. (1998) Crystal structure of the DpnM DNA adenine methyltransferase from the DpnII restriction system of Streptococcus pneumoniae bound to S-adenosylmethionine. Structure 6, 1563-1575.
-
(1998)
Structure
, vol.6
, pp. 1563-1575
-
-
Tran, P.H.1
Korszun, Z.R.2
Cerritelli, S.3
Springhorn, S.S.4
Lacks, S.A.5
-
102
-
-
0034666836
-
Structure of RsrI methyltransferase, a member of the N6-adenine beta class of DNA methyltransferases
-
Scavetta, R.D., Thomas, C.B., Walsh, M.A., Szegedi, S., Joachimiak, A., Gumport, R.I. & Churchill, M.E. (2000) Structure of RsrI methyltransferase, a member of the N6-adenine beta class of DNA methyltransferases. Nucleic Acids Res. 28, 3950-3961.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 3950-3961
-
-
Scavetta, R.D.1
Thomas, C.B.2
Walsh, M.A.3
Szegedi, S.4
Joachimiak, A.5
Gumport, R.I.6
Churchill, M.E.7
-
103
-
-
0029353607
-
Structural modelling of a type I DNA methyltransferase
-
Dryden, D.T., Sturrock, S.S. & Winter, M. (1995) Structural modelling of a type I DNA methyltransferase. Nat. Struct. Biol. 2, 632-635.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 632-635
-
-
Dryden, D.T.1
Sturrock, S.S.2
Winter, M.3
-
104
-
-
0032403154
-
Localization of a protein-DNA interface by random mutagenesis
-
O'Neill, M., Dryden, D.T. & Murray, N.E. (1998) Localization of a protein-DNA interface by random mutagenesis. EMBO J. 17, 7118-7127.
-
(1998)
EMBO J.
, vol.17
, pp. 7118-7127
-
-
O'Neill, M.1
Dryden, D.T.2
Murray, N.E.3
-
105
-
-
0033571544
-
Molecular evolution of DNA-(cytosine-N4) methyltransferases: Evidence for their polyphyletic origin
-
Bujnicki, J.M. & Radlinska, M. (1999) Molecular evolution of DNA-(cytosine-N4) methyltransferases: Evidence for their polyphyletic origin. Nucleic Acids Res. 27, 4501-4509.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4501-4509
-
-
Bujnicki, J.M.1
Radlinska, M.2
-
106
-
-
0032705750
-
Structural characterization of two tandemly arranged DNA methyltransferase genes from Neisseria gonorrhoeae MS11: N4-cytosine specific M.NgoMXV and nonfunctional 5-cytosine-type M.NgoMorf2P
-
Radlinska, M., Bujnicki, J.M. & Piekarowicz, A. (1999) Structural characterization of two tandemly arranged DNA methyltransferase genes from Neisseria gonorrhoeae MS11: N4-cytosine specific M.NgoMXV and nonfunctional 5-cytosine-type M.NgoMorf2P. Proteins 37, 717-728.
-
(1999)
Proteins
, vol.37
, pp. 717-728
-
-
Radlinska, M.1
Bujnicki, J.M.2
Piekarowicz, A.3
-
107
-
-
0034856726
-
Cloning of enterohemorrhagic Escherichia coli phage VT-2 Dam methyltransferase
-
Radlinska, M. & Bujnicki, J.M. (2001) Cloning of enterohemorrhagic Escherichia coli phage VT-2 Dam methyltransferase. Acta Microbiol. Pol. 50, 151-156.
-
(2001)
Acta Microbiol. Pol.
, vol.50
, pp. 151-156
-
-
Radlinska, M.1
Bujnicki, J.M.2
-
109
-
-
0028010888
-
HhaI methyltransferase flips its target base out of the DNA helix
-
Klimasauskas, S., Kumar, S., Roberts, R.J. & Cheng, X. (1994) HhaI methyltransferase flips its target base out of the DNA helix. Cell 76, 357-369.
-
(1994)
Cell
, vol.76
, pp. 357-369
-
-
Klimasauskas, S.1
Kumar, S.2
Roberts, R.J.3
Cheng, X.4
-
110
-
-
0034746572
-
Structure of the N6-adenine DNA methyltransferase M.TaqI in complex with DNA and a cofactor analog
-
Goedecke, K., Pignot, M., Goody, R.S., Scheidig, A.J. & Weinhold, E. (2001) Structure of the N6-adenine DNA methyltransferase M.TaqI in complex with DNA and a cofactor analog. Nat. Struct. Biol. 8, 121-125.
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 121-125
-
-
Goedecke, K.1
Pignot, M.2
Goody, R.S.3
Scheidig, A.J.4
Weinhold, E.5
-
111
-
-
0030790696
-
Structure of the multimodular endonuclease FokI bound to DNA
-
Wah, D.A., Hirsch, J.A., Dorner, L.F., Schildkraut, I. & Aggarwal, A.K. (1997) Structure of the multimodular endonuclease FokI bound to DNA. Nature 388, 97-100.
-
(1997)
Nature
, vol.388
, pp. 97-100
-
-
Wah, D.A.1
Hirsch, J.A.2
Dorner, L.F.3
Schildkraut, I.4
Aggarwal, A.K.5
-
112
-
-
0032169674
-
Structure of FokI has implications for DNA cleavage
-
Wah, D.A., Bitinaite, J., Schildkraut, I. & Aggarwal, A.K. (1998) Structure of FokI has implications for DNA cleavage. Proc. Natl. Acad. Sci U.S.A. 95, 10564-10569.
-
(1998)
Proc. Natl. Acad. Sci U.S.A.
, vol.95
, pp. 10564-10569
-
-
Wah, D.A.1
Bitinaite, J.2
Schildkraut, I.3
Aggarwal, A.K.4
-
113
-
-
0034613269
-
Novel subtype of type Us restriction enzymes
-
Sapranauskas, R., Sasnauskas, G., Lagunavicius, A., Vilkaitis, G., Lubys, A. & Siksnys, V. (2000) Novel subtype of type Us restriction enzymes. J Biol. Chem. 275, 30878-30885.
-
(2000)
J Biol. Chem.
