Phylogeographic structure of the Formosan wood mouse, Apodemus semotus Thomas

Zoological Studies

Volumn 40, Issue 2, 2001, Pages 91-102

  Hsu, Fu Hsiung ^a,c   Lin, Fei Jann ^b   Lin, Yao Sung ^c  

^a ENDEMIC SPECIES RESEARCH INSTITUTE   (Taiwan)

^b ACADEMIA SINICA   (Taiwan)

^c NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

Apodemus semotus; mtDNA; Phylogeographic structure; RFLP

Indexed keywords

EID: 0035315483     PISSN: 10215506     EISSN: 1810522X     Source Type: Journal    
DOI: None     Document Type: Article

References (72)

1. Avise JC. 1989. Gene trees and organismal histories: a phylogenetic approach to population biology. Evolution 43: 1192-1208.
2. Avise JC. 1992. Molecular population structure and the biogeographic history of a regional fauna: a case history with lessons for conservation biology. Oikos 63: 62-76.
3. Avise JC. 1994. Molecular markers, natural history and evolution. New York: Chapman and Hall.
4. Avise JC, RT Alisauskas, WS Nelson, CD Ankney. 1992. Matriarchal population genetic structure in an avian species with female natal philopatry. Evolution 46: 1084-1096.
5. Avise JC, J Arnold, RM Ball, E Bermingham, T Lamb, JE Neigel, CA Reeb, NC Saunders. 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annu. Rev. Ecol. Syst. 18: 489-522.
6. Avise JC, RM Ball. 1990. Principles of genealogical concordance in species concepts and biological taxonomy. Oxford Surv. Evol. Biol. 7: 45-67.
7. Avise JC, RM Ball, J Arnold. 1988. Current versus historical population sizes in veterbrate species with high gene flow: a comparison based on mitochondrial DNA lineages and inbreeding theory for neutral mutations. Mol. Biol. Evol. 5: 331-344.
8. Avise JC, RA Lansman, RO Shade. 1979. The use of restriction endonucleases to measure mitochondrial DNA sequence relatedness in natural populations. I. Population structure and evolution in the genus Peromyscus. Genetics 92: 279-295.
9. Avise JC, JE Neigel, J Arnold. 1984. Demographic influences on mitochondrial DNA lineage survivorship in animal populations. J. Mol. Evol. 20: 99-105.
10. Ball RM Jr, S Freeman, FC James, E Bermingham. 1988. Phylogeographic population structure of red-wing blackbirds assessed by mitochondrial DNA. Evolution 85: 1558-1562.
11. Chang HW, KC Liu. 1997. Biogeography and molecular phylogeny of the Swinhoe's tree lizard. In YS Lin, ed. Proceedings of the symposium on the conservation and management of wildlife. Taipei: Council of Agriculture, pp. 75-94. (in Chinese)
12. Chen CS. 1993. A geography of Taiwan. Vol. I, 2nd ed. Taipei: Nantien Books Co. 368 pp. (in Chinese)
13. Crandall KA, AR Templeton. 1993. Empirical tests of some predictions from coalescent theory with applications in intraspecific phylogeny reconstruction. Genetics 134: 959-969.
14. Dowling TE, C Moritz, JD Palmer. 1990. Nucleic acids II: Restriction site analysis. In DM Hillis, C Moritz, eds. Molecular systematics. Sunderland, MA: Sinauer, pp. 250-317.
15. Felsenstein J. 1993. PHYLIP (Phylogeny Inference Package). Seattle: Dept. of Genetics, Univ. of Washington.
16. Harpending HC, ST Sherry, AR Rogers, M Stoneking. 1993. The genetic structure of ancient human populations. Curr. Anthropol. 34: 483-496.
17. Harrison RG. 1989. Animal mitochondrial DNA as a genetic marker in population and evolutionary biology. TREE 4: 6-11.
18. Hayes JP, RG Harrison. 1992. Variation in mitochondrial DNA and the biogeographic history of woodrats (Neotoma) of the eastern United States. Syst. Biol. 41: 331-344.
19. Hays JD, J Imbrie, NJ Shackleton. 1976. Variations in the earth's orbit: pacemaker of the ice ages. Science 194: 1121-1132.
20. Hillis DM, JP Huelsenbeck. 1992. Signal, noise, and reliability in molecular phylogenetic analysis. J. Hered. 83: 189-195.
21. Hillis DM, C Moritz. 1990. An overview of applications of molecular systematics. In DM Hillis, C Moritz, eds. Molecular systematics. Sunderland, MA: Sinauer, pp. 502-515.
22. Hoelzel AR. 1992. Molecular genetic analysis of populations. New York: Oxford Univ. Press.
