Cellular automata for polymer simulation with application to polymer melts and polymer collapse including implications for protein folding

Parallel Computing

Volumn 27, Issue 5, 2001, Pages 613-641

  Ostrovsky, B ^a   Crooks, G ^b   Smith, M A ^c   Bar Yam, Y ^d  

^a SUN MICROSYSTEMS   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c HARVARD UNIVERSITY   (United States)

^d NEW ENGLAND COMPLEX SYSTEMS INSTITUTE   (United States)

Author keywords

Cellular automata; Domain decomposition; Polymer collapse; Polymer melts; Protein folding

Indexed keywords

AUTOMATA THEORY; CELLULAR ARRAYS; COMPUTER ARCHITECTURE; COMPUTER SIMULATION; DECOMPOSITION; PARALLEL ALGORITHMS; PROTEINS; REACTION KINETICS;

CELLULAR AUTOMATA; POLYMER COLLAPSE; POLYMER MELTS;

PARALLEL PROCESSING SYSTEMS;

EID: 0035312680     PISSN: 01678191     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-8191(00)00081-8     Document Type: Article

References (20)

1. Static and dynamic properties of two-dimensional polymer melts
2. Polymer principles in protein structure and stability
3. Mesostructure of polymer collapse and fractal smoothing
4. Thermodynamics of partly folded intermediates in proteins
5. Irreversible polymer collapse in 2 and 3 dimensions
6. Motion of polymer ends in homopolymer and heteropolymer collapse
7. Applications of parallel computing to biological problems
8. Polymer interpenetration in 2D high density melts
9. Massively parallel architectures and polymer simulation
10. Cellular automata simulation of polymers
11. Parallel processing simulation of polymers