, vol.275
, pp. 30878-30885
-
-
Sapranauskas, R.1
Sasnauskas, G.2
Lagunavicius, A.3
Vilkaitis, G.4
Lubys, A.5
Siksnys, V.6
-
114
-
-
0035150384
-
Polyphyletic evolution of type II restriction enzymes revisited: Two independent sources of second-hand folds revealed
-
Bujnicki, J.M., Radlinska, M. & Rychlewski, L. (2001) Polyphyletic evolution of type II restriction enzymes revisited: Two independent sources of second-hand folds revealed. Trends Biochem. Sci. 26, 9-11.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 9-11
-
-
Bujnicki, J.M.1
Radlinska, M.2
Rychlewski, L.3
-
115
-
-
0033562780
-
Configuration of the catalytic GIY-YIG domain of intron endonuclease I-TevI: Coincidence of computational and molecular findings
-
Kowalski, J.C., Belfort, M., Stapleton, M.A., Holpert, M., Dansereau, J.T., Pietrokovski, S., Baxter, S.M. & Derbyshire, V. (1999) Configuration of the catalytic GIY-YIG domain of intron endonuclease I-TevI: Coincidence of computational and molecular findings. Nucleic Acids Res. 27, 2115-2125.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2115-2125
-
-
Kowalski, J.C.1
Belfort, M.2
Stapleton, M.A.3
Holpert, M.4
Dansereau, J.T.5
Pietrokovski, S.6
Baxter, S.M.7
Derbyshire, V.8
-
116
-
-
0006279468
-
The black sheep of the family: AdoMet-dependent methyltransferases that do not fit the consensus structural fold
-
Cheng, X., et al., eds. World Scientific Inc., Singapore
-
Dixon, M., Fauman, E.B. & Ludwig, M.L. (1999) The black sheep of the family: AdoMet-dependent methyltransferases that do not fit the consensus structural fold; in: S-Adenosylmethionine-dependent Methyltransferases: Structures and Functions (Cheng, X., et al., eds.) pp. 39-54, World Scientific Inc., Singapore.
-
(1999)
S-Adenosylmethionine-dependent Methyltransferases: Structures and Functions
, pp. 39-54
-
-
Dixon, M.1
Fauman, E.B.2
Ludwig, M.L.3
-
117
-
-
0033105429
-
Crystal structure of deoxycytidylate hydroxymethylase from bacteriophage T4, a component of the deoxyribonucleoside triphosphate-synthesizing complex
-
Song, H.K., Sohn, S.H. & Suh, S.W. (1999) Crystal structure of deoxycytidylate hydroxymethylase from bacteriophage T4, a component of the deoxyribonucleoside triphosphate-synthesizing complex. EMBO J. 18, 1104-1113.
-
(1999)
EMBO J.
, vol.18
, pp. 1104-1113
-
-
Song, H.K.1
Sohn, S.H.2
Suh, S.W.3
-
118
-
-
0033302662
-
Comparison of protein structures reveals monophyletic origin of the AdoMet-dependent methyltransferase family and mechanistic convergence rather than recent differentiation of N4-cytosine and N6-adenine DNA methylation
-
Bujnicki, J.M. (1999) Comparison of protein structures reveals monophyletic origin of the AdoMet-dependent methyltransferase family and mechanistic convergence rather than recent differentiation of N4-cytosine and N6-adenine DNA methylation. In Silico Biol. 1, 1-8, http://www.bioinfo.de/isb/1999-01/0016/.
-
(1999)
In Silico Biol.
, vol.1
, pp. 1-8
-
-
Bujnicki, J.M.1
-
119
-
-
0024542208
-
Evolution of type II DNA methyltransferases. A gene duplication model
-
Lauster, R. (1989) Evolution of type II DNA methyltransferases. A gene duplication model. J. Mol. Biol. 206, 313-321.
-
(1989)
J. Mol. Biol.
, vol.206
, pp. 313-321
-
-
Lauster, R.1
-
120
-
-
0033538456
-
On the substrate specificity of DNA methyltransferases. Adenine-N6 DNA methyltransferases also modify cytosine residues at position N4
-
Jeltsch, A., Christ, F., Fatemi, M. & Roth, M. (1999) On the substrate specificity of DNA methyltransferases. Adenine-N6 DNA methyltransferases also modify cytosine residues at position N4. J. Biol. Chem. 274, 19538-19544.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 19538-19544
-
-
Jeltsch, A.1
Christ, F.2
Fatemi, M.3
Roth, M.4
-
121
-
-
0034743948
-
The cytosine N4-methyltransferase M.PvuII also modifies adenine residues
-
Jeltsch, A. (2001) The cytosine N4-methyltransferase M.PvuII also modifies adenine residues. J. Biol. Chem. 382, 707-710.
-
(2001)
J. Biol. Chem.
, vol.382
, pp. 707-710
-
-
Jeltsch, A.1
-
122
-
-
0035312284
-
DNA methyltransferases of the Cyanobacterium Anabaena PCC7120
-
Matveyev, A.V., Young, K.T., Meng, A. & Elhai, J. (2001) DNA methyltransferases of the Cyanobacterium Anabaena PCC7120. Nucleic Acids Res. 29, 1491-1506.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1491-1506
-
-
Matveyev, A.V.1
Young, K.T.2
Meng, A.3
Elhai, J.4
-
123
-
-
0035419349
-
Changing the target base specificity of the EcoRV DNA methyltransferase by rational de novo protein-design
-
Roth, M. & Jeltsch, A. (2001) Changing the target base specificity of the EcoRV DNA methyltransferase by rational de novo protein-design. Nucleic Acids Res. 29, 1-8.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1-8
-
-
Roth, M.1
Jeltsch, A.2
-
124
-
-
0024604147
-
Predictive motifs derived from cytosine methyltransferases
-
Posfai, J., Bhagwat, A.S., Posfai, G. & Roberts, R.J. (1989) Predictive motifs derived from cytosine methyltransferases. Nucleic Acids Res. 17, 2421-2435.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 2421-2435
-
-
Posfai, J.1
Bhagwat, A.S.2
Posfai, G.3
Roberts, R.J.4
-
125
-
-
0024841942
-
Sequence motifs characteristic of DNA[cytosine-N4]methyltransferases: Similarity to adenine and cytosine-C5 DNA-methylases
-
Klimasauskas, S., Timinskas, A., Menkevicius, S., Butkiene, D., Butkus, V. & Janulaitis, A. (1989) Sequence motifs characteristic of DNA[cytosine-N4]methyltransferases: Similarity to adenine and cytosine-C5 DNA-methylases. Nucleic Acids Res. 17, 9823-9832.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 9823-9832
-
-
Klimasauskas, S.1
Timinskas, A.2
Menkevicius, S.3
Butkiene, D.4
Butkus, V.5
Janulaitis, A.6
-
126
-
-
0028226225
-
The DNA (cytosine-5) methyltransferases
-
Kumar, S., Cheng, X., Klimasauskas, S., Mi, S., Posfai, J., Roberts, R.J. & Wilson, G.G. (1994) The DNA (cytosine-5) methyltransferases. Nucleic Acids Res. 22, 1-10.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 1-10
-
-
Kumar, S.1
Cheng, X.2
Klimasauskas, S.3
Mi, S.4
Posfai, J.5
Roberts, R.J.6
Wilson, G.G.7
-
127
-
-
0034845807
-
Cloning and characterization of M.LmoA118I, a novel DNA:M4C methyltransferase from the Listeria monocytogenes phage A118, a close homolog of M.NgoMXV
-
Bujnicki, J.M. & Radlinska, M. (2001) Cloning and characterization of M.LmoA118I, a novel DNA:m4C methyltransferase from the Listeria monocytogenes phage A118, a close homolog of M.NgoMXV. Acta Microbiol Pol. 50, 151-156.