23. Holder K, R Montgomerie, VL Friesen. 1999. A test of the glacial refugium hypothesis using patterns of mitochondrial and nuclear DNA sequence variation in rock ptarmigan (Lagopus mutus). Evolution 53: 1936-1950.
24. Hsu FH, FJ Lin, YS Lin. 2000. Phylogeographic variation in mitochondrial DNA of Formosan white-bellied rat Niviventer culturatus. Zool. Stud. 39: 38-46.
25. Huang BM. 1986. Annual reproductive cycle of the Formosan wood mouse, Apodemus semotus. Master's thesis, Tunghai Univ., Taiwan. (in Chinese)
26. Jaarola M, H Tegelstrom. 1995. Colonization history of the north European field voles (Microtus agrestis) revealed by mitochondrial DNA. Mol. Ecol. 4: 299-310.
27. Jaarola M, H Tegelstrom. 1996. Mitochondrial DNA variation in the field vole (Microtus agrestis): regional population structure and colonization history. Evolution 50: 2073-2085.
28. Kano T. 1940. Zoogeographic studies of the Tsugitaka mountains of Formosa. Tokyo: Institute for Ethnogeographical Researches, pp. 1-145.
29. Kumar S, K Tamura, M Nei. 1993. MEGA: molecular evolution analysis, version 1.02. Pennsylvania: Institute of Molecular Evolutionary Genetics, Pennsylvania State Univ.
30. Kuroda N. 1952. Mammalogical history of Formosa with zoogeography and bioliography. Quart. J. Taiwan Mus. 4: 262-304.
31. Lai JS. 1996. Systematics of Taiwanese Hynobius species. Master's thesis, National Taiwan Normal Univ., Taiwan. (in Chinese)
32. Lamb T, JC Avise, JW Gibbons. 1989. Phylogeographic patterns in mitochondrial DNA of the desert tortoise (Xerobates agassizi), and evolutionary relationships among the North American tortoises. Evolution 43: 76-87.
33. Lin CC. 1963. Quarternary in Taiwan: reports on historiographical studies of Taiwan. Taiwan Wen Hsien 14: 1-92. (in Chinese)
34. Lin CC. 1966. An outline of Taiwan's Quaternary geohistory with a special distribution of the relation between natural history and cultural history in Taiwan. Bull. Dep. Archaeol. Anthropol. 28: 7-44. (in Chinese)
35. Lin IJ. 1985. Zoogeographical studies of mammals in Taiwan. In YS Lin, ed. Thesis of wildlife conservation. Taipei: Dept. of Zoology, National Taiwan Univ., pp. 1-9. (in Chinese)
36. Lin LK. 1982. Mammals of Taiwan. Master's thesis, Tunghai Univ., Taiwan. (in Chinese)
37. Lin LK, PS Alexander, MJ Yu. 1987. A survey of the small mammals of Mt. Ali recreation area. Tunghai J. 28: 669-682. (in Chinese with English abstract)
38. Lin LK, S Shiraishi. 1992a. Reproductive biology of the Formosan wood mouse, Apodemus semotus. J. Fac. Agr. Kyushu U. 36: 183-200.
39. Lin LK, S Shiraishi. 1992b. Demography of the Formosan wood mouse, Apodemus semotus. J. Fac. Agr. Kyushu U. 36: 245-266.
40. Lin LK, S Shiraishi. 1992c. Home range and microhabitat utilization in the Formosan wood mouse, Apodemus semotus. J. Fac. Agr. Kyushu U. 37: 13-27.
41. McElroy D, P Moran, E Bermingham, I Kornfield. 1991. The restriction enzyme analysis package, version 4.0. Orono, ME: Dept. of Zoology, Univ. of Maine. 41 pp.
42. Moritz C, TE Dowling, WM Brown. 1987. Evolution of animal mitochondrial DNA: relevance for population biology and systematics. Annu. Rev. Ecol. Syst. 18: 269-292.
43. Nachman MW, SN Boyer, JB Searle, CF Aquadro. 1994. Mitochondrial DNA variation and the evolution of Robertsonian chromosomal races of house mice, Mus domesticus. Genetics 136: 1105-1120.
44. Nei M. 1987. Molecular evolutionary genetics. New York: Columbia Univ. Press.
45. Nei M, WH Li. 1979. Mathematical model for studying genetic variation in terms of restriction endonuclease. Proc. Natl. Acad. Sci. USA 76: 5269-5273.
46. Nei M, JC Miller. 1990. A simple method for estimating the average number of substitutions within and between populations from restriction data. Genetics 125: 873-879.
47. Nei M, F Tajima. 1981. DNA polymorphism detectable by restriction endonucleases. Genetics 97: 145-163.
48. Neigel JE, JC Avise. 1993. Application of a random walk model to geographic distributions of animal mitochondrial DNA variation. Genetics 135: 1209-1220.
