The TATA-less promoter of VP1, a plant gene controlling seed germination

Mitochondrial DNA

Volumn 12, Issue 2, 2001, Pages 107-114

  Carrari, Fernando ^a   Frankel, Nicolás ^a   Lijavetzky, Diego ^b   Benech Arnold, Roberto ^c   Sánchez, Rodolfo ^c   Iusem, Norberto D ^a  

^a INSTITUTO DE FISIOLOGÍA   (Argentina)

^b INSTITUTO NACIONAL DE TECNOLOGÍA AGROPECUARIA INTA   (Argentina)

^c UNIVERSIDAD DE BUENOS AIRES   (Argentina)

Author keywords

germination; MITE; Sorghum bicolor; TATA less promoter; vpl gene

Indexed keywords

BASE SEQUENCE; CEREALS; GERMINATION; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; PROMOTER REGIONS (GENETICS); TATA BOX; TRANS-ACTIVATORS; TRANSCRIPTION INITIATION SITE;

ACARI; ARABIDOPSIS; EMBRYOPHYTA; SORGHUM BICOLOR; ZEA MAYS;

EID: 0035209996     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.3109/10425170109047563     Document Type: Article

References (37)

1. Altschul S. F., Madden T. L., Schäffer A. A., Zhang J., Zhang Z., Miller W. and Lipman D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25, 3389-3402. (Pubitemid 27359211)
2. Anderson J. A., Sorrells M. E. and Tanksley S. D. (1993). RFLP analysis of genomic regions associated with resistance to pre-harvest sprouting in wheat. Crop Science 33, 453-459.
3. Baker S. S., Wilhelm K. S. and Thomashow M. F. (1994). The 5'-region of Arabidopsis thalianacor 15a has as-acting elements that confer cold-, drhought-and ABA-regulated gene expression. Plant Molecular Biology 24, 701-713. (Pubitemid 2077568)
4. Baxevanis A. D. (2000). The molecular biology database collection: an online compilation of revlevant database resources. Nucleic Acids Research 28, 1-7. (Pubitemid 30047700)
5. Block A., Dangle J. L., Hahlbrock K. and Schulze-Lefert P. (1990). Functional borders, genetic fine structure, and distance requirements of cis-elemens mediating light responsiveness of the parsley chalcone synthase pomoter. Proceedings of the National Academy of Science (USA) 87, 5387-5391.
6. Bobb A. J., Eiben H. G. and Bustos M. M. (1995). PvAlf, an embryo-specific acidic transcriptional activator enhances gene expression from phaseolin and phytohemagglutinin promoters. The Plant Journal 8, 331-343.
7. Boisclair Y. R. and Brown A. L. (1995). Use of reverse ligation-PCR to identify transcriptional start sites in GC-rich TATA-less genes: application to the rat IGFBP-2 gene. DNA Cell Biology 14, 731-739.
8. Busk P. K. and Pages M. (1998) Regulation of abscisic acid-induced transcription. Plant Molecular Biology 37, 425-435. (Pubitemid 28209567)
9. Carrari F., Perez-Flores L., Lijavetzky D., Enciso S., Sanchez R., Benech-Arnold R. and Iusem N. Cloning and expression of a sorghum gene with homology to maize vp1. Its potential involvement in pre-harvest sprouting resistance. Plant Molecular Biology (in press).
10. Castor L. L. and Frederiksen R. A. (1977). Seed moulding of grain sorghums caused by Fusarium and Curvularia. Proceeding of Annual Phytopatholy Society 4, 151.
11. Cretin C., Santi S., Keryer E., Lepiniec L., Tagu D., Vidal J. and Gadal P. (1991). The phosphoenolpyruvate carboxylase gene family of Sorghum: promoter structures, amino acid sequences and expression of genes. Gene 99, 87-94.
12. de Freitas F. A., Yunes J. A., da Silva M. J., Arruda P. and Leite A. (1994). Structural characterization and promoter activity analysis of the γ-kafirin gene from sorghum. Molecular and General Genetics 245, 177-186. (Pubitemid 24357335)
13. DeRose R. T., Begum D. and Hall T. C. (1996). Analysis of kafirin promoter activity in transgenic tobacco seeds. Plant Molecular Biology 6, 1029-1035. (Pubitemid 27049900)
14. Elrouby N. and Bureau T. E. (2000). Molecular characterization of the Abpl 5'-flanking region in maize and the teosintes. Plant Physiology 124, 369-377.
15. Giraudat J., Hauge B. M., Valon C., Smalle J., Parcy F. and Goodman H. M. (1992). Isolation of the Arabidopsis ABB gene by positional cloning. The Plant Cell 4, 1251-1261.
16. Hattori T., Terada T., and Hamasuna S. T. (1994) Sequence and functional analyses of the rice gene homologous to the maize Vpl. Plant Molecular Biology 24, 805-810. (Pubitemid 2077606)
17. Hollung K., Espelund M., Schou K. and Jakobsen K. S. (1997). Developmental, stress and ABA modulation of mRNA levels for bZip transcription factors and Vpl in barley embryos and embryo-derived suspension cultures. Plant Molecular Biology 35, 561-571. (Pubitemid 27433933)
