Topology of membrane proteins

Journal of Chemical Information and Computer Sciences

Volumn 41, Issue 2, 2001, Pages 364-368

  Tusnády, Gábor E ^a,b   Simon, István ^a,b  

^a INSTITUTE OF ENZYMOLOGY   (Hungary)

^b EÖTVÖS LORÁND UNIVERSITY   (Hungary)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; MEMBRANE PROTEIN;

ALGORITHM; ARTICLE; CHEMISTRY; COMPARATIVE STUDY; PHYSICAL CHEMISTRY; PROTEIN SECONDARY STRUCTURE; X RAY DIFFRACTION;

ALGORITHMS; AMINO ACIDS; CHEMISTRY, PHYSICAL; MEMBRANE PROTEINS; PROTEIN STRUCTURE, SECONDARY; X-RAY DIFFRACTION;

EID: 0035263416     PISSN: 00952338     EISSN: None     Source Type: Journal    
DOI: 10.1021/ci0001280     Document Type: Article

References (12)

1. Jones, D. T. Do transmembrane protein superfolds exist? FEES Lett. 1998, 423, 281-285.
2. Wallin, E.; von Heijne, G. Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organism. Protein Sci. 1998, 7, 1029-1038.
3. Kyte, J.; Doolittle, R. F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 1982, 157, 105-132.
4. Eisenberg, D.; Schwartz, E.; Komáromy, M.; Wall R. Analysis of membrane and surface protein sequences with the hydrophobic moment plot. J. Mol. Biol. 1984, 179, 125-142.
5. Engelman, D. M.; Steitz, T. A.; Goldman, A. Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins. Annu. Rev. Biophys. Chem. 1986, 75, 321-353.
6. Cornette, J. L.; Cease, K. B.; Margalit, H.; Spouge, L.; Berzofsky, J. A.; DeLisi, C. Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins. J. Mol. Biol. 1987, 195, 659-685.
7. Esposti, M. D.; Crimi, M.; Venturoli, G. A critical evaluation of the hydropathy profile of membrane proteins. Eur. J. Biochem. 1990, 190, 207-219.
8. Ponnuswamy, P. K.; Gromiha, M. M. Prediction of transmembrane helices from hydrophobic characteristics of protein. Int. J. Pept. Protein Res. 1993, 42, 326-341.
9. Gromiha, M. M.; Ponnuswamy, P. K. Prediction of protein secondary structures from their hydrophobic characteristics. Int. J. Pept. Protein Res. 1995, 45, 225-240.
10. Tusnády, G. E.; Tusnády, G.; Simon, I. Independence divergence-generated binary trees of amino acids. Protein Eng. 1995, 8, 417-423.
11. Tüdos, É.; Cserzo, M.; Simon, I. Predicting isomorphic residue replacements for protein design. Int. J. Pept. Protein Res. 1990, 36, 236-239.
12. Jones, D. T.; Taylor, W. R.; Thorton, J. M. A model recognition approach to the prediction of all-helical membrane protein structure and topology. Biochemisty 1994, 33, 3038-3049. http://insulin.brunel.ac.uk/jones/memsat.html.