-
(2001)
Acta Microbiol Pol.
, vol.50
, pp. 151-156
-
-
Bujnicki, J.M.1
Radlinska, M.2
-
128
-
-
0032828582
-
Cloning of the Dam methyltransferase gene from Haemophilus influenzae bacteriophage HP1
-
Piekarowicz, A. & Bujnicki, J.M. (1999) Cloning of the Dam methyltransferase gene from Haemophilus influenzae bacteriophage HP1. Acta Microbiol. Pol 48, 123-129.
-
(1999)
Acta Microbiol. Pol
, vol.48
, pp. 123-129
-
-
Piekarowicz, A.1
Bujnicki, J.M.2
-
129
-
-
0032730192
-
Is the HemK family of putative S-adenosylmethio-nine-dependent methyltransferases a "missing" zeta subfamily of adenine methyltransferases? A hypothesis
-
Bujnicki, J.M. & Radlinska, M. (1999) Is the HemK family of putative S-adenosylmethio-nine-dependent methyltransferases a "missing" zeta subfamily of adenine methyltransferases? A hypothesis. IUBMB Life 48, 247-250.
-
(1999)
IUBMB Life
, vol.48
, pp. 247-250
-
-
Bujnicki, J.M.1
Radlinska, M.2
-
130
-
-
0033729437
-
Phylogenomic analysis of 16S rRNA:(guanine-N2) methyltransferases suggests new family members and reveals highly conserved motifs and a domain structure similar to other nucleic acid amino-methyltransferases
-
Bujnicki, J.M. (2000) Phylogenomic analysis of 16S rRNA:(guanine-N2) methyltransferases suggests new family members and reveals highly conserved motifs and a domain structure similar to other nucleic acid amino-methyltransferases. FASEB J. 14, 2365-2368.
-
(2000)
FASEB J.
, vol.14
, pp. 2365-2368
-
-
Bujnicki, J.M.1
-
131
-
-
0040824439
-
Divergence and retroconvergence in the evolution of sequence specificity and reaction mechanism of DNA methyltransferases and their relatives
-
Anonymous Bangalore, India
-
Bujnicki, J.M. & Rychlewski, L. (2000) Divergence and retroconvergence in the evolution of sequence specificity and reaction mechanism of DNA methyltransferases and their relatives; in: Proceedings of the IUBMB Symposium "DNA Enzymes: Structures and Mechanisms", Anonymous pp. 61, Bangalore, India.
-
(2000)
Proceedings of the IUBMB Symposium "DNA Enzymes: Structures and Mechanisms"
, pp. 61
-
-
Bujnicki, J.M.1
Rychlewski, L.2
-
132
-
-
0030816214
-
Cloning of the BssHII restriction-modification system in Escherichia coli: BssHII methyltransferase contains circularly permuted cytosine-5 methyltransferase motifs
-
Xu, S.Y., Xiao, J.P., Posfai, J., Maunus, R.E. & Benner, J.S. (1997) Cloning of the BssHII restriction-modification system in Escherichia coli: BssHII methyltransferase contains circularly permuted cytosine-5 methyltransferase motifs. Nucleic Acids Res. 25, 3991-3994.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3991-3994
-
-
Xu, S.Y.1
Xiao, J.P.2
Posfai, J.3
Maunus, R.E.4
Benner, J.S.5
-
133
-
-
0034712867
-
Conserved plant genes with similarity to mammalian de novo DNA methyltransferases
-
Cao, X., Springer, N.M., Muszynski, M.G., Phillips, R.L., Kaeppler, S. & Jacobsen, S.E. (2000) Conserved plant genes with similarity to mammalian de novo DNA methyltransferases. Proc. Natl. Acad. Sci. U.S.A. 97, 4979-4984.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 4979-4984
-
-
Cao, X.1
Springer, N.M.2
Muszynski, M.G.3
Phillips, R.L.4
Kaeppler, S.5
Jacobsen, S.E.6
-
134
-
-
0034643929
-
Homology modelling of the DNA 5mC methyltransferase M.BssHII. Is permutation of functional subdomains common to all subfamilies of DNA methyltransferases?
-
Bujnicki, J.M. (2000) Homology modelling of the DNA 5mC methyltransferase M.BssHII. is permutation of functional subdomains common to all subfamilies of DNA methyltransferases? Int. J. Biol. Macromol. 27, 195-204.
-
(2000)
Int. J. Biol. Macromol.
, vol.27
, pp. 195-204
-
-
Bujnicki, J.M.1
-
135
-
-
0033013317
-
Circular permutations in the molecular evolution of DNA methyltransferases
-
Jeltsch, A. (1999) Circular permutations in the molecular evolution of DNA methyltransferases. J. Mol. Evol. 49, 161-164.
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 161-164
-
-
Jeltsch, A.1
-
136
-
-
0029422261
-
Circular permutation of polypeptide chains: Implications for protein folding and stability
-
Heinemann, U. & Hahn, M. (1995) Circular permutation of polypeptide chains: Implications for protein folding and stability. Prog. Biophys. Mol. Biol. 64, 121-143.
-
(1995)
Prog. Biophys. Mol. Biol.
, vol.64
, pp. 121-143
-
-
Heinemann, U.1
Hahn, M.2
-
137
-
-
0030989408
-
Three-dimensional domain duplication, swapping and stealing
-
Heringa, J. & Taylor, W.R. (1997) Three-dimensional domain duplication, swapping and stealing. Curr. Opin. Struct. Biol. 7, 416-421.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 416-421
-
-
Heringa, J.1
Taylor, W.R.2
-
138
-
-
0027422635
-
On the origins, structures and functions of restriction-modification enzymes
-
Heitman, J. (1993) On the origins, structures and functions of restriction-modification enzymes. Genet. Eng. N.Y. 15, 57-108.
-
(1993)
Genet. Eng. N.Y.
, vol.15
, pp. 57-108
-
-
Heitman, J.1
-
139
-
-
0028998049
-
Evidence for an evolutionary relationship among type-II restriction endonucleases
-
Jeltsch, A., Kroger, M. & Pingoud, A. (1995) Evidence for an evolutionary relationship among type-II restriction endonucleases. Gene 160, 7-16.
-
(1995)
Gene
, vol.160
, pp. 7-16
-
-
Jeltsch, A.1
Kroger, M.2
Pingoud, A.3
-
140
-
-
0033933471
-
Phylogeny of the restriction endonuclease-like superfamily inferred from comparison of protein structures
-
Bujnicki, J.M. (2000) Phylogeny of the restriction endonuclease-like superfamily inferred from comparison of protein structures. J. Mol. Evol. 50, 39-44.
