Phylogeography of the red-tailed chipmunk (Tamias ruficaudus), a northern Rocky Mountain endemic

Molecular Ecology

Volumn 10, Issue 11, 2001, Pages 2683-2695

  Good, J M ^a   Sullivan, J ^a  

^a UNIVERSITY OF IDAHO   (United States)

Author keywords

Cytochrome b; Likelihood; Nested clade analysis; Northern Rocky Mountains; Phylogeography; Tamias ruficaudus

Indexed keywords

ANIMALS; BRITISH COLUMBIA; DNA, MITOCHONDRIAL; ECOSYSTEM; GENETICS, POPULATION; IDAHO; MONTANA; PHYLOGENY; SCIURIDAE; VARIATION (GENETICS);

CELLULAR ORGANISMS; MAMMALIA; STAPHYLOCOCCUS PHAGE 187; TAMIAS RUFICAUDUS; VERTEBRATA;

EID: 0035206302     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.0962-1083.2001.01397.x     Document Type: Article

References (67)

1. Speciation durations and Pleistocene effects on vertebrae phylogeography
2. Holocene vegetational history of the western United States
3. Sequence and gene organization of mouse mitochondrial DNA
4. Comparative phylogeography of Northwestern North America: A synthesis
5. Amazonian speciation, a necessarily complex model
6. Diagnosis of Eutamias obscurus (Rodentia Sciuridae)
7. Root probabilities for intraspecific gene trees under neutral coalescent theory
8. TCS, a computer program to estimate gene genealogies
9. Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction
10. Plant geography of Idaho
11. Floristic plant geography of eastern Washington and northern Idaho
12. Paleoclimates, paleovegetation, and paleofloras during the late Quaternary
13. The ages of alleles and a coalescent
14. Spatial response of mammals to late Quarternary environmental fluctuations
15. Confidence limits on phylogeny, an approach using the bootstrap
16. Phylogenies from molecular sequences: Inference and reliability
17. Genetic variation in allozymes of western larch
18. History of the vegetation, cretaceous-tertiary
19. Environmental fluctuations and evolution of mammalian faunas during the last glaciation in North America
20. A fast method for high quality genomic DNA extraction from whole human blood
21. Postglacial distribution and species substructures, lessons from pollen, insects and hybrid zones
22. Some genetic consequences of ice ages, and their role in divergence and speciation
23. Post-glacial re-colonization of European biota
24. Different voles for different hole: Environmental restrictions on refugial survival of mammals
25. Diagnoses of seven new chipmunks of the genus Eutamias, with a list of the American species
26. Revision of the American chipmunks (genera Tamias and Eutamias)
27. Spatial patterns of genetic variation generated by different forms of dispersal during range expansion
28. Comments on the nomenclature of some mammals of the Pacific Northwest
29. Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers
30. Reexamination of postglacial vegetation history in northern Idaho, Hager Pond, Bonner County
31. Late Quaternary vegetation history at Waits Lake, Colville River Valley, Washington
32. Late-Quaternary pollen records from the interior Pacific Northwest and northern Great Basin of the United States
33. Phylogeography of the tailed frog (Ascaphus truei): Implications for biogeography of the Pacific Northwest
34. Geographic variation and taxonomy of Colorado and Hopi chipmunks (genus Eutamias)
35. Preliminary analysis of geographic variation in red-tailed chipmunks (Eutamias ruficaudus)
36. The mammalian baculum, hypotheses on the nature of bacular variability
37. Molecular phylogeny of the chipmunk genus Tamias based on the mitochondrial cytochrome oxidase subunit II gene
38. Intraspecific gene genealogies: Tree grafting into networks
39. GeoDis, a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes
40. Glaciation of the Rocky Mountains
41. The Cordilleran ice sheet of the northern Rocky Mountains and related Quaternary history
42. The molecular phylogeographic bridge between deep and shallow history in continental biotas
43. The historical assembly of continental biotas, Late Quarternary range-shifting, areas of endemism, and biogeographic structure in North American mammal fauna
44. Isozyme variation in Pinus monticola
45. Phylogeography and molecular systematics of the Peromyscus aztecus group (Rodentia: Muridae) inferred using parsimony and maximum likelihood
46. Are guinea pigs rodents? The importance of adequate models in molecular phylogenetics
47. Geographic variation of the western chipmunks Tamias senex and T. siskiyou, with two new subspecies from California
48. Phylogenetic inference
49. Nested clade analyses of phylogeographic data, testing hypotheses about gene flow and population history
50. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonucleus mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila
51. A cladistic analysis of phenotypic associations of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation
52. Separating population structure from population history, a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum
53. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination
54. The Cordilleran ice sheet in Washington, Idaho, and Montana
55. Reversibility and the age of an allele. I. Moran's infinitely many neutral alleles model
56. The baculum in the chipmunks of western North America
57. Neogene floristic and vegetational history of the Pacific Northwest
58. Maximum likelihood trees from DNA sequences, a peculiar statistical estimation problem
59. Comparative phylogeography in North American birds