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Volumn 50, Issue 2, 2001, Pages 156-169

Generalized frequency coding: A method of preparing polymorphic multistate characters for phylogenetic analysis

Author keywords

Generalized frequency coding; Phylogenetic systematics; Polymorphic multistate characters; Step matrix coding

Indexed keywords

ANIMAL; ARTICLE; BIOMETRY; CLASSIFICATION; COMPARATIVE STUDY; GENETIC DATABASE; GENETIC POLYMORPHISM; GENETICS; METHODOLOGY; PHYLOGENY; SNAKE;

EID: 0035527355     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1080/10635150121392     Document Type: Article
Times cited : (45)

References (51)
  • 1
    • 0001602202 scopus 로고
    • A simple method for establishing taxonomic characters from measurement data
    • ALMEIDA, M. T., AND F. A. BISBY. 1984. A simple method for establishing taxonomic characters from measurement data. Taxon 33:405-409.
    • (1984) Taxon , vol.33 , pp. 405-409
    • Almeida, M.T.1    Bisby, F.A.2
  • 2
    • 0001553779 scopus 로고
    • Methods for coding variable morphological features for numerical taxonomic analysis
    • ARCHIE, J. W. 1985. Methods for coding variable morphological features for numerical taxonomic analysis. Syst. Zool. 34:326-345.
    • (1985) Syst. Zool. , vol.34 , pp. 326-345
    • Archie, J.W.1
  • 3
    • 0009259902 scopus 로고
    • A simple procedure for establishing discrete characters from measurement data, applicable to cladistics
    • BAUM, B. R. 1988. A simple procedure for establishing discrete characters from measurement data, applicable to cladistics. Taxon 37:63-70.
    • (1988) Taxon , vol.37 , pp. 63-70
    • Baum, B.R.1
  • 4
    • 0031084426 scopus 로고    scopus 로고
    • Searching for phylogenetic trees under the frequency parsimony criterion: An approximation using generalized parsimony
    • BERLOCHER, S. H., AND D. L. SWOFFORD. 1997. Searching for phylogenetic trees under the frequency parsimony criterion: An approximation using generalized parsimony. Syst. Biol. 46:211-215.
    • (1997) Syst. Biol. , vol.46 , pp. 211-215
    • Berlocher, S.H.1    Swofford, D.L.2
  • 5
    • 0021565668 scopus 로고
    • The application of electrophoretic data in systematic studies
    • BUTH, D. G. 1984. The application of electrophoretic data in systematic studies. Annu. Rev. Ecol. Syst. 15:501-522.
    • (1984) Annu. Rev. Ecol. Syst. , vol.15 , pp. 501-522
    • Buth, D.G.1
  • 6
    • 0001822040 scopus 로고
    • Anguid lizards of the genus Abronia: Revisionary notes, description of four new species, a phylogenetic analysis, and key
    • CAMPBELL, J. A., AND D. R. FROST. 1993. Anguid lizards of the genus Abronia: Revisionary notes, description of four new species, a phylogenetic analysis, and key. Bull. Am. Mus. Nat. Hist. 216:1-121.
    • (1993) Bull. Am. Mus. Nat. Hist. , vol.216 , pp. 1-121
    • Campbell, J.A.1    Frost, D.R.2
  • 7
    • 0024874824 scopus 로고
    • Quantitative characters in phylogenetic analysis
    • CHAPPILL, J. A. 1989. Quantitative characters in phylogenetic analysis. Cladistics 5:217-234.
    • (1989) Cladistics , vol.5 , pp. 217-234
    • Chappill, J.A.1
  • 8
    • 0001838717 scopus 로고    scopus 로고
    • A phylogeny of the gulls (Aves: Larinae) inferred from osteological and integumentary characters
    • CHU, P. C. 1998. A phylogeny of the gulls (Aves: Larinae) inferred from osteological and integumentary characters. Cladistics 14:1-43.
    • (1998) Cladistics , vol.14 , pp. 1-43
    • Chu, P.C.1
  • 9
    • 84959758123 scopus 로고
    • Congruence between morphometric and allozyme data for Menidia species: A reappraisal
    • COLLESS, D. H. 1980. Congruence between morphometric and allozyme data for Menidia species: A reappraisal. Syst. Zool. 29:288-299.