-
(2000)
J. Mol. Evol.
, vol.50
, pp. 39-44
-
-
Bujnicki, J.M.1
-
141
-
-
0032493296
-
Structural, functional and evolutionary relationships between lambda-exonuclease and the type II restriction endonucleases
-
Kovall, R.A. & Matthews, B.W. (1998) Structural, functional and evolutionary relationships between lambda-exonuclease and the type II restriction endonucleases. Proc. Natl. Acad. Sci. U.S.A. 95, 7893-7897.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 7893-7897
-
-
Kovall, R.A.1
Matthews, B.W.2
-
142
-
-
0035826842
-
Structure of Hjc, a Holliday junction resolvase, from Sulfolobus solfataricus
-
Bond, C.S., Kvaratskhelia, M., Richard, D., White, M.F. & Hunter, W.N. (2001) Structure of Hjc, a Holliday junction resolvase, from Sulfolobus solfataricus. Proc. Natl. Acad. Sci U.S.A. 98, 5509-5514.
-
(2001)
Proc. Natl. Acad. Sci U.S.A.
, vol.98
, pp. 5509-5514
-
-
Bond, C.S.1
Kvaratskhelia, M.2
Richard, D.3
White, M.F.4
Hunter, W.N.5
-
143
-
-
0035081705
-
Crystal structure of the Archaeal Holliday junction resolvase Hjc and implications for DNA recognition
-
Nishino, T., Komori, K., Tsuchiya, D., Ishino, Y. & Morikawa, K. (2001) Crystal structure of the Archaeal Holliday junction resolvase Hjc and implications for DNA recognition. Structure 9, 197-204.
-
(2001)
Structure
, vol.9
, pp. 197-204
-
-
Nishino, T.1
Komori, K.2
Tsuchiya, D.3
Ishino, Y.4
Morikawa, K.5
-
144
-
-
0035173848
-
Crystal structure of the Holliday junction resolving enzyme T7 endonuclease I
-
Hadden, J.M., Convery, M.A., Declais, A.C., Lilley, D.M. & Phillips, S.E. (2001) Crystal structure of the Holliday junction resolving enzyme T7 endonuclease I. Nat. Struct. Biol. 8, 62-67.
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 62-67
-
-
Hadden, J.M.1
Convery, M.A.2
Declais, A.C.3
Lilley, D.M.4
Phillips, S.E.5
-
145
-
-
0033634859
-
Unexpected structural diversity in DNA recombination: The restriction endonuclease connection
-
Hickman, A.B., Li, Y., Mathew, S.V., May, E.W., Craig, N.L. & Dyda, F. (2000) Unexpected structural diversity in DNA recombination: The restriction endonuclease connection. Mol. Cell. 5, 1025-1034.
-
(2000)
Mol. Cell.
, vol.5
, pp. 1025-1034
-
-
Hickman, A.B.1
Li, Y.2
Mathew, S.V.3
May, E.W.4
Craig, N.L.5
Dyda, F.6
-
146
-
-
0033105094
-
Conserved domains in DNA repair proteins and evolution of repair systems
-
Aravind, L., Walker, D.R. & Koonin, E.V. (1999) Conserved domains in DNA repair proteins and evolution of repair systems. Nucleic Acids Res. 27, 1223-1242.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1223-1242
-
-
Aravind, L.1
Walker, D.R.2
Koonin, E.V.3
-
147
-
-
0034664813
-
Holliday junction resolvases and related nucleases: Identification of new families, phyletic distribution and evolutionary trajectories
-
Aravind, L., Makarova, K.S. & Koonin, E.V. (2000) Holliday junction resolvases and related nucleases: Identification of new families, phyletic distribution and evolutionary trajectories. Nucleic Acids Res. 28, 3417-3432.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 3417-3432
-
-
Aravind, L.1
Makarova, K.S.2
Koonin, E.V.3
-
148
-
-
0034682793
-
A conserved nuclease domain in the Archaeal Holliday junction resolving enzyme Hjc
-
Kvaratskhelia, M., Wardleworth, B.N., Norman, D.G. & White, M.F. (2000) A conserved nuclease domain in the Archaeal Holliday junction resolving enzyme Hjc. J. Biol. Chem. 275, 25540-25546.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 25540-25546
-
-
Kvaratskhelia, M.1
Wardleworth, B.N.2
Norman, D.G.3
White, M.F.4
-
149
-
-
0035151431
-
Grouping together highly diverged PD-(D/ E)XK nucleases and identification of novel superfamily members using structure-guided alignment of sequence profiles
-
Bujnicki, J.M. & Rychlewski, L. (2001) Grouping together highly diverged PD-(D/ E)XK nucleases and identification of novel superfamily members using structure-guided alignment of sequence profiles. J. Mol. Microbiol. Biotechnol. 3, 69-72.
-
(2001)
J. Mol. Microbiol. Biotechnol.
, vol.3
, pp. 69-72
-
-
Bujnicki, J.M.1
Rychlewski, L.2
-
150
-
-
0035906281
-
Identification of a PD-(D/E)XK-like domain with a novel configuration of the endonuclease active site in the methyl-directed restriction enzyme Mrr and its homologs
-
Bujnicki, J.M. & Rychlewski, L. (2001) Identification of a PD-(D/E)XK-like domain with a novel configuration of the endonuclease active site in the methyl-directed restriction enzyme Mrr and its homologs. Gene 267, 183-191.
-
(2001)
Gene
, vol.267
, pp. 183-191
-
-
Bujnicki, J.M.1
Rychlewski, L.2
-
151
-
-
0035074910
-
The herpesvirus alkaline exonuclease belongs to the restriction endonuclease PD-(D/E)XK superfamily: Insight from molecular modeling and phylogenetic analysis
-
Bujnicki, J.M. & Rychlewski, L. (2001) The herpesvirus alkaline exonuclease belongs to the restriction endonuclease PD-(D/E)XK superfamily: Insight from molecular modeling and phylogenetic analysis. Virus Genes 22, 219-230.
-
(2001)
Virus Genes
, vol.22
, pp. 219-230
-
-
Bujnicki, J.M.1
Rychlewski, L.2
-
152
-
-
0035107309
-
Unusual evolutionary history of the tRNA splicing endonuclease EndA: Relationship to the LAGLIDADG and PD-(D/E)XK deoxyribonucleases
-
Bujnicki, J.M. & Rychlewski, L. (2001) Unusual evolutionary history of the tRNA splicing endonuclease EndA: Relationship to the LAGLIDADG and PD-(D/E)XK deoxyribonucleases. Protein Sci. 10, 656-660.
-
(2001)
Protein Sci.
, vol.10
, pp. 656-660
-
-
Bujnicki, J.M.1
Rychlewski, L.2
-
153
-
-
0032502894
-
Crystal structure and evolution of a transfer RNA splicing enzyme
-
Li, H., Trotta, C.R. & Abelson, J. (1998) Crystal structure and evolution of a transfer RNA splicing enzyme. Science 280, 279-284.
