Physical and radiation hybrid mapping of canine chromosome 12, in a region corresponding to human chromosome 6p12-q12

Genomics

Volumn 73, Issue 3, 2001, Pages 299-315

  Li, Robin ^a   Faraco, Juliette H ^a   Lin, Ling ^a   Lin, Xiaoyan ^a   Hinton, Linda ^a   Rogers, William ^a   Lowe, Jennifer K ^b,c   Ostrander, Elaine A ^c   Mignot, Emmanuel ^a  

^a Stanford California and Cofounder   (United States)

^b UNIVERSITY OF WASHINGTON   (United States)

^c Fred Hutchinson Cancer Research Center   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG; HORMONE RECEPTOR; MICROSATELLITE DNA; OREXIN 2 RECEPTOR; PROCOLLAGEN; UNCLASSIFIED DRUG;

ARTICLE; AUTOSOMAL RECESSIVE DISORDER; BACTERIAL ARTIFICIAL CHROMOSOME; CHROMOSOME 12; CHROMOSOME 6P; CHROMOSOME MAP; DOG; EXPRESSED SEQUENCE TAG; GENE MAPPING; MOLECULAR CLONING; NARCOLEPSY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

EID: 0035337213     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.2000.6487     Document Type: Article

References (43)

1. Acland G. M., Ray K., Mellersh C. S., Gu W., Langston A. A., Rine J., Ostrander E. A., Aguirre G. D. Linkage analysis and comparative mapping of canine progressive rod-cone degeneration (prcd) establishes potential locus homology with retinitis pigmentosa (RP17) in humans. Proc. Natl. Acad. Sci. USA. 95:1998;3048-3053.
2. Acland G. M., Ray K., Mellersh C. S., Langston A. A., Rine J., Ostrander E. A., Aguirre G. D. A novel retinal degeneration locus identified by linkage and comparative mapping of canine early retinal degeneration. Genomics. 59:1999;134-142.
3. Breen M., Thomas R., Binns M. M., Carter N. P., Langford C. F. Reciprocal chromosome painting reveals detailed regions of conserved synteny between the karyotypes of the domestic dog (Canis familiaris) and human. Genomics. 61:1999;145-155.
4. Cederberg R., Nishino S., Dement W. C., Mignot E. Breeding history of the Stanford colony of narcoleptic dogs. Vet. Rec. 142:1998;31-36.
5. Francisco L. V., Langston A. A., Mellersh C. S., Neal C. L., Ostrander E. A. A class of highly polymorphic tetranucleotide repeats for canine genetic mapping. Mamm. Genome. 7:1996;359-362.
6. Galibert F., Andre C., Cheron A., Chuat J. C., Hitte C., Jiang Z., Jouquand S. The importance of the canine model in medical genetics. Bull. Acad. Natl. Med. 182:1998;811-821.
7. Green E. D., Green P. Sequence-tagged site (STS) content mapping of human chromosomes: Theoretical considerations and early experiences. PCR Methods Appl. 2:1991;77-90.
8. Hungs M., Fan J., Lin L., Lin X., Grigoriadis D., Maki R. A., Mignot E. Identification and functional analysis of mutations in the hypocretin (orexin) genes of narcoleptic canines. Genome Res. 11:2001;531-539.
9. Husz S., Kiss M., Molnar K., Marczinovits I., Molnar J., Toth G. K., Dobozy A. Development of a system for detection of circulating antibodies against hemidesmosomal proteins in patients with bullous pemphigoid. Arch. Dermatol. Res. 292:2000;217-224.
10. Iwasaki T., Olivry T., Lapiere J. C., Chan L. S., Peavey C., Liu Y. Y., Jones J. C., Ihrke P. J., Woodley D. T. Canine bullous pemphigoid (BP): Identification of the 180-kd canine antigen by circulating autoantibodies. Vet. Pathol. 32:1995;387-393.