    • (1980) Syst. Zool. , vol.29 , pp. 288-299
    • Colless, D.H.1
  • 10
    • 84989436811 scopus 로고
    • Cladistics and computers: A chironomid conundrum
    • CRANSTON, P. S., AND C. J. HUMPHRIES. 1988. Cladistics and computers: A chironomid conundrum. Cladistics 4:72-92.
    • (1988) Cladistics , vol.4 , pp. 72-92
    • Cranston, P.S.1    Humphries, C.J.2
  • 11
    • 0008624368 scopus 로고
    • Phylogeny and historical biogeography of the palm-pitvipers, genus Bothriechis: Biochemical and morphological evidence
    • (J. A. Campbell and E. D. Brodie, Jr., eds.). Selva, Tyler, Texas
    • CROTHER, B. I., J. A. CAMPBELL, AND D. M. HILLIS. 1992. Phylogeny and historical biogeography of the palm-pitvipers, genus Bothriechis: Biochemical and morphological evidence. Pages 1-20 in Biology of the pitvipers (J. A. Campbell and E. D. Brodie, Jr., eds.). Selva, Tyler, Texas.
    • (1992) Biology of the Pitvipers , pp. 1-20
    • Crother, B.I.1    Campbell, J.A.2    Hillis, D.M.3
  • 12
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • FELSENSTEIN, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 13
    • 0024181337 scopus 로고
    • Phylogenies and quantitative characters
    • FELSENSTEIN, J. 1988. Phylogenies and quantitative characters. Annu. Rev. Ecol. Syst. 19:445-471.
    • (1988) Annu. Rev. Ecol. Syst. , vol.19 , pp. 445-471
    • Felsenstein, J.1
  • 14
    • 84989486147 scopus 로고
    • Methods for discrete coding of morphological characters for numerical analysis
    • GOLDMAN, N. 1988. Methods for discrete coding of morphological characters for numerical analysis. Cladistics 4:59-71.
    • (1988) Cladistics , vol.4 , pp. 59-71
    • Goldman, N.1
  • 16
    • 15644376019 scopus 로고    scopus 로고
    • The phylogenetic position of the Mexican black-tailed pitviper (Squamata: Viperidae: Crotalinae)
    • GUTBERLET, R. L., JR. 1998. The phylogenetic position of the Mexican black-tailed pitviper (Squamata: Viperidae: Crotalinae). Herpetologica 54:184-206.
    • (1998) Herpetologica , vol.54 , pp. 184-206
    • Gutberlet R.L., Jr.1
  • 17
    • 0002098601 scopus 로고    scopus 로고
    • To bury in sand: Phylogenetic relationships among lizard species of the boulengeri group, Liolaemus (Reptilia: Squamata: Tropiduridae), based on behavioral characters
    • HALLOY, M., R. ETHERIDGE, AND G. M. BURGHARDT. 1998. To bury in sand: Phylogenetic relationships among lizard species of the boulengeri group, Liolaemus (Reptilia: Squamata: Tropiduridae), based on behavioral characters. Herpetol. Monogr. 12:1-37.
    • (1998) Herpetol. Monogr. , vol.12 , pp. 1-37
    • Halloy, M.1    Etheridge, R.2    Burghardt, G.M.3
  • 18
    • 0034348767 scopus 로고    scopus 로고
    • A phylogenetic analysis of the tropidurine lizards (Squamata: Tropiduridae), including new characters of squamation and epidermal microstructure
    • HARVEY, M. B., AND R. L. GUTBERLET, JR. 2000. A phylogenetic analysis of the tropidurine lizards (Squamata: Tropiduridae), including new characters of squamation and epidermal microstructure. Zool. J. Linn. Soc. 128:189-233.
    • (2000) Zool. J. Linn. Soc. , vol.128 , pp. 189-233
    • Harvey, M.B.1    Gutberlet R.L., Jr.2
  • 19
    • 12044253190 scopus 로고
    • An empirical test of boot strapping as a method for assessing confidence in phylogenetic analysis
    • HILLIS, D. M., AND J. J. BULL. 1993. An empirical test of boot strapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42:182-192.
    • (1993) Syst. Biol. , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 20
    • 0027055554 scopus 로고
    • Signal, noise, and reliability in molecular phylogenetic analyses
    • HILLIS, D. M., AND J. P. HUELSENBECK. 1992. Signal, noise, and reliability in molecular phylogenetic analyses. J. Hered. 83:189-195.