-
(1998)
Science
, vol.280
, pp. 279-284
-
-
Li, H.1
Trotta, C.R.2
Abelson, J.3
-
154
-
-
0033822258
-
Atomic model of the 5-methylcytosine-specific restriction enzyme McrA reveals an atypical zinc-finger and structural similarity to ββα Me endonucleases
-
Bujnicki, J.M., Radlinska, M. & Rychlewski, L. (2000) Atomic model of the 5-methylcytosine-specific restriction enzyme McrA reveals an atypical zinc-finger and structural similarity to ββα Me endonucleases. Mol. Microbiol. 37, 1280-1281.
-
(2000)
Mol. Microbiol.
, vol.37
, pp. 1280-1281
-
-
Bujnicki, J.M.1
Radlinska, M.2
Rychlewski, L.3
-
155
-
-
0002347541
-
The crystal structure of the DNase domain of colicin E7 in complex with its inhibitor Im7 protein
-
Ko, T.P., Liao, C.C., Ku, W.Y., Chak, K.F. & Yuan, H.S. (1999) The crystal structure of the DNase domain of colicin E7 in complex with its inhibitor Im7 protein. Structure Fold. Des. 7, 91-102.
-
(1999)
Structure Fold. Des.
, vol.7
, pp. 91-102
-
-
Ko, T.P.1
Liao, C.C.2
Ku, W.Y.3
Chak, K.F.4
Yuan, H.S.5
-
156
-
-
0035667495
-
Three-dimensional modeling of the I-TevI homing endonuclease catalytic domain, a GIY-YIG superfamily member, using NMR restraints and Monte Carlo dynamics
-
Bujnicki, J.M., Rotkiewicz, P., Kolinski, A. & Rychlewski, L. (2001) Three-dimensional modeling of the I-TevI homing endonuclease catalytic domain, a GIY-YIG superfamily member, using NMR restraints and Monte Carlo dynamics. Protein Eng. 14, 717-721.
-
(2001)
Protein Eng.
, vol.14
, pp. 717-721
-
-
Bujnicki, J.M.1
Rotkiewicz, P.2
Kolinski, A.3
Rychlewski, L.4
-
157
-
-
0026634757
-
McrBC: A multisubunit GTP-dependent restriction endonuclease
-
Sutherland, E., Coe, L. & Raleigh, E.A. (1992) McrBC: A multisubunit GTP-dependent restriction endonuclease. J. Mol. Biol. 225, 327-348.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 327-348
-
-
Sutherland, E.1
Coe, L.2
Raleigh, E.A.3
-
158
-
-
0033522512
-
DNA translocation blockage, a general mechanism of cleavage site selection by type I restriction enzymes
-
Janscak, P., MacWilliams, M.P., Sandmeier, U., Nagaraja, V. & Bickle, T.A. (1999) DNA translocation blockage, a general mechanism of cleavage site selection by type I restriction enzymes. EMBO J. 18, 2638-2647.
-
(1999)
EMBO J.
, vol.18
, pp. 2638-2647
-
-
Janscak, P.1
Macwilliams, M.P.2
Sandmeier, U.3
Nagaraja, V.4
Bickle, T.A.5
-
159
-
-
0033516513
-
The McrBC endonuclease translocates DNA in a reaction dependent on GTP hydrolysis
-
Panne, D., Raleigh, E.A. & Bickle, T.A. (1999) The McrBC endonuclease translocates DNA in a reaction dependent on GTP hydrolysis. J Mol. Biol. 290, 49-60.
-
(1999)
J Mol. Biol.
, vol.290
, pp. 49-60
-
-
Panne, D.1
Raleigh, E.A.2
Bickle, T.A.3
-
160
-
-
0019376491
-
Structure and mechanism of multifunctional restriction endonucleases
-
Yuan, R. (1981) Structure and mechanism of multifunctional restriction endonucleases. Annu. Rev. Biochem. 50, 285-319.
-
(1981)
Annu. Rev. Biochem.
, vol.50
, pp. 285-319
-
-
Yuan, R.1
-
161
-
-
0025995309
-
Endonuclease (R) subunits of type-I and type-III restriction-modification enzymes contain a helicase-like domain
-
Gorbalenya, A.E. & Koonin, E.V. (1991) Endonuclease (R) subunits of type-I and type-III restriction-modification enzymes contain a helicase-like domain. FEBS Lett. 291, 277-281.
-
(1991)
FEBS Lett.
, vol.291
, pp. 277-281
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
-
162
-
-
0027182114
-
Helicases: Amino acid sequence comparisons and structure-function relationships
-
Gorbalenya, A.E. & Koonin, E.V. (1993) Helicases: amino acid sequence comparisons and structure-function relationships. Curr. Opin. Struct. Biol. 3, 419-429.
-
(1993)
Curr. Opin. Struct. Biol.
, vol.3
, pp. 419-429
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
-
163
-
-
0033428970
-
Helicase motifs: The engine that powers DNA unwinding
-
Hall, M.C. & Matson, S.W. (1999) Helicase motifs: The engine that powers DNA unwinding. Mol. Microbiol. 34, 867-877.
-
(1999)
Mol. Microbiol.
, vol.34
, pp. 867-877
-
-
Hall, M.C.1
Matson, S.W.2
-
164
-
-
0031911760
-
Comparisons between the structures of HCV and Rep helicases reveal structural similarities between SF1 and SF2 super-families of helicases
-
Korolev, S., Yao, N., Lohman, T.M., Weber, P.C. & Waksman, G. (1998) Comparisons between the structures of HCV and Rep helicases reveal structural similarities between SF1 and SF2 super-families of helicases. Protein Sci. 7, 605-610.
-
(1998)
Protein Sci.
, vol.7
, pp. 605-610
-
-
Korolev, S.1
Yao, N.2
Lohman, T.M.3
Weber, P.C.4
Waksman, G.5
-
165
-
-
0030850355
-
The recognition of methylated DNA by the GTP-dependent restriction endonuclease McrBC resides in the N-terminal domain of McrB
-
Gast, F.U., Brinkmann, T., Pieper, U., Kruger, T., Noyer-Weidner, M. & Pingoud, A. (1997) The recognition of methylated DNA by the GTP-dependent restriction endonuclease McrBC resides in the N-terminal domain of McrB. Biol Chem. 378, 975-982.
-
(1997)
Biol Chem.
, vol.378
, pp. 975-982
-
-
Gast, F.U.1
Brinkmann, T.2
Pieper, U.3
Kruger, T.4
Noyer-Weidner, M.5
Pingoud, A.6
-
166
-
-
0032701969
-
Defining the location and function of domains of McrB by deletion mutagenesis
-
Pieper, U., Schweitzer, T., Groll, D.H. & Pingoud, A. (1999) Defining the location and function of domains of McrB by deletion mutagenesis. Biol Chem. 380, 1225-1230.