49. Osentoski MF, T Lamb. 1995. Intraspecific phylogeography of the gopher tortoise, Gopherus polyphemus: RFLP analysis of amplified mtDNA segments. Mol. Ecol. 4: 709-718.
50. Patton JL, MNF Da Silva, JR Malcolm. 1994. Gene genealogy and differentiation among arboreal spiny rats (Rodentia: Echimyidae) of the Amazon basin: a test of the riverine barrier hypothesis. Evolution 48: 1314-1323.
51. Phillips CA. 1994. Geographic distribution of mitochondrial DNA variants and the historical biogeography of the spotted salamander, Ambystoma maculatum. Evolution 48: 597-607.
52. Prager EM, RD Sage, U Gyllensten, WK Thomas, R Hubner, CS Jones, L Noble, JB Searle, AC Wilson. 1993. Mitochondrial DNA sequence diversity and the colonization of Scandinavia by house mice from East Holstein. Biol. J. Linn. Soc. 50: 85-122.
53. Riddle BR, RL Honeycutt, PL Lee. 1993. Mitochondrial DNA phylogeography in northern grasshopper mice (Onychomys leucogaster) - the influence of Quaternary climatic oscillations on population dispersion and divergence. Mol. Ecol. 2: 183-193.
54. 2 and the problem of small sample sizes. Mol. Biol. Evol. 6: 539-545.
55. Saitou N, M Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
56. She JX, F Bonhomme, P Boursot, L Thaler, F Catzeflis. 1990. Molecular phylogenies in the genus Mus: comparative analysis of electrophoretic, scnDNA hybridization, and mtDNA RFLP data. Biol. J. Linn. Soc. 41: 83-103.
57. Sneath PHA, RR Sokal. 1973. Numerical taxonomy. San Francisco: WH Freeman.
58. Swofford DL. 1993. PAUP: phylogenetic analysis using parsimony, version 3.1.1. Champaign, IL: Illinois Natural History Survey.
59. Templeton AR. 1993. The "Eve" hypotheses: a genetic critique and analysis. Am. Anthropol. 95: 51-72.
60. Toda M, M Nishida, M Matsui, KY Lue, H Ota. 1998. Genetic variation in the Indian rice frog, Rana limnocharis (Amphibia: Anura) in Taiwan, as revealed by allozyme data. Herpetologica 54: 73-82.
61. Toda M, M Nishida, M Matsui, GF Wu, H Ota. 1997. Allozyme variation among East Asian populations of the Indian rice frog, Rana limnocharis (Amphibia: Anura). Biochem. Syst. Ecol. 25: 143-159.
62. Walker D, VJ Burke, I Barak, JC Avise. 1995. A comparison of mtDNA restriction site vs. control region sequence in phylogeographic assessment of the musk turtle (Sternotherus minor). Mol. Ecol. 4: 365-373.
63. Walpole DK, SK Davis, IF Greenbaum. 1997. Variation in mitochondrial DNA in populations of Peromyscus eremicus from the Chihuahuan and Sonoran deserts. J. Mammal. 78: 397-404.
64. Wang HY, MP Tsai, MJ Yu, SC Lee. 1999. Influence of glaciation on divergence patterns of the endemic minnow, Zacco pachycephalus, in Taiwan. Mol. Ecol. 8: 1879-1888.
65. Williams ST, JAH Benzie. 1997. Indo-West Pacific patterns of genetic differentiation in the high-dispersal starfish, Linckia laevigata. Mol. Ecol. 6: 559-573.
66. Wilson AC, RL Cann, SM Carr, G Matthew, UB Gyllensten, KM Helm-Bychowski, RG Higuchi, SR Palumbi, EM Prager, RD Sage, M Stoneking. 1985. Mitochondrial DNA and two perspectives on evolutionary genetics. Biol. J. Linn. Soc. 26: 275-400.
67. Yang YJ, YS Lin, JL Wu, CF Hui. 1994. Variation in mitochondrial DNA and population structure of the Taipei treefrog Rhacophorus taipeianus in Taiwan. Mol. Ecol. 3: 219-228.
68. Yeh WS. 1997. Phylogeographic structure of Rhacophorus moltrechti. Master's thesis, National Taiwan Univ., Taiwan. (in Chinese)
69. Yu HT. 1992. An elevational transect study of the distribution of small mammals in Taiwan. PhD dissertation, Univ. of California at Berkeley, CA.
70. Yu HT. 1993. Natural history of small mammals of subtropical montane areas in central Taiwan. J. Zool. Lond. 231: 403-422.
71. Yu HT. 1994. Distribution and abundance of small mammals along a subtropical elevational gradient in central Taiwan. J. Zool. Lond. 234: 577-600.
72. Yu HT. 1995. Patterns of diversification and genetic population structure of small mammals in Taiwan. Biol. J. Linn. Soc. 55: 69-89.