    • (1992) J. Hered. , vol.83 , pp. 189-195
    • Hillis, D.M.1    Huelsenbeck, J.P.2
  • 21
    • 0000704795 scopus 로고    scopus 로고
    • Applications of molecular systematics: The state of the field and a look to the future
    • (D. M. Hillis, C. Moritz, and B. K. Mable, eds.). Sinauer, Sunderland, Massachusetts
    • HILLIS, D. M., B. K. MABLE, AND C. MORITZ. 1996. Applications of molecular systematics: The state of the field and a look to the future. Pages 515-543 in Molecular systematics, 2nd ed. (D. M. Hillis, C. Moritz, and B. K. Mable, eds.). Sinauer, Sunderland, Massachusetts.
    • (1996) Molecular Systematics, 2nd Ed. , pp. 515-543
    • Hillis, D.M.1    Mable, B.K.2    Moritz, C.3
  • 22
    • 0002265520 scopus 로고    scopus 로고
    • He systematics of chuck-wallas (Sauromalus) with a phylogenetic analysis of other iguanid lizards
    • HOLLINGSWORTH, B. D. 1998. The systematics of chuck-wallas (Sauromalus) with a phylogenetic analysis of other iguanid lizards. Herpetol. Monogr. 12:38-191.
    • (1998) Herpetol. Monogr. , vol.12 , pp. 38-191
    • Hollingsworth, B.D.1
  • 23
    • 0000109556 scopus 로고
    • Genetic evidence for relationships in the avian family Vireonidae
    • JOHNSON, N. K., R. M. ZINK, AND J. A. MARTEN. 1988. Genetic evidence for relationships in the avian family Vireonidae. Condor 90:428-445.
    • (1988) Condor , vol.90 , pp. 428-445
    • Johnson, N.K.1    Zink, R.M.2    Marten, J.A.3
  • 25
    • 0038855105 scopus 로고
    • Quantitative characters in computer taxonomy
    • (V. H. Heywood and J. McNeill, eds.). Systematics Association Publication No.6, London
    • KENDRICK, W. B. 1964. Quantitative characters in computer taxonomy. Pages 105-114 in Phenetic and phylogenetic classification (V. H. Heywood and J. McNeill, eds.). Systematics Association Publication No. 6, London.
    • (1964) Phenetic and Phylogenetic Classification , pp. 105-114
    • Kendrick, W.B.1
  • 26
    • 84959806898 scopus 로고
    • A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes)
    • KLUGE, A. G. 1989. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Syst. Zool. 38:7-25.
    • (1989) Syst. Zool. , vol.38 , pp. 7-25
    • Kluge, A.G.1
  • 27
    • 0030478306 scopus 로고    scopus 로고
    • Crotaline intergeneric relationships based on mitochondrial DNA sequence data
    • KRAUS, F., D. G. MINK, AND W. M. BROWN. 1996. Crotaline intergeneric relationships based on mitochondrial DNA sequence data. Copeia 1996:763-773.
    • (1996) Copeia , vol.1996 , pp. 763-773
    • Kraus, F.1    Mink, D.G.2    Brown, W.M.3
  • 28
    • 12044256396 scopus 로고
    • Coding polymorphic data: Examples from allozymes and ontogeny
    • MABEE, P. M., AND J. HUMPHRIES. 1993. Coding polymorphic data: Examples from allozymes and ontogeny. Syst. Biol. 42:166-181.
    • (1993) Syst. Biol. , vol.42 , pp. 166-181
    • Mabee, P.M.1    Humphries, J.2
  • 29
    • 0002711470 scopus 로고    scopus 로고
    • Phylogenetic systematics of crotaphytid lizards (Reptilia: Iguania: Crotaphytidae)
    • MCGUIRE, J. A. 1996. Phylogenetic systematics of crotaphytid lizards (Reptilia: Iguania: Crotaphytidae). Bull. Carnegie Mus. Nat. Hist. 32:1-143.
    • (1996) Bull. Carnegie Mus. Nat. Hist. , vol.32 , pp. 1-143
    • Mcguire, J.A.1
  • 30
    • 84962994178 scopus 로고
    • Congruence between morphological and allozyme data in evolutionary inference and character evolution
    • MICKEVICH, M. F., AND M. F. JOHNSON. 1976. Congruence between morphological and allozyme data in evolutionary inference and character evolution. Syst. Zool. 25:260-270.