18. Hwang Y. S., Karrer E. E., Thomas B. R., Chen L. and Rodriguez R. L. (1998). Three cis-elements required for rice α-amylase Amy3D expression during sugar starvation. Plant Molecular Biology 36, 331-341. (Pubitemid 28077007)
19. Jiang C. Iu B. and Singh J. (1996) Requirement of a CCGAC cis-acting element for cold induction of the BN115 gene from Brassica napus. Plant Molecular Biology 30, 679-684. (Pubitemid 3040090)
20. Jones H. D., Peters N. C. B. and Holdsworth M. J. (1997). Genotype and environment interact to control dormancy and differential expression of the VIVIPAROUS-1 homologue in embryos of Avena fatua. The Plant journal 12, 911-920. (Pubitemid 27484496)
21. Kidwell M. G and Lisch D. (1997). Transposable elements as sources of variation in animals and plants. Proceeding of the National Academy of Sciences 94, 7704-7711. (Pubitemid 27343714)
22. Kim S. Y., Chung H. and Thomas T. L. (1997) Isolation of an novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modofied yeast one-hybrid system. The Plant journal 11(6), 1237-1251. (Pubitemid 27307241)
23. Le Gourrierec J., Li Y. F. and Zhou D. X. (1999). Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. The Plant Journals, 663-668.
24. Leite A., Kemper E. L., da Silva M. J., Luchessi A. D., Siloto R. M. P., Bonaccorsi E. D., El-Dorry H. F. and Arruda P. (2000). Expression of correctly processed human growth hormone in seeds of transgenic tobacco plants. Molecular Breeding 6, 47-53. (Pubitemid 30118785)
25. Lijavetzky D., Martinez M. C., Carrari F. and Hopp H. E. (2000). QTL analysis and mapping of pre-harvest sprouting resistance in Sorghum. Euphytica 112, 125-135. (Pubitemid 30218109)
26. Luchetta P., Cretin C. and Gadal P. (1990). Structure and characterization of the Sorghum vulgare gene encoding NADP-malate dehydrogenase. Gene 89, 171-177. (Pubitemid 20206196)
27. McCarty D. R., Hattori T., Carson C. B., Vasil V., Lazar M. and Vasil I. K. (1991). The viviparous-1 developmental gene of maize encodes a novel transcriptional activator. Cell 66, 895-905. (Pubitemid 121001724)
28. Oberthur L., Dyer W., Ullrich S. E. and Blake T. K. (1995). Genetic analysis of seed dormancy in barley (Hordeum vulgare L.). Journal of Quantitative Trait Loci. Available on World Wide Web http://probe.nalusda.gov. 8000/otherdocs/jqtll995-05/dormancy.html.jqtl.
29. Pelese-Siebenbourg F., Caelles C., Kader J. C., Delseny M. and Puigdomenech P. (1994). A pair of genes coding for lipid-transfer proteins in Sorghum vulgare. Gene 148, 305-308. (Pubitemid 24333690)
30. Phillips J. and Conrad U. (1994). Genomic sequences from Nicotiana tabacum homologous to the maize transcriptional activator gene Viviparous 1. Journal of Plant Physiology 144, 760-761.
31. Pirovano L., Lanzini S., Hartings H., Lazzaroni N., Rossi V., Joshi R., Thompson R. D., Salamini F. and Motto M. (1994). Structural and functional analysis of an Opaque-2-related gene from sorghum. Plant Molecular Biology 24, 515-523. (Pubitemid 2054802)
32. Rohde A., Kurup S. and Holdsworth M. (2000). ABB emerges from the seed. Trends in Plant Science 5, 418-419.
33. Steinbach H. S., Benech-Arnold R. and Sanchez R. A. (1997). Hormonal regulation of dormancy in developing Sorghum seeds. Plant Physiology 113, 149-154. (Pubitemid 27111445)
34. Steinbach H. S., Benech-Arnold R., Kristof G., Sánchez R. A. and Marcucci-Poltri S. (1995). Physiological basis of pre-harvest sprouting resistance in Sorghum bicolor (L.) Moench. ABA levels and sensitivity in developing embryos of sprouting-resistant and-susceptible varieties. Journal of Experimental Botany 46, 701-709.
35. Urao T. Yamaguchi-Shinozaki K., Urao S. and Shinozaki K. (1993) An Arabidopsis myb homoloog is induced by dehidration stress and its gene product binds to the conserved MYB sequence. The Plant Cell 5, 1529-1539. (Pubitemid 2021767)
36. Van der Schaar W., Alonso-Blanco C., Leon-Kloosterziel K. M., Jansen R. C., Van Ooijen J. W. and Koornneef M. (1997). QTL analysis of seed dormancy in Arabidopsis using recombinant inbred lines and MQM mapping. Heredity 79, 190-200. (Pubitemid 27340959)
37. Yanagisawa S. and Schmidt R. (1999). Diversity and similarity among recognition sequences of Dof transcription factors. The Plant Journal 17, 209-214.