-
(1999)
Biol Chem.
, vol.380
, pp. 1225-1230
-
-
Pieper, U.1
Schweitzer, T.2
Groll, D.H.3
Pingoud, A.4
-
167
-
-
0032530024
-
McrBs, a modulator peptide for McrBC activity
-
Panne, D., Raleigh, E.A. & Bickle, T.A. (1998) McrBs, a modulator peptide for McrBC activity. EMBO J. 17, 5477-5483.
-
(1998)
EMBO J.
, vol.17
, pp. 5477-5483
-
-
Panne, D.1
Raleigh, E.A.2
Bickle, T.A.3
-
168
-
-
0033600727
-
The GTP-binding domain of McrB: More than just a variation on a common theme?
-
Pieper, U., Schweitzer, T., Groll, D.H., Gast, F.U. & Pingoud, A. (1999) The GTP-binding domain of McrB: more than just a variation on a common theme? J. Mol. Biol. 292, 547-556.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 547-556
-
-
Pieper, U.1
Schweitzer, T.2
Groll, D.H.3
Gast, F.U.4
Pingoud, A.5
-
169
-
-
0029328549
-
A 200-amino acid ATPase module in search of a basic function
-
Confalonieri, F. & Duguet, M. (1995) A 200-amino acid ATPase module in search of a basic function. BioEssays 17, 639-650.
-
(1995)
BioEssays
, vol.17
, pp. 639-650
-
-
Confalonieri, F.1
Duguet, M.2
-
170
-
-
0031973716
-
The AAA team: Related ATPases with diverse functions
-
Patel, S. & Latterich, M. (1998) The AAA team: Related ATPases with diverse functions. Trends Cell Biol. 8, 65-71.
-
(1998)
Trends Cell Biol.
, vol.8
, pp. 65-71
-
-
Patel, S.1
Latterich, M.2
-
171
-
-
0032969563
-
AAA+: A class of chaperone-like ATPases associated with the assembly, operation and disassembly of protein complexes
-
Neuwald, A.F., Aravind, L., Spouge, J.L. & Koonin, E.V. (1999) AAA+: A class of chaperone-like ATPases associated with the assembly, operation and disassembly of protein complexes. Genome Res. 9, 27-43.
-
(1999)
Genome Res.
, vol.9
, pp. 27-43
-
-
Neuwald, A.F.1
Aravind, L.2
Spouge, J.L.3
Koonin, E.V.4
-
172
-
-
0034632063
-
AAA proteins. Lords of the ring
-
Vale, R.D. (2000) AAA proteins. Lords of the ring. J Cell Biol. 150, F13-F19
-
(2000)
J Cell Biol.
, vol.150
-
-
Vale, R.D.1
-
173
-
-
0035876202
-
The McrBC restriction endonuclease assembles into a ring structure in the presence of G nucleotides
-
Panne, D., Muller, S.A., Wirtz, S., Engel, A. & Bickle, T.A. (2001) The McrBC restriction endonuclease assembles into a ring structure in the presence of G nucleotides. EMBO J. 20, 3210-3217.
-
(2001)
EMBO J.
, vol.20
, pp. 3210-3217
-
-
Panne, D.1
Muller, S.A.2
Wirtz, S.3
Engel, A.4
Bickle, T.A.5
-
174
-
-
0026087311
-
A family of regulatory genes associated with type II restriction-modification systems
-
Tao, T., Bourne, J.C. & Blumenthal, R.M. (1991) A family of regulatory genes associated with type II restriction-modification systems. J. Bacteriol. 173, 1367-1375.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 1367-1375
-
-
Tao, T.1
Bourne, J.C.2
Blumenthal, R.M.3
-
175
-
-
0030595337
-
Structural classification of HTH DNA-binding domains and protein-DNA interaction modes
-
Wintjens, R. & Rooman, M. (1996) Structural classification of HTH DNA-binding domains and protein-DNA interaction modes. J. Mol. Biol. 262, 294-313.
-
(1996)
J. Mol. Biol.
, vol.262
, pp. 294-313
-
-
Wintjens, R.1
Rooman, M.2
-
176
-
-
0029030933
-
The Eco72IC gene specifies a trans-acting factor which influences expression of both DNA methyltransferase and endonuclease from the Eco72I restriction-modification system
-
Rimseliene, R., Vaisvila, R. & Janulaitis, A. (1995) The Eco72IC gene specifies a trans-acting factor which influences expression of both DNA
-
(1995)
Gene
, vol.157
, pp. 217-219
-
-
Rimseliene, R.1
Vaisvila, R.2
Janulaitis, A.3
-
177
-
-
0033988985
-
Role and mechanism of action of C.PvuII, a regulatory protein conserved among restriction-modification systems
-
Vijesurier, R.M., Carlock, L., Blumenthal, R.M. & Dunbar, J.C. (2000) Role and mechanism of action of C.PvuII, a regulatory protein conserved among restriction-modification systems. J Bacteriol. 182, 477-487.
-
(2000)
J Bacteriol.
, vol.182
, pp. 477-487
-
-
Vijesurier, R.M.1
Carlock, L.2
Blumenthal, R.M.3
Dunbar, J.C.4
-
178
-
-
0028865833
-
The regulatory C proteins from different restriction-modification systems can crosscomplement
-
Ives, C.L., Sohail, A. & Brooks, J.E. (1995) The regulatory C proteins from different restriction-modification systems can crosscomplement. J. Bacteriol. 177, 6313-6315.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 6313-6315
-
-
Ives, C.L.1
Sohail, A.2
Brooks, J.E.3
-
179
-
-
0032568598
-
Restriction-modification gene complexes as selfish gene entities: Roles of a regulatory system in their establishment, maintenance and apoptotic mutual exclusion
-
Nakayama, Y. & Kobayashi, I. (1998) Restriction-modification gene complexes as selfish gene entities: Roles of a regulatory system in their establishment, maintenance and apoptotic mutual exclusion. Proc. Natl. Acad. Sci. U.S.A. 95, 6442-6447.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 6442-6447
-
-
Nakayama, Y.1
Kobayashi, I.2
-
180
-
-
0027968034
-
Comparative molecular biology of lambdoid phages
-
Campbell, A. (1994) Comparative molecular biology of lambdoid phages. Annu. Rev. Microbiol. 48, 193-222.
-
(1994)
Annu. Rev. Microbiol.
, vol.48
, pp. 193-222
-
-
Campbell, A.1
-
181
-
-
0031823984
-
Selfishness and death: Raison d'etre of restriction, recombination and mitochondria
-
Kobayashi, I. (1998) Selfishness and death: Raison d'etre of restriction, recombination and mitochondria. Trends Genet. 14, 368-374.
-
(1998)
Trends Genet.
