Ribotyping of rhizobia nodulating Acacia mangium and Paraserianthes falcataria from different geographical areas in Indonesia using PCR-RFLP-SSCP (PRS) and sequencing

Environmental Microbiology

Volumn 3, Issue 4, 2001, Pages 273-280

  Clapp, Justin P ^b   Mansur, Irdika ^a   Dodd, John C ^c   Jeffries, Peter ^b  

^a BOGOR AGRICULTURAL UNIVERSITY   (Indonesia)

^b UNIVERSITY OF KENT   (United Kingdom)

^c Sittingbourne Research Centre   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ACACIA; BRADYRHIZOBIUM; FABACEAE; GENES, BACTERIAL; GENES, RRNA; INDONESIA; NITROGEN FIXATION; PHYLOGENY; PLANTS, MEDICINAL; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; POLYMORPHISM, SINGLE-STRANDED CONFORMATIONAL; RIBOTYPING; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

ACACIA MANGIUM; BACTERIA (MICROORGANISMS); BRADYRHIZOBIUM ELKANII; BRADYRHIZOBIUM JAPONICUM; FALCATARIA; FALCATARIA MOLUCCANA; MESORHIZOBIUM LOTI; PARASERIANTHES; PROKARYOTA;

EID: 0035214537     PISSN: 14622912     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1462-2920.2001.00191.x     Document Type: Article

References (47)

1. R factor transfer in Rhizobium leguminosarum
2. Diversity of a rhizobial community associated with Lotus corniculatus and Ononis repens at Samphire Hoe, UK, determined by PRS (PCR-RFLP-SSCP) analysis of 16S rRNA genes
3. Detection of genetic variation by DNA conformational and denaturing gradient methods
4. Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergenic consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria
5. Phylogenetic diversity of aggregate-attached vs free-living marine bacterial assemblages
6. Phylogenetic grouping and identification of Rhizobium isolates on the basis of random amplified polymorphic DNA profiles
7. Phenotypic and genotypic characterization of bradyrhizobia nodulating the leguminous tree Acacia albida
8. A comparison of Bradyrhizobium strains using molecular, cultural and field studies
9. Nitrogen-fixing potential of Acacia mangium and Acacia auriculiformis seedlings inoculated with Bradyrhizobium and Rhizobium spp.
10. Inoculation of Acacia mangium with alginate beads containing selected Bradyrhizobium strains under field condition: Long-term effect on plant growth and persistance of the introduced strains in soil
11. Diversity of partial 16S rRNA sequences among and within strains of African rhizobia isolated from Scacia and Prosopis
12. Review Article: How sensitive is PCR-SSCP?
13. Transfer of Rhizobium japonicum Buchanan 1980 to Bradyrhizobium gen.nov., a genus of slow-growing, root nodule bacteria from leguminous plants
14. Genetic diversity and phylogeny of rhizobia that nodulate Acacia spp. in Morocco assessed by analysis of rRNA genes
15. Diversity of rhizobia isolated from various Hedysarum species
16. The procedure of polymerase chain reaction restriction fragment single strand conformation polymorphism analysis by Hhal Hincll to detect mitochondrial DNA mutations
17. Genetic diversity in Bradyrhizobium japonicum Jordan 1982 and a proposal for Bradyrhizobium elkanii sp. nov.
18. Molecular diversity of rhizobia occuring on native shrubby legumes in Southeastern Australia
19. Rapid identification of rhizobia by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes
20. Typing of rhizobia by PCR DNA fingerprinting and PCR-restriction fragment length polymorphism analysis of chromosomal and symbiotic gene regions: Application to Rhizobium leguminosarum and its different biovars
21. rRNA based identification and detection systems for rhizobia and other bacteria
22. Random amplified polymorphic DNA analysis of root-nodulating bacterial strains from Arachis hypogaea with physiological characteristics of both fast and slow growers
23. Characterisation of rhizobia isolated from different divergence groups of tropical leguminosae by comparative polyacrylamide gel electrophoresis of their total proteins
24. Biodiversity of rhizobia isolated from a wide range of forest legumes in Brazil
25. Identification and characterisation of fast- and slow-growing root nodule bacteria from South-Western Australian soils able to nodulate Acacia saligna
26. Single-strand conformation polymorphism and heteroduplex analysis for gel-based mutation detection
27. Studies in the Malaysian, Australian and Pacific Ingeae (Leguminosae-Mimosoideae): The genera Archidendropsis, Wallaceo-dendron, Paraserianthes, Pararchidendron and Serianthes (part 2)
28. Genotypic and phenotypic diversity of Rhizobium isolated from chickpea (Cicer arietinum L.)
29. Phylogeny of bacterial symbionts of the leguminous tree Acacia mangium
30. Treeview: An application to display phylogenetic trees on personal computers
31. Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation polymorphism-based genetic profiles of small-subunit rRNA genes
32. Taxonomy, distribution, biology, and use as an exotic
33. Strain-specific fingerprints of Rhizobium galegae generated by PCR with arbitrary and repetitive primers
34. A new approach to utilize PCR-Single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis
35. Effect of field inoculation with Sinorhizobium melioti L33 on the composition of bacterial communities in rhizospheres of a terget plant (Medicago sativa) and a non-target plant (Chenopodium album) - Linking of 16S rRNA gene-based single-strand conformation polymorphism community profiles to the diversity of cultivated bacteria
36. The sensitivity of single-strand conformation polymorphism analysis for the detection of single base substitutions
37. Acacia mangium-Rhizobium symbiosis: Selection and propagation of the host plant and the microorganism
38. Detection of Bradyrhizobium spp. & B. japonicum in Thailand by primer-based technology and direct DNA extraction
39. Identification of mycobacteria by non-radioisotopic single-strand conformation polymorphism analysis
40. Rhizobia that nodulate tree legumes: Specificity of the host for nodulation and effectiveness
41. Effects of rhizobium inoculation on growth and nodualtion of Albizia falcataria (L.) Fosh. & Acacia mangium Willd. In the nursery
42. Bacterial evolution
43. Bradyrhizobium liaoningensis sp. nov. isolated from the root nodules of soybean
44. Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer
45. Phylogeny and taxonomy of rhizobia