11. Jonasdottir T. J., Mellersh C. S., Moe L., Heggebo R., Gamlem H., Ostrander E. A., Lingaas F. Genetic mapping of a naturally occurring hereditary renal cancer syndrome in dogs. Proc. Natl. Acad. Sci. USA. 97:2000;4132-4137.
12. Li R., Mignot E., Faraco J., Kadotani H., Cantanese J., Zhao B., Lin X., Hinton L., Ostrander E. A., Patterson D. F., de Jong P. J. Construction and characterization of an eightfold redundant dog genomic bacterial artificial chromosome library. Genomics. 58:1999;9-17.
13. Lin L., Jin L., Kimura A., Carrington M., Mignot E. DQ microsatellite association studies in three ethnic groups. Tissue Antigens. 50:1997;507-520.
14. Lin L., Faraco J., Li R., Kadotani H., Rogers W., Lin X., Qiu X., de Jong P. J., Nishino S., Mignot E. The sleep disorder canine narcolepsy is caused by a mutation in the hypocretin (orexin) receptor 2 gene. Cell. 98:1999;365-376.
15. Lingaas F., Aarskaug T., Sletten M., Bjerkas I., Grimholt U., Moe L., Juneja R. K. Genetic markers linked to neuronal ceroid lipofuscinosis in English setter dogs. Anim. Genet. 29:1998;371-376.
16. Lowrey P. L., Shimomura K., Antoch M. P., Yamazaki S., Zemenides P. D., Ralph M. R., Menaker M., Takahashi J. S. Positional syntenic cloning and functional characterization of the mammalian circadian mutation tau. Science. 288:2000;483-492.
17. Maniatis T., Fritsch E. F., Sambrook J. Molecular Cloning: A Laboratory Manual. 1982;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
18. Matise T. C., Perlin M., Chakravarti A. Automated construction of genetic linkage maps using an expert system (Multimap): A human genome linkage map. Nat. Genet. 6:1994;384-390.
19. Mellersh C. S., Langston A. A., Acland G. M., Fleming M. A., Ray K., Wiegand N. A., Francisco L. V. A linkage map of the canine genome. Genomics. 46:1997;326-336.
20. Mellersh C. S., Hitte C., Richman M., Vignaux F., Priat C., Jouquand S., Werner P., André C., DeRose S., Patterson D. F., Ostrander E. A., Galibert F. An integrated linkage-radiation hybrid map of the canine genome. Mamm. Genome. 11:2000;120-130.
21. Mignot E., Dement W. C. Narcolepsy in animals and man. Equine Vet. J. 6:1993;476-477.
22. Mignot E., Bell R. A., Rattazzi C., Lovett M., Grumet F. C., Dement W. C. An immunoglobulin switchlike sequence is linked with canine narcolepsy. Sleep. 17:1994;S68-S76.
23. Neff M. W., Broman K. W., Mellersh C. S., Ray K., Acland G. M., Aguirre G. D., Ziegle J. S. A second-generation genetic linkage map of the domestic dog, Canis familiaris. Genetics. 151:1999;803-820.
24. Nishino S., Ripley B., Overeem S., Lammers G. J., Mignot E. Hypocretin (orexin) deficiency in human narcolepsy. Lancet. 355:2000;39-40.
25. Ostrander E. A., Galibert F., Patterson D. F. Canine genetics comes of age. Trends Genet. 16:2000;117-124.
26. Ostrander E., Kruglyak L. Mapping disease loci in dogs by linkage disequilibrium. Genome Res. 10:2000;1271-1274.
27. Patterson D. F., Haskins M. E., Jezyk P. F. Models of human genetic disease in domestic animals. Adv. Hum. Genet. 12:1982;263-339.
28. Peyron C., Faraco J., Rogers W., Ripley B., Overeem S., Charnay Y., Nevsimalova S., Aldrich M., Reynolds D., Albin R., Li R., Hungs M., Pedrazzoli M., Padigaru M., Kucherlapati M., Fan J., Maki R., Lammers G. J., Bouras C., Kucherlapati R., Nishino S., Mignot E. A mutation in a case of early onset narcolepsy and a generalized absence of hypocretin peptides in human narcoleptic brains. Nat. Med. 6:2000;991-997.
