RNA Fingerprinting of Specific Plant Cell Types: Adaptation to Plants and Optimization of RNA Arbitrarily Primed PCR (RAP-PCR)

Plant Molecular Biology Reporter

Volumn 19, Issue 1, 2001, Pages 33-48

  Menke, Ulrich ^a,b   Mueller Roeber, Bernd ^a  

^a MAX PLANCK INSTITUTE OF MOLECULAR PLANT PHYSIOLOGY   (Germany)

^b AgrEvo Biochemie   (Germany)

Author keywords

Differential display; Differential gene expression; Guard cells; RT PCR; Solanum tuberosum

Indexed keywords

EID: 0035627616     PISSN: 07359640     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02824076     Document Type: Article

References (25)

1. Becker-André M and Hahlbrock K (1989) Absolute mRNA quantification using the polymerase chain reaction (PCR). A novel approach by PCR aided transcript titration assay (PATTY). Nucl Acids Res 17: 9437-9446.
2. Chang S, Puryear J and Cairney J (1993) A simple and efficient method for isolating RNA from pine trees. Plant Mol Biol Reptr 11: 113-116.
3. Consalez GG, Cabibbo A, Corradi A, Alli C, Sardella M, Sitia R and Fesce R (1999) A computer-driven approach to PCR-based differential screening, alternative to differential display. Bioinformatics 15: 93-105.
4. Dalal SS, Welsh J, Tkachenko A, Ralph D, DiCicco-Bloom E, Bordás L, McClelland M and Chada K (1994) Rapid isolation of tissue-specific and developmentally regulated brain cDNAs using RNA arbitrarily primed PCR (RAP-PCR). J Mol Neurosci 5: 93-104.
5. Desprez T, Amselem J, Caboche M and Höfte H (1998) Differential gene expression in Arabidopsis monitored using cDNA arrays. Plant J 14: 643-652.
6. Kopka J, Provart NJ and Müller-Röber B (1997) Potato guard cells respond to drying soil by a complex change in the expression of genes related to carbon metabolism and turgor regulation. Plant J 11: 871-882.
7. Li F, Barnathan ES and Kariko K (1994) Rapid method for screening and cloning cDNAs generated in differential mRNA displays: Application of Northern blot for affinity capturing of cDNAs. Nucl Acids Res 22: 1764-1765.
8. Liang P and Pardee AB (1992) Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257: 967-971.
9. Mathieu-Daude F, Welsh J, Vogt T and McClelland M (1996) DNA rehybridization during PCR: the 'Cot effect' and its consequences. Nucl Acids Res 24: 2080-2086.
10. Mueller-Roeber B, Ellenberg J, Provart N, Willmitzer L, Busch H, Becker D, Dietrich P, Hoth S and Hedrich R (1995) Cloning and electrophysiological analysis of KST1, an inward-rectifying K+ channel expressed in potato guard cells. EMBO J 14: 2409-2416.
11. Nelson KK, Bacon B and Christensen MJ (1996) Selenite supplementation decreases expression of MAZ in HT29 human colon adenocarcinoma cells. Nutrition and Cancer 26: 73-81.
12. Oh B-J, Balint DE and Giovannoni JJ (1995) A modified procedure for PCR-based differential display and demonstration of use in plants for isolation of genes related to fruit ripening. Plant Mol Biol Reptr 13: 70-81.
13. Ruan Y, Gilmore J and Conner T (1998) Towards Arabidopsis genome analysis: monitoring expression profiles of 1400 genes using cDNA microarrays. Plant J 6: 821-833.
14. Sakai H, Nakashima S, Yoshimura S, Nishimura Y, Sakai N and Nozawa Y (1997) Identification of differentially expressed mRNAs during rat C6 glial cell differentiation by mRNA fingerprinting using arbitrarily primed PCR (RAP). Neurosci Lett 229: 93-96.
15. nd Edition. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
16. Siebert PD and Larric JW (1993) PCR MIMICs: Competitive DNA fragments for use as internal standards in quantitative PCR. BioTechniques 14: 244-249.
17. Stone B and Wharton W (1994) Targeted RNA fingerprinting: the cloning of differentially-expressed cDNA fragments enriched for members of the zinc finger gene family. Nucl Acids Res 22: 2612-2618.
18. Sundfors D and Collan Y (1996) Basics of quantitative polymerase chain reaction: 2. Electrophoresis and quantitation of polymerase chain reaction products. Electrophoresis 17: 44-48.
19. Welsh J and McClelland M (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucl Acids Res 18: 7213-7218.
20. Welsh J, Chada K, Dalal SS, Cheng R, Ralph D and McClelland M (1992) Arbitrarily primed PCR fingerprinting of RNA. Nucl Acids Res 20: 4965-4970.
21. Wong KK, Mok, C-H, Welsh JT, McClelland M, Tsao S-W and Berkowitz R (1993) Identification of differentially expressed RNA in human ovarian carcinoma cells by arbitrarily primed PCR fingerprinting of total RNAs. Int J Oncol 3: 13-17.
22. Yoshikawa T, Xing G-q and Detera-Wadleigh SD (1995) Detection, simultaneous display and direct sequencing of multiple nuclear hormone receptor genes using bilaterally targeted RNA fingerprinting. Biochim Biophys Acta 1264: 63-71.
23. Zegzouti H, Marty C, Jones B, Bouquin T, Latché A, Pech JC and Bouzayen M (1997) Improved screening of cDNAs generated by differential display enables the selection of true positives and the isolation of weakly expressed messages. Plant Mol Biol Reptr 15: 236-245.
24. Zhang H, Zhang R and Liang P (1996) Differential screening of gene expression difference enriched by differential display. Nucl Acids Res 24: 2454-2455.
25. Zhao S, Ooi SL, Yang F-C and Pardee AB (1996) Three methods for identification of true positive cloned cDNA fragments in differential display. BioTechniques 20: 400-404.