Development of a 950-gene DNA array for examining gene expression patterns in mouse testis

Genome Biology

Volumn 2, Issue 4, 2001, Pages

  Rockett, John C ^a   Christopher Luft, J ^a   Brian Garges, J ^a   Krawetz, Stephen A ^b,c   Hughes, Mark R ^b,c   Hee Kirn, Kwan ^d   Oudes, Asa J ^d   Dix, David J ^a  

^a U S ENVIRONMENTAL PROTECTION AGENCY   (United States)

^b Center for Molecular Medicine and Genetics   (United States)

^c WAYNE STATE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d WASHINGTON STATE UNIVERSITY   (United States)

Author keywords

Additional Data File; Membrane Array; Mouse Gene Expression; Mouse Testis; Transcriptome Gene

Indexed keywords

RNA;

ADULT; ANIMAL; ARTICLE; C57BL MOUSE; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENETIC TRANSCRIPTION; GENETICS; HEAT; HUMAN; MALE; METABOLISM; METHODOLOGY; MIDDLE AGED; MOUSE; TESTIS;

ADULT; ANIMALS; GENE EXPRESSION PROFILING; HEAT; HUMANS; MALE; MICE; MICE, INBRED C57BL; MIDDLE AGED; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RNA; TESTIS; TRANSCRIPTION, GENETIC;

EID: 0035228228     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2001-2-4-research0014     Document Type: Article

References (22)

1. Rockett JC, Dix DJ: Application of DNA arrays to toxicology. Environ Health Perspect. 1999, 107: 681-686. DOI: 10.1289/ehp.99107681
2. Fodor SPA, Read JL, Pirrung MC, Stryer L, Tsai Lu A, Solas D: Light-directed, spatially addressable parallel chemical synthesis. Science. 1991, 251: 767-773. DOI: 10.1126/science.1990438
3. Lipshutz RJ, Morris MS, Chee M, Hubbell E, Kozal MJ, Shah N, Shen N, Yang R, Fodor SPA: Using oligonucleotide probe arrays to access genetic diversity. BioTechniques. 1995, 19: 442-447.
4. Lockhart DJ, Dong H, Byrne MC, Follettie MT, Gallo MV, Chee MS, Mittmann M, Wang C, Kobayashi M, Horton H, Brown EL: Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat Biotechnol. 1996, 14: 1675-1680. DOI: 10.1038/nbt1296-1675
5. Schena M, Shalon D, Davis RW, Brown PO: Quantitative monitoring of gene expression patterns with complementary DNA microarray. Science. 1995, 270: 467-470. DOI: 10.1126/science.270.5235.467
6. The Brown Lab. [http://cmgm.Stanford.EDU/pbrown/]
7. Rockett JC, Dix DJ: DNA arrays: technology, options and toxicological applications. Xenobiotica. 2000, 30: 155-177. 10.1080/004982500237758. DOI: 10.1080/004982500237758
8. Dix DJ, Garges JB, Hong RL: Inhibition of hsp70-1 and hsp70-3 expression disrupts preimplantation embryogenesis and heightens embryo sensitivity to arsenic. Mol Reprod Dev. 1998, 51: 373-380. 10.1002/(SICI)1098-2795(199812)51:4<373::AID-MRD3>3.3.CO;2-5. DOI: 10.1002/(SICI)1098-2795(199812)51:4<373::AID-MRD3>3.0.CO;2-E
9. Luft JC, Garges JB, Rockett JC, Dix DJ: Male reproductive toxicity of bromochloroacetic acid in mice. Biol Reprod. 2000, 62 (Suppl 1): 1-246.
10. GeneCards: human genes, maps, proteins and diseases. [http://www.dkfz-heidelberg.de/GeneCards/]
11. Nelson M: A one-step source for information about human genes. Genome Biol. 2000, 1: reports2049-
12. The I.M.A.G.E. consortium. [http://image.llnl.gov/]
13. I.M.A.G.E. quality control - process and results. [http://image.llnl.gov/image/qc/bin/display_error_rates#Results]
14. UniGene Resources. [http://www.ncbi.nlm.nih.gov/UniGene/]
15. GenBank Database. [http://www.psc.edu/general/software/packages/genbank/genbank.html]
16. Swiss-Prot. [http://www.ebi.ac.uk/swissprot/]
17. Environmental Protection Agency MicroArray Consortium. [http://www.epa.gov/nheerl/epamac/]
18. Hegde P, Qi R, Abernathy K, Gay C, Dharap S, Gaspard R, Earle-Hughes J, Snesrud E, Lee N, Quackenbush J: A concise guide to cDNA microarray analysis. BioTechniques. 2000, 29: 548-562.
19. Masters BA, Kelly EJ, Quaife CJ, Brinster RL, Palmiter RD: Targeted disruption of metallothionein I and II genes increases sensitivity to cadmium. Proc Natl Acad Sci USA. 1994, 91: 584-588. DOI: 10.1073/pnas.91.2.584
20. Mouse GEM 1. [http://www.incyte.com/reagents/gem/products.shtml]
21. Halgren RG, Fielden MR, Zacharewski TR: Gene expression in the mouse testis: development of a murine testis transcriptome by mining public databases. The Toxicologist. 2000, 54: 386-
22. dbTEST - Database of Transcripts Expressed in Spermatogenesis and Testis. [http://35.8.60.132/dbtest.html]