    • (1976) Syst. Zool. , vol.25 , pp. 260-270
    • Mickevich, M.F.1    Johnson, M.F.2
  • 31
    • 0032225749 scopus 로고    scopus 로고
    • Phylophenetics: Frequencies and polymorphic characters in genealogical estimation
    • MURPHY, R. W., AND K. D. DOYLE. 1998. Phylophenetics: Frequencies and polymorphic characters in genealogical estimation. Syst. Biol. 47:737-761.
    • (1998) Syst. Biol. , vol.47 , pp. 737-761
    • Murphy, R.W.1    Doyle, K.D.2
  • 32
    • 0033516977 scopus 로고    scopus 로고
    • Molecular systematics and biogeographical history of pitvipers as determined by mitochondrial ribosomal DNA sequences
    • PARKINSON, C. L. 1999. Molecular systematics and biogeographical history of pitvipers as determined by mitochondrial ribosomal DNA sequences. Copeia 1999:576-586.
    • (1999) Copeia , pp. 576-586
    • Parkinson, C.L.1
  • 33
    • 84989444262 scopus 로고
    • The nature of cladistic data
    • PIMENTEL, R. A., AND R. RIGGINS. 1987. The nature of cladistic data. Cladistics 3:201-209.
    • (1987) Cladistics , vol.3 , pp. 201-209
    • Pimentel, R.A.1    Riggins, R.2
  • 34
    • 0039222327 scopus 로고    scopus 로고
    • Skull characters and the cladistic relationships of the Hispaniolan dwarf twig Anolis
    • POE, S. 1998. Skull characters and the cladistic relationships of the Hispaniolan dwarf twig Anolis. Herpetol. Monogr. 12:192-236.
    • (1998) Herpetol. Monogr. , vol.12 , pp. 192-236
    • Poe, S.1
  • 35
    • 0002520485 scopus 로고
    • A phylogenetic and allozyme approach to understanding rarity in three "green ash" eucalypts (Myrtaceae)
    • PROBER, S. M., J. C. BELL, AND G. MORAN. 1990. A phylogenetic and allozyme approach to understanding rarity in three "green ash" eucalypts (Myrtaceae). Plant Syst. Evol. 172:99-118.
    • (1990) Plant Syst. Evol. , vol.172 , pp. 99-118
    • Prober, S.M.1    Bell, J.C.2    Moran, G.3
  • 36
    • 0001995326 scopus 로고    scopus 로고
    • Evolution of the lizard family Phrynosomatidae as inferred from diverse types of data
    • REEDER, T. W., AND J. J. WIENS. 1996. Evolution of the lizard family Phrynosomatidae as inferred from diverse types of data. Herpetol. Monogr. 10:43-84.
    • (1996) Herpetol. Monogr. , vol.10 , pp. 43-84
    • Reeder, T.W.1    Wiens, J.J.2
  • 37
    • 0000642024 scopus 로고
    • A new coding procedure for morphometric data with an example from periodical cicada wing veins
    • (J. Felsenstein, ed.). Springer-Verlag, Berlin
    • SIMON, C. 1983. A new coding procedure for morphometric data with an example from periodical cicada wing veins. Pages 378-382 in Numerical taxonomy (J. Felsenstein, ed.). Springer-Verlag, Berlin.
    • (1983) Numerical Taxonomy , pp. 378-382
    • Simon, C.1
  • 38
    • 0000790778 scopus 로고
    • Character states, morphological variation, and phylogenetic analysis: A review
    • STEVENS, P. F. 1991. Character states, morphological variation, and phylogenetic analysis: A review. Syst. Bot. 16:553-583.
    • (1991) Syst. Bot. , vol.16 , pp. 553-583
    • Stevens, P.F.1
  • 39
    • 0030335884 scopus 로고    scopus 로고
    • Finite mixture coding: A new approach to coding continuous characters
    • STRAIT, D. S., M. A. MONIZ, AND P. T. STRAIT. 1996. Finite mixture coding: A new approach to coding continuous characters. Syst. Biol. 45:67-78.
    • (1996) Syst. Biol. , vol.45 , pp. 67-78
    • Strait, D.S.1    Moniz, M.A.2    Strait, P.T.3
  • 40
    • 0032148616 scopus 로고    scopus 로고
    • Why morphometrics is not special: Coding qualitative data for phylogenetic analysis
    • SWIDERSKI, D. W., M. L. ZELDITCH, AND W. L. FINK. 1998. Why morphometrics is not special: Coding qualitative data for phylogenetic analysis. Syst. Biol. 47:508-519.
