Results of a collaborative study of the EDNAP group regarding the reproducibility and robustness of the Y-chromosome STRs DYS19, DYS389 I and II, DYS390 and DYS393 in a PCR pentaplex format

Forensic Science International

Volumn 119, Issue 1, 2001, Pages 28-41

  Carracedo, Angel ^a   Beckmann, Anna ^b   Bengs, Auli ^b   Brinkmann, Bernd ^b   Caglia, Alessandra ^b   Capelli, Cristian ^b   Gill, Peter ^b   Gusmão, Leonor ^b   Hagelberg, Charlotte ^b   Hohoff, Garsten ^b   Hoste, Bernadette ^b   Kihlgren, Anne ^b   Kloosterman, Ate ^b   Dupuy, Berit Myhre ^b   Morling, Niels ^b   O'Donnell, Geraldine ^b   Parson, Walther ^b   Phillips, Chris ^b   Pouwels, Mark ^b   Scheithauer, Richard ^b   Schmitter, Hermann ^b   Schneider, Peter M ^b   Schumm, James ^b   Skitsa, Ioulia ^b   Stradmann Bellinghausen, Beate ^b   Stuart, Michelle ^b   Court, Denise Syndercombe ^b   Vide, Conceiçao ^b   more..

^a UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

^b NONE

Author keywords

EDNAP; PCR multiplex; Population databases; Y chromosome STRs

Indexed keywords

ALLELE; ARTICLE; DNA DETERMINATION; DNA POLYMORPHISM; EUROPE; GENE LOCUS; HAPLOTYPE; POLYMERASE CHAIN REACTION; POPULATION GENETICS; PRIORITY JOURNAL; REPRODUCIBILITY; TANDEM REPEAT; Y CHROMOSOME;

EID: 0035371805     PISSN: 03790738     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0379-0738(00)00395-9     Document Type: Article

References (26)

