Primary structure and phylogenetic analysis of the coat protein of a toyama isolate of tobacco necrosis virus

Bioscience, Biotechnology and Biochemistry

Volumn 65, Issue 3, 2001, Pages 719-724

  Saeki, Kazuhiko ^a   Takahashi, Yasuhiro ^a   Oh Oka, Hirozo ^a   Umeoka, Tatsumi ^a   Oda, Yutaka ^a   Fukuyama, Keiichi ^a  

^a OSAKA UNIVERSITY   (Japan)

Author keywords

Amino acid sequence; Coat protein; Plant virus; Tobacco necrosis virus

Indexed keywords

CARMOVIRUS; NECROVIRUS; NICOTIANA TABACUM; SOBEMOVIRUS; TOMBUSVIRUS; UNIDENTIFIED TOBACCO NECROSIS VIRUS;

CAPSID PROTEIN; COAT PROTEIN, TOBACCO NECROSIS VIRUS (NEBRASKA); PLANT DNA;

AMINO ACID SEQUENCE; ARTICLE; CLASSIFICATION; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT; SEQUENCE HOMOLOGY; TOBACCO; TOMBUSVIRUS; VIRUS CAPSID;

AMINO ACID SEQUENCE; BASE SEQUENCE; CAPSID; CAPSID PROTEINS; DNA, PLANT; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANTS, TOXIC; SEQUENCE HOMOLOGY, AMINO ACID; TOBACCO; TOMBUSVIRIDAE;

EID: 0035288122     PISSN: 09168451     EISSN: None     Source Type: Journal    
DOI: 10.1271/bbb.65.719     Document Type: Article

References (21)

1. Kassanis, B., Tobacco necrosis virus. C.M.I./A.A.B. Description of Plant Viruses, No. 14, Sheet 14 (1970).
2. Smith, K. M. and Bald, J. G., A description of a necrotic virus disease affecting tobacco and other plants. Parasitology, 27, 231-245 (1935).
3. Babos, P. and Kassanis, B., Serological relationships and some properties of tobacco necrosis virus strains. J. Gen. Microbiol., 32, 135-144 (1963).
4. Zhang, L., French, R., and Langenberg, W. G., Molecular cloning and sequencing of the coat protein gene of a Nebraskan isolate of tobacco necrosis virus: the deduced coat protein sequence has only moderate homology with those of strain A and strain D. Arch Virol., 132, 291-305 (1993).
5. Tsukihara, T., Yokota, T., Koyama, T., Fukuyama, K., and Matsubara, H., Symmetry and subunit arrangement of tobacco necrosis virus (TNV). Acta Cryst., B46, 855-860 (1990).
6. Bando, M., Morimoto, Y., Sato, T., Tsukihara, T., Yokota, Y., Fukuyama, K., and Matsubara, H., Crystal structural analysis of tobacco necrosis virus at 5 A resolution. Acta Cryst., D50, 878-883 (1994).
7. Nahata, K., Iwaki, M., and Kusaba, T., Occurrence of tulip necrotic disease by tobacco necrosis virus in Toyama prefecture. Bull. Toyama Agric. Exp., 9, 1-10 (1978).
8. Kassanis, B., A necrotic disease of forced tulips caused by tobacco necrosis viruses. Ann. Appl. Biol., 36, 14-17 (1949).
9. Oda, Y., Saeki, K., Takahashi, Y., Maeda, T., Naitow, H., Tsukihara, T., and Fukuyama, K., Crystal structure of tobacco necrosis virus at 2.25 Å resolution. J. Mol. Biol., 300, 153-69 (2000).
10. Fukuyama, K., Hirota, S., and Tsukihara, T., Crystallization and preliminary X-ray diffraction studies of tobacco necrosis virus. J. Mol. Biol., 196, 961-962 (1987).
11. Crestfield, A. M., Moore, S., and Stein, W. H., The preparation and enzymatic hydrolysis of reduced and S-carboxylmethylated proteins. J. Biol. Chem., 238, 622-627 (1963).
12. Saeki, K., Suetsugu, Y., Yao, Y., Horio, T., Marrs, B. L., and Matsubara, H., Two distinct ferredoxins from Rhodobacter capsulatus: complete amino acid sequences and molecular evolution. J. Biochem., 108, 475-482 (1990).
13. Casper, D. L. D. and Klug, A., Physical principles in the construction of regular viruses. Cold Spring Harb. Symp. Quant. Biol., 27, 1-24 (1962).
14. Silva, A. M. and Rossmann, M. G., Refined structure of southern bean mosaic virus at 2.9 Å resolution. J. Mol. Biol., 197, 69-87 (1987).
15. Bhuvaneshwari, M., Subramanya, H. S., Gopinath, K., Savithri, H. S., Nayudu, M. V., and Murthy, M. R. N., Structure of sesbania mosaic virus at 3 Å resolution. Structure, 3, 1021-1030 (1995).
16. Durham, A. C., Hendry, D. A., and von Wechmar, M. B., Does calcium ion binding control plant virus disassembly? Virology, 77, 524-533 (1977).
17. Thompson, J., Higgins, D. G., and Gibson, T. J., CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680 (1994).
18. Hermodson, M. A., Abad-Zapatero, C., Abdel-Meguid, S. S., Pundak, S., Rossmann, M. G., and Tremaine, J. H., Amino acid sequence of southern bean mosaic virus coat protein and its relation to the three-dimensional structure of the virus. Virology, 119, 133-149 (1982).
19. Gopinath, K., Sundareshan, S., Bhuvaneswari, M., Karande, A., Murthy, M. R., Nayudu, M. V., and Savithri, H. S., Primary structure of sesbania mosaic virus coat protein: its implications to the assembly and architecture of the virus. Indian J. Biochem. Biophys., 31, 322-328 (1994).
20. Saitou, N. and Nei, M., Then neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425 (1987).
21. Page, R. D. M., Tree View: an application to display phylogenetic trees on personal computers. Comput. Applic. Biosci., 12, 357-358 (1996).