    • (1998) Syst. Biol. , vol.47 , pp. 508-519
    • Swiderski, D.W.1    Zelditch, M.L.2    Fink, W.L.3
  • 43
    • 0000319250 scopus 로고
    • The holy grail of the perfect character: The cladistic treatment of morphometric data
    • THIELE, K. 1993. The Holy Grail of the perfect character: The cladistic treatment of morphometric data. Cladistics 9:275-304.
    • (1993) Cladistics , vol.9 , pp. 275-304
    • Thiele, K.1
  • 44
    • 0021541580 scopus 로고
    • Coding morphometric characters for constructing distance Wagner networks
    • THORPE, R. S. 1984. Coding morphometric characters for constructing distance Wagner networks. Evolution 38:244-355.
    • (1984) Evolution , vol.38 , pp. 244-355
    • Thorpe, R.S.1
  • 45
    • 0001902648 scopus 로고
    • Phylogenetic relationships of central and South American pitvipers of the genus Bothrops (sensu lato): Cladistic analyses of biochemical and anatomical characters
    • (J. A. Campbell and E. D. Brodie, Jr., eds.). Selva, Tyler, Texas
    • WERMAN, S. D. 1992. Phylogenetic relationships of Central and South American pitvipers of the genus Bothrops (sensu lato): Cladistic analyses of biochemical and anatomical characters. Pages 21-40 in Biology of the pitvipers (J. A. Campbell and E. D. Brodie, Jr., eds.). Selva, Tyler, Texas.
    • (1992) Biology of the Pitvipers , pp. 21-40
    • Werman, S.D.1
  • 46
    • 0001021394 scopus 로고
    • Phylogenetic systematics of the tree lizards (genus Urosaurus)
    • WIENS, J. J. 1993. Phylogenetic systematics of the tree lizards (genus Urosaurus). Herpetologica 49:399-420.
    • (1993) Herpetologica , vol.49 , pp. 399-420
    • Wiens, J.J.1
  • 47
    • 11944270728 scopus 로고
    • Polymorphic characters in phylogenetic systematics
    • WIENS, J. J. 1995. Polymorphic characters in phylogenetic systematics. Syst. Biol. 44:482-500.
    • (1995) Syst. Biol. , vol.44 , pp. 482-500
    • Wiens, J.J.1
  • 48
    • 0032351679 scopus 로고    scopus 로고
    • Testing phylogenetic methods with tree congruence: Phylogenetic analysis of polymorphic morphological characters in phrynosomatid lizards
    • WIENS, J. J. 1998. Testing phylogenetic methods with tree congruence: Phylogenetic analysis of polymorphic morphological characters in phrynosomatid lizards. Syst. Biol. 47:427-444.
    • (1998) Syst. Biol. , vol.47 , pp. 427-444
    • Wiens, J.J.1
  • 49
    • 0345908689 scopus 로고    scopus 로고
    • Phylogeny of the spiny lizards (Sceloporus) based on molecular and morphological evidence
    • WIENS, J. J., AND T. W. REEDER. 1997. Phylogeny of the spiny lizards (Sceloporus) based on molecular and morphological evidence. Herpetol. Monogr. 11:1-101.
    • (1997) Herpetol. Monogr. , vol.11 , pp. 1-101
    • Wiens, J.J.1    Reeder, T.W.2
  • 50
    • 0031484624 scopus 로고    scopus 로고
    • Accuracy of phylogenetic analysis including and excluding polymorphic characters
    • WIENS, J. J., AND M. R. SERVEDIO. 1997.Accuracy of phylogenetic analysis including and excluding polymorphic characters. Syst. Biol. 46:332-345.
    • (1997) Syst. Biol. , vol.46 , pp. 332-345
    • Wiens, J.J.1    Servedio, M.R.2
  • 51
    • 0032095587 scopus 로고    scopus 로고
    • Phylogenetic analysis and intraspecific variation: Performance of parsimony, likelihood, and distance methods
    • WIENS, J. J., AND M. R. SERVEDIO. 1998. Phylogenetic analysis and intraspecific variation: Performance of parsimony, likelihood, and distance methods. Syst. Biol. 47:228-253.
    • (1998) Syst. Biol. , vol.47 , pp. 228-253
    • Wiens, J.J.1    Servedio, M.R.2


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