ODS2: A multiplatform software application for creating integrated physical and genetic maps

Genetics

Volumn 157, Issue 3, 2001, Pages 1045-1056

  Hall, David ^a,b   Bhandarkar, Suchendra M ^a   Wang, Jian ^b  

^a University of Georgia ^*  (United States)

^b 415 Boyd Graduate Studies Research Ctr ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; DATA BASE; DNA HYBRIDIZATION; GENE LIBRARY; GENE MAPPING; GENETIC MARKER; GENOME; INFORMATION PROCESSING; MOLECULAR CLONING; NEUROSPORA CRASSA; NONHUMAN; PRIORITY JOURNAL;

ALGORITHMS; CHROMOSOME MAPPING; CLONING, MOLECULAR; COMPUTER SIMULATION; CONTIG MAPPING; COSMIDS; GENE LIBRARY; LINKAGE (GENETICS); NEUROSPORA CