Strategy for protein isoform identification from expressed sequence tags and its application to peptide mass fingerprinting

Proteomics

Volumn 1, Issue 2, 2001, Pages 186-193

  Lisacek, Frédérique C ^a,b   Traini, Mathew D ^a   Sexton, Diane ^a   Harry, Jenny L ^a   Wilkins, Marc R ^a  

^a Proteome Systems Limited   (United States)

^b LABORATOIRE DES SCIENCES DU CLIMAT ET DE L ENVIRONNEMENT   (France)

Author keywords

Expressed sequence tag; Peptide mass fingerprinting; Protein identification; Protein isoform; Proteomics; Sequence

Indexed keywords

ENOLASE; ISOPROTEIN; LIPOXYGENASE; PROTEIN; PROTEOME; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CLUSTER ANALYSIS; EXPRESSED SEQUENCE TAG; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; MOLECULAR GENETICS; PEPTIDE MAPPING; RICE; SEQUENCE ALIGNMENT; SOYBEAN; TOMATO; TWO DIMENSIONAL GEL ELECTROPHORESIS;

AMINO ACID SEQUENCE; CLUSTER ANALYSIS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; EXPRESSED SEQUENCE TAGS; LIPOXYGENASE; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PEPTIDE MAPPING; PHOSPHOPYRUVATE HYDRATASE; PLANT PROTEINS; PROTEIN ISOFORMS; PROTEINS; PROTEOME; SEQUENCE ALIGNMENT; SOYBEANS;

EID: 0035260225     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/1615-9861(200102)1:2<186::AID-PROT186>3.0.CO;2-G     Document Type: Article

References (14)

1. Tonella, L., Walsh, B. J., Sanchez, J. C., et al., Electrophoresis 1998, 19, 1960-1971.
2. Adams, M. D., Kelley, J. M., Gocayne, J. D., et al., Science 1991, 252, 1651-1656.
3. Huang, X., Madan, A., Genome Res. 1999, 9, 868-877.
4. Green, P., 1996 PHRAP software, unpublished, see http:// bozeman.genome.washington.edu/phrap.docs/phrap.html
5. Henzel, W. J., Billeci, T. M., Stults, J. T., Wong, S. C., Grimley, C., Watanabe, C. Proc. Natl. Acad. Sci. USA 1993, 90, 5011-5015.
6. Mann, M., Hojrup, P., Roepstorff, P., Biol. Mass Spectrom. 1993, 22, 338-345.
7. James, P., Quadroni, M., Carafoli, E., Gonnet, G. Biochem. Biophys. Res. Commun. 1993, 195, 58-64.
8. Yates III, J. R., Speicher, S., Griffin, P. R., Hunkapiller, T., Anal. Biochem. 1993, 214, 397-408.
9. Pappin, D. J., Hojrup, P., Bleasby, A. J., Curr. Biol. 1993, 3, 327-332.
10. Cordwell, S. J., Wilkins, M. R., Cerpa-Poljak, A., Gooley, A. A., Duncan, M., Williams, K. L., Humphery-Smith, I., Electrophoresis 1995, 16, 438-443.
11. Wilkins, M. R, Williams, K. L., J. Theor. Biol. 1997, 186, 7-15.
12. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., Lipman, D. J., Nucleic Acids Res. 1997, 25, 3389-3402.
13. Wootton, J. C., Federhen, S., Methods Enzymol. 1996, 266, 554-571.
14. Moons, A., Gielen, J., Vandekerckhove, J., Van der Straeten, D., Gheysen, G., Van Montagu, M., Planta 1997, 202, 443-454.