, vol.14
, pp. 368-374
-
-
Kobayashi, I.1
-
182
-
-
0031782375
-
Control of expression of LlaI restriction in Lactococcus lactis
-
O'Sullivan, D.J. & Klaenhammer, T.R. (1998) Control of expression of LlaI restriction in Lactococcus lactis. Mol. Microbiol. 27, 1009-1020.
-
(1998)
Mol. Microbiol.
, vol.27
, pp. 1009-1020
-
-
O'Sullivan, D.J.1
Klaenhammer, T.R.2
-
183
-
-
0029019807
-
Gene pvuIIW: A possible modulator of Pvu II endonuclease subunit association
-
Adams, G.M. & Blumenthal, R.M. (1995) Gene pvuIIW: A possible modulator of Pvu II endonuclease subunit association. Gene 157, 193-199.
-
(1995)
Gene
, vol.157
, pp. 193-199
-
-
Adams, G.M.1
Blumenthal, R.M.2
-
184
-
-
0024022277
-
Cloning and complete nucleotide sequences of the type II restriction-modification genes of Salmonella infantis
-
Karreman, C. & de Waard, A. (1988) Cloning and complete nucleotide sequences of the type II restriction-modification genes of Salmonella infantis. J. Bacteriol. 170, 2527-2532.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 2527-2532
-
-
Karreman, C.1
De Waard, A.2
-
185
-
-
0029017320
-
A transposon-like sequence adjacent to the AccI restriction-modification operon
-
Brassard, S., Paquet, H. & Roy, P.H. (1995) A transposon-like sequence adjacent to the AccI restriction-modification operon. Gene 157, 69-72.
-
(1995)
Gene
, vol.157
, pp. 69-72
-
-
Brassard, S.1
Paquet, H.2
Roy, P.H.3
-
186
-
-
0031596401
-
Sequence comparison of EcoHK31I and EaeI restriction-modification systems suggest an intergenic transfer of genetic material
-
Lee, K.F., Shaw, P.C., Picone, S.J., Wilson, G.G. & Lunnen, K.D. (1998) Sequence comparison of EcoHK31I and EaeI restriction-modification systems suggest an intergenic transfer of genetic material. Biol. Chem. 379, 437-442.
-
(1998)
Biol. Chem.
, vol.379
, pp. 437-442
-
-
Lee, K.F.1
Shaw, P.C.2
Picone, S.J.3
Wilson, G.G.4
Lunnen, K.D.5
-
187
-
-
0029061973
-
Identification of a gene encoding a DNA invertase-like enzyme adjacent to the PaeR7I restriction-modification system
-
Vaisvila, R., Vilkaitis, G. & Janulaitis, A. (1995) Identification of a gene encoding a DNA invertase-like enzyme adjacent to the PaeR7I restriction-modification system. Gene 157, 81-84.
-
(1995)
Gene
, vol.157
, pp. 81-84
-
-
Vaisvila, R.1
Vilkaitis, G.2
Janulaitis, A.3
-
188
-
-
0030615227
-
Cloning and characterization of the BglII restriction-modification system reveals a possible evolutionary footprint
-
Anton, B.P., Heiter, D.F., Benner, J.S., Hess, E.J., Greenough, L., Moran, L.S., Slatko, B.E. & Brooks, J.E. (1997) Cloning and characterization of the BglII restriction-modification system reveals a possible evolutionary footprint. Gene 187, 19-27.
-
(1997)
Gene
, vol.187
, pp. 19-27
-
-
Anton, B.P.1
Heiter, D.F.2
Benner, J.S.3
Hess, E.J.4
Greenough, L.5
Moran, L.S.6
Slatko, B.E.7
Brooks, J.E.8
-
189
-
-
15644371357
-
Cloning and expression of the ApaLI, NspI, NspHI, SacI, Sca I and SapI restriction-modification systems in Escherichia coli
-
Xu, S.Y., Xiao, J.P., Ettwiller, L., Holden, M., Aliotta, J., Poh, C.L., Dalton, M., Robinson, D.P., Petronzio, T.R., Moran, L., Ganatra, M., Ware, J., Slatko, B. & Benner, J. (1998) Cloning and expression of the ApaLI, NspI, NspHI, SacI, Sca I and SapI restriction-modification systems in Escherichia coli. Mol. Gen. Genet. 260, 226-231.
-
(1998)
Mol. Gen. Genet.
, vol.260
, pp. 226-231
-
-
Xu, S.Y.1
Xiao, J.P.2
Ettwiller, L.3
Holden, M.4
Aliotta, J.5
Poh, C.L.6
Dalton, M.7
Robinson, D.P.8
Petronzio, T.R.9
Moran, L.10
Ganatra, M.11
Ware, J.12
Slatko, B.13
Benner, J.14
-
190
-
-
0031791725
-
Molecular characterization of the Lactococcus lactis LlaKR2I restriction-modification system and effect of an IS982 element positioned between the restriction and modification genes
-
Twomey, D.P., McKay, L.L. & O'Sullivan, D. J. (2000) Molecular characterization of the Lactococcus lactis LlaKR2I restriction-modification system and effect of an IS982 element positioned between the restriction and modification genes. J. Bacteriol. 180, 5844-5854.
-
(2000)
J. Bacteriol.
, vol.180
, pp. 5844-5854
-
-
Twomey, D.P.1
McKay, L.L.2
O'Sullivan, D.J.3
-
191
-
-
0029067358
-
Cloning and characterization of the unusual restriction-modification system comprising two restriction endonucleases and one methyltransferase
-
Stankevicius, K., Povilionis, P., Lubys, A., Menkevicius, S. & Janulaitis, A. (1995) Cloning and characterization of the unusual restriction-modification system comprising two restriction endonucleases and one methyltransferase. Gene 157, 49-53.
-
(1995)
Gene
, vol.157
, pp. 49-53
-
-
Stankevicius, K.1
Povilionis, P.2
Lubys, A.3
Menkevicius, S.4
Janulaitis, A.5
-
192
-
-
0035175516
-
REBASE-restriction enzymes and methylases
-
Roberts, R. J. & Macelis, D. (2001) REBASE-restriction enzymes and methylases. Nucleic Acids Res. 29, 268-269.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 268-269
-
-
Roberts, R.J.1
Macelis, D.2
-
193
-
-
0034284411
-
Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome
-
Kong, H., Lin, L.F., Porter, N., Stickel, S., Byrd, D., Posfai, J. & Roberts, R.J. (2000) Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome. Nucleic Acids Res. 28, 3216-3223.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 3216-3223
-
-
Kong, H.1
Lin, L.F.2
Porter, N.3
Stickel, S.4
Byrd, D.5
Posfai, J.6
Roberts, R.J.7
-
194
-
-
0035155797
-
Specificities of eleven different DNA methyltransferases of Helicobacter pylori strain 26695
-
Vitkute, J., Stankevicius, K., Tamulaitiene, G., Maneliene, Z., Timinskas, A., Berg, D.E. & Janulaitis, A. (2001) Specificities of eleven different DNA methyltransferases of Helicobacter pylori strain 26695. J Bacteriol. 183, 443-450.
