The structure of the archaebacterial ribosomal protein S7 and its possible interaction with 16S rRNA1

Journal of Biochemistry

Volumn 130, Issue 5, 2001, Pages 695-701

  Hosaka, Harumi ^a   Yao, Min ^a   Kimura, Makoto ^b   Tanaka, Isao ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b KYUSHU UNIVERSITY   (Japan)

Author keywords

Decoding center; Protein RNA interactions; Ribosome; RNA binding protein; X ray structure.

Indexed keywords

BACTERIAL PROTEIN; PROTEIN S7; RIBOSOME PROTEIN; RNA 16S; TRANSFER RNA; UNCLASSIFIED DRUG;

ALPHA HELIX; AMINO TERMINAL SEQUENCE; ARCHAEBACTERIUM; ARTICLE; BETA CHAIN; CRYSTAL STRUCTURE; HYDROPHOBICITY; NONHUMAN; PROTEIN ASSEMBLY; PROTEIN RNA BINDING; PROTEIN STRUCTURE; PYROCOCCUS; RIBOSOME SUBUNIT;

ARCHAEA; BACTERIA (MICROORGANISMS); EUKARYOTA; PYROCOCCUS; PYROCOCCUS HORIKOSHII;

EID: 0035196322     PISSN: 0021924X     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.jbchem.a003036     Document Type: Article

References (26)

1. Assembly of the 30S subunit from Escherichia coli ribosomes occurs via two assembly domains which are initiated by S4 and S7
2. Protein-induced conformational changes in 16 S ribosomal RNA during the initial assembly steps of the Escherichia coli 30 S ribosomal subunit
3. Nucleotide residues of tRNA, directly interacting with proteins within the complex of the 30 S subunit of E. coli ribosome with poly(U) and NAcPhe-tRNA(Phe)
4. Determination of tRNA nucleotide residues directly interacting with proteins in the post- and pretranslocated ribosomal complexes
5. Photochemical cross-linking of the anticodon loop of yeast tRNA(Phe) to 30S-subunit protein S7 at the ribosomal A and P sites
6. The decoding region of 16S RNA; a cross-linking study of the ribosomal A, P and E sites using tRNA derivatized at position 32 in the anticodon loop
7. Site-directed cross-linking of mRNA analogues to the Escherichia coli ribosome; identification of 30S ribosomal components that can be cross-linked to the mRNA at various points 5′ with respect to the decoding site
8. Ribosomal protein S7: A new RNA-binding motif with structural similarities to a DNA architectural factor
9. The structure of ribosomal protein S7 at 1.9 Å resolution reveals a beta-hairpin motif that binds double-stranded nucleic acids
10. Matching the crystallographic structure of ribosomal protein S7 to a three-dimensional model of the 16S ribosomal RNA
11. Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution
12. Structure of the 30S ribosomal subunit
13. Crystal structure of the ribosome at 5.5 Å resolution
14. Auto-indexing of rotation diffraction images and parameter refinement
15. Scaling of MAD data
16. AmoRe: An automated package for molecular replacement
17. Improved methods for binding protein models in electron density maps and the location of errors in these models
18. Crystallography & NMR system: A new software suite for macromolecular structure determination
19. Protein Data Bank archives of three-dimensional macro-molecular structures
20. The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
21. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
22. Role of the N-terminal region of ribosomal protein S7 in its interaction with 16S rRNA which binds to the concavity formed by the beta-ribbon arm and the alpha-helix
23. Tagging ribosomal protein S7 allows rapid identification of mutants defective in assembly and function of 30 S subunits
24. Ribosomal protein S7 from Escherichia coli uses the same determinants to bind 16S ribosomal RNA and its messenger RNA
25. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
26. PROCHECK: A program to check the stereochemical quality of protein structures