29. Priat C., Hitte C., Vignaux F., Renier C., Jiang Z., Jouquand S., Cheron A., Andre C., Galibert F. A whole-genome radiation hybrid map of the dog genome. Genomics. 54:1998;361-378.
30. Ralph M. R., Menaker M. A mutation of the circadian system in golden hamsters. Science. 241:1988;I225-I227.
31. Schibler L., Cribiu E. P., Oustry-Vaiman A., Furet J. P., Vaiman D. Fine mapping suggests that the goat polled intersex syndrome and the human blepharophimosis ptosis epicanthus syndrome map to a 100-kb homologous region. Genome Res. 10:2000;311-318.
32. Thannickal T. C., Moore R. Y., Nienhuis R., Ramanathan L., Gulyani S., Alrich M., Comford M., Siegel J. M. Reduced number of hypocretin neurons in human narcolepsy. Neuron. 27:2000;469-474.
33. Troutman C. M. Dog owners and their use of veterinary services. J. Am. Vet. Med. Assoc. 193:1988;1056-1058.
34. Van de Sluis B. J., Breen M., Nanji M., van Wolferen M., de Jong P., Binns M. M., Pearson P. L., Kuipers J., Rothuizen J., Cox D. W., Wijmenga C., van Oost B. A. Genetic mapping of the copper toxicosis locus in Bedlington terriers to dog chromosome 10, in a region syntenic to human chromosome region 2p13-p16. Hum. Mol. Genet. 8:1999;501-507.
35. Van de Sluis B., Kole S., van Wolferen M., Holmes N. G., Pearson P. L., Rothuizen J., van Oost B. A., Wijmenga C. Refined genetic and comparative physical mapping of the canine copper toxicosis locus. Mamm. Genome. 11:2000;455-400.
36. Vignaux F., Hitte C., Priat C., Chuat J. C., Andre C., Galibert F. Construction and optimization of a dog whole-genome radiation hybrid panel. Mamm. Genome. 10:1999;888-894.
37. Wagner J. L., Burnett R. C., Storb R. Organization of the canine major histocompatibility complex: Current perspectives. J. Hered. 90:1999;35-38.
38. Werner P., Mellersh C. S., Raducha M. G., DeRose S., Acland G. M., Prociuk U., Wiegand N., Aguirre G. D., Henthorn P. S., Patterson D. F., Ostrander E. A. Anchoring of canine linkage groups with chromosome-specific markers. Mamm. Genome. 10:1999;814-823.
39. Yang F., O'Brien P. C., Milne B. S., Graphodatsky A. S., Solanky N., Trifonov V., Rens W., Sargan D., Ferguson-Smith M. A. A complete comparative chromosome map for the dog, red fox, and human and its integration with canine genetic maps. Genomics. 62:1999a;189-202.
40. Yang Y., Bauer C., Strasser G., Wollman R., Julien J. P., Fuchs E. Integrators of the cytoskeleton that stabilize microtubules. Cell. 98:1999b;229-238.
41. Yang F., Graphodatsky A. S., O'Brien P. C., Colabella A., Solanky N., Squire M., Sargan D. R., Ferguson-Smith M. A. Reciprocal chromosome painting illuminates the history of genome evolution of the domestic cat, dog and human. Chromosome Res. 8:2000;393-404.
42. Yuzbasiyan-Gurkan V., Blanton S. H., Cao V., Ferguson P., Li J., Venta P. J., Brewer G. J. Linkage of a microsatellite marker of the canine copper toxicosis locus in Bedlington terriers. Am. J. Vet. Res. 58:1997;23-27.
43. Zeiss C. J., Ray K., Acland G. M., Aguirre G. D. Mapping of X-linked progressive retinal atrophy (XLPRA), the canine homolog of retinitis pigmentosa 3 (RP3). Hum. Mol. Genet. 9:2000;531-537.