-
(2001)
J Bacteriol.
, vol.183
, pp. 443-450
-
-
Vitkute, J.1
Stankevicius, K.2
Tamulaitiene, G.3
Maneliene, Z.4
Timinskas, A.5
Berg, D.E.6
Janulaitis, A.7
-
195
-
-
0034707190
-
Insertion with long target duplication: A mechanism for gene mobility suggested from comparison of two related bacterial genomes
-
Nobusato, A., Uchiyama, I., Ohashi, S. & Kobayashi, I. (2000) Insertion with long target duplication: A mechanism for gene mobility suggested from comparison of two related bacterial genomes. Gene 259, 99-108.
-
(2000)
Gene
, vol.259
, pp. 99-108
-
-
Nobusato, A.1
Uchiyama, I.2
Ohashi, S.3
Kobayashi, I.4
-
196
-
-
0034707197
-
Comparison between Pyrococcus horikoshii and Pyrococcus abyssi genome sequences reveals linkage of restriction-modification genes with large genome polymorphisms
-
Chinen, A., Uchiyama, I. & Kobayashi, I. (2000) Comparison between Pyrococcus horikoshii and Pyrococcus abyssi genome sequences reveals linkage of restriction-modification genes with large genome polymorphisms. Gene 259, 109-121.
-
(2000)
Gene
, vol.259
, pp. 109-121
-
-
Chinen, A.1
Uchiyama, I.2
Kobayashi, I.3
-
197
-
-
0033977082
-
Differential distribution of novel restriction-modification systems in clonal lineages of Neisseria meningitidis
-
Claus, H., Friedrich, A., Frosch, M. & Vogel, U. (2000) Differential distribution of novel restriction-modification systems in clonal lineages of Neisseria meningitidis. J Bacteriol. 182, 1296-1303.
-
(2000)
J Bacteriol.
, vol.182
, pp. 1296-1303
-
-
Claus, H.1
Friedrich, A.2
Frosch, M.3
Vogel, U.4
-
198
-
-
0034662859
-
Resolving the relationships of resolving enzymes
-
Lilley, D.M. & White, M.F. (2000) Resolving the relationships of resolving enzymes. Proc. Natl. Acad. Sci. U.S.A. 97, 9351-9353.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 9351-9353
-
-
Lilley, D.M.1
White, M.F.2
-
199
-
-
0034612217
-
Crystal structure of RPB5, a universal eukaryotic RNA polymerase subunit and transcription factor interaction target
-
Todone, F., Weinzierl, R.O., Brick, P. & Onesti, S. (2000) Crystal structure of RPB5, a universal eukaryotic RNA polymerase subunit and transcription factor interaction target. Proc. Natl. Acad. Sci. U.S.A. 97, 6306-6310.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 6306-6310
-
-
Todone, F.1
Weinzierl, R.O.2
Brick, P.3
Onesti, S.4
-
200
-
-
0031576361
-
Intermediate sequences increase the detection of homology between sequences
-
Park, J., Teichmann, S.A., Hubbard, T. & Chothia, C. (1997) Intermediate sequences increase the detection of homology between sequences. J. Mol. Biol. 273, 349-354.
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 349-354
-
-
Park, J.1
Teichmann, S.A.2
Hubbard, T.3
Chothia, C.4
-
201
-
-
0034237578
-
Large-scale comparison of protein sequence alignment algorithms with structure alignments
-
Sauder, J.M., Arthur, J.W. &Dunbrack, R.L. (2000) Large-scale comparison of protein sequence alignment algorithms with structure alignments. Proteins 40, 6-22.
-
(2000)
Proteins
, vol.40
, pp. 6-22
-
-
Sauder, J.M.1
Arthur, J.W.2
Dunbrack, R.L.3
-
202
-
-
0032538280
-
Towards the design of rare cutting restriction endonucleases: Using directed evolution to generate variants of EcoRV differing in their substrate specificity by two orders of magnitude
-
Lanio, T., Jeltsch, A. & Pingoud, A. (1998) Towards the design of rare cutting restriction endonucleases: Using directed evolution to generate variants of EcoRV differing in their substrate specificity by two orders of magnitude. J. Mol. Biol. 283, 59-69.
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 59-69
-
-
Lanio, T.1
Jeltsch, A.2
Pingoud, A.3
-
203
-
-
0032533367
-
Protein engineering of the restriction endonuclease EcoRV-structure-guided design of enzyme variants that recognize the base pairs flanking the recognition site
-
Schottler, S., Wenz, C., Lanio, T., Jeltsch, A. & Pingoud, A. (1998) Protein engineering of the restriction endonuclease EcoRV-structure-guided design of enzyme variants that recognize the base pairs flanking the recognition site. Eur. J. Biochem. 258, 184-191.
-
(1998)
Eur. J. Biochem.
, vol.258
, pp. 184-191
-
-
Schottler, S.1
Wenz, C.2
Lanio, T.3
Jeltsch, A.4
Pingoud, A.5
-
204
-
-
0034026486
-
On the possibilities and limitations of rational protein design to expand the specificity of restriction enzymes: A case study employing EcoRV as the target
-
Lanio, T., Jeltsch, A. & Pingoud, A. (2000) On the possibilities and limitations of rational protein design to expand the specificity of restriction enzymes: A case study employing EcoRV as the target. Protein Eng. 13, 275-281.
-
(2000)
Protein Eng.
, vol.13
, pp. 275-281
-
-
Lanio, T.1
Jeltsch, A.2
Pingoud, A.3
-
205
-
-
0031760138
-
Cloning and characterization of the gene encoding a new DNA methyltransferase from Neisseria gonorrhoeae
-
Radlinska, M. & Piekarowicz, A. (1998) Cloning and characterization of the gene encoding a new DNA methyltransferase from Neisseria gonorrhoeae. Biol. Chem. 379, 1391-1395.
-
(1998)
Biol. Chem.
, vol.379
, pp. 1391-1395
-
-
Radlinska, M.1
Piekarowicz, A.2
-
206
-
-
0027977143
-
2.1 A structure of Serratia endonuclease suggests a mechanism for binding to double-stranded DNA
-
Miller, M.D., Tanner, J., Alpaugh, M., Benedik, M.J. & Krause, K.L. (1994) 2.1 A structure of Serratia endonuclease suggests a mechanism for binding to double-stranded DNA. Nat. Struct. Biol. 1, 461-468.
-
(1994)
Nat. Struct. Biol.
, vol.1
, pp. 461-468
-
-
Miller, M.D.1
Tanner, J.2
Alpaugh, M.3
Benedik, M.J.4
Krause, K.L.5
|