1. P. Malaspina, F. Persichetti, A. Novelletto, C. Iodice, L. Terrenato, J. Wolfe, M. Ferraro, G. Prantera, The human Y chromosome shows a low level of DNA polymorphism, Ann. Hum. Genet. 54 (1990) 297-305.
2. M.A. Jobling, A. Pandya, C. Tyler-Smith, The Y chromosome in forensic analysis and paternity testing, Int. J. Legal Med. 110 (1997) 118-124.
3. M. Prinz, K. Boll, H. Baum, B. Shaler, Multiplexing of Y chromosome specific STRs and performance for mixed samples, Forensic Sci. Int. 85 (1997) 209-218.
4. K. Honda, L. Roewer, P. de Knijff, Male DNA typing from 25-year-old vaginal swabs using Y chromosomal STR polymorphisms in a retrial request case, J. Forensic Sci. 44 (1999) 868-872.
5. L. Gusmão, M. Brión, A. González-Neira, MV. Lareu, A. Carracedo, Y Chromosome specific polymorphisms in forensic analysis, Legal Med. 1 (1999) 55-60.
6. L. Roewer, J. Arnemann, N.K. Spurr, K.H. Grzeschik, J.T. Epplen, Simple repeat sequences on the human Y chromosome are equally polymorphic as their autosomal counterparts, Hum. Genet. 89 (1992) 389-394.
7. F.R. Santos, S.D. Pena, J.T. Epplen, Genetic and populational study of a Y-linked tetranucleotide repeat DNA polymorphism with a simple non-isotopic technique, Hum. Genet. 90 (1993) 655-656.
8. M. Kayser, A. Cagliá, D. Corach, N. Fretwell, C. Gehrig, G. Graziosi, F. Heidorn, S. Herrmann, B. Herzog, M. Hidding, K. Honda, M. Jobling, M. Krawzczak, K. Leim, S. Meuser, E. Meyer, W. Oesterreich, A. Pandya, W. Parson, G. Penacino, A. Perez-Lezaun, A. Piccini, M. Prinz, C. Schmitt, P.M. Schneider, R. Szibor, J. Teifel-Greding, G. Weichhold, P. de Knijff, L. Roewer, Evaluation of Y-chromosomal STRs: a multicenter study, Int. J. Legal Med. 110 (1997) 125-133.
9. P. de Knijff, M. Kayser, A. Caglià, D. Corach, N. Fretwell, C. Gehrig, G. Graziosi, F. Heidorn, S. Herrmann, B. Herzog, M. Hidding, K. Honda, M. Jobling, M. Krawczak, K. Leim, S. Meuser, E. Meyer, W. Oesterreich, A. Pandya, W. Parson, G. Penacino, A. Perez-Lezaun, A. Piccini, M. Prinz, C. Schmitt, P.M. Schneider, R. Szibor, J. Teifel-Greding, G. Weichhold, L. Roewer, Chromosome Y microsatellites: population genetics and evolutionary aspects, Int. J. Legal Med. 110 (1997) 134-149.
10. M. Kayser, P. De Knijff, P. Dieltjes, M. Krawczak, M. Nagy, T. Zerjal, A. Pandya, C. Tyler-Smith, L. Roewer, Applications of microsatellite-based Y chromosome haplotyping, Electrophoresis 18 (1997) 1602-1607.
11. A. Peréz-Lezaun, F. Calafell, M. Seielstad, E. Mateu, D. Comas, E. Bosch, J. Bertranpetit, Population genetics of Y-Chromosome Short Tandem Repeats in humans, J. Mol. E 45 (1997) 265-270.
12. L. Gusmao, A. González-Neira, P. Sánchez-Diz, M.V. Lareu, A. Carracedo, Alternative primers for DYS391 typing: advantages of their application to forensic genetics, Forensic Sci. Int. 112 (2000) 49-57.
13. B. Dupuy, T. Gedde-Dahl Jr., B. Olaisen. DXYS267: DYS393 and its X chromosome counterpart, Forensic Sci. Int. 112 (2000) 111-121.
14. L. Gusmão, A. González-Neira, C. Pestoni, M.. Brión, M.V. Lareu, A. Carracedo, Robustness of the Y STRs DYS19, DYS389 I and II, DYS390 and DYS393: optimization of a PCR pentaplex, Forensic Sci. Int. 106 (1999) 163-172.
15. P.M. Schneider, E. D'Aloja, B.M. Dupuy, B. Eriksen, A. Janblad, A.D. Kloosterman, A. Kratzer, M.V. Lareu, H. Pfitzinger, S. Rand, R. Scheithauer, H. Schmitter, I. Skitsa, D. Syndercombe-Court, M.C. Vide, Results of a collaborative study regarding the standardization of the Y-linked STR system DYS385 by the European DNA Profiling (EDNAP) Group, Forensic Sci. Int. 102 (1999) 159-165.
16. C. Pestoni, M.L. Cal, M.V. Lareu, M.S. Rodríguez-Calvo, A. Carracedo, A Y chromosome STR haplotypes: genetic and sequencing data of the Galician population (NW Spain), Int. J. Legal Med. 112 (1998) 15-21.
17. B. Rolf, E. Meyer, B. Brinkmann, P. de Knijff, Polymorphism at the tetranucelotide repeat locus DYS389 in 10 populations reveals strong geographic clustering, Eur. J. Hum. Genet. 6 (1998) 583-588.
18. L. Roewer, M. Kayser, P. Dieltjes, M. Nagy, E. Bakker, M. Krawczak, P. de Knijff, Analysis of molecular variance AMOVA of Y-chromosome specific microsatellites in two closely related human populations, Hum. Mol. Genet. 7 (1996) 1029-1031.
19. A. González-Neira, L. Gusmão, M. Brión, M.V. Lareu, A. Amorim, A. Carracedo, Distribution of Y-chromosome STR defined haplotypes in Iberia, Forensic Sci. Int. 1 (2000) 112-121.
20. M. Nei, Molecular Evolutionary Genetics, Columbia University Press, New York, USA, 1987.
21. S. Schneider, J.M. Kueffer, D. Roessli, L. Excoffier, Arlequin ver. 1.1, University of Geneva, 1997.
22. B.S. Weir, C.C. Cokerham, estimating F-statistics for the analysis of population structure, Evolution 38 (1984) 1358-1370.
23. J. Felsenstein, PHYLIP: Phylogeny Inference Package (Version 3.2), Cladistics 5 (1989) 164-166.
24. J. Gómez, A. Carracedo, The 1998-1999 collaborative exercises and proficiency testing program on DNA typing of the Spanish and Portuguese working group of the international society for forensic genetics (GEP-ISFG), Forensic Sci. Int. 114 (2000) 21-30.
25. A. Salas, M.V. Lareu, D. Comas, J. Bertranpetit, A. Carracedo, mt DNA analysis of the Galician population: a genetic edge of European variation, Eur. J. Hum. Gen. 6 (1998) 365-375.
26. L. Roewer, M. Kayser, P. De Knijff, K. Anslinger, A. Caglià, D. Corach, S. Füredi, G. Geserick, L. Henke, M. Hidding, H.J. Kärgel, R. Lessig, M. Nagy, V.L. Pascali, W. Parson, B. Rolf, C. Schmitt, R. Szibor, T. Teifel-Greding, A new method for the evaluation of matches in non-recombinant genomes: application to Y-chromosomal short tandem repeat (STR) haplotypes in European males, Forensic Sci. Int. 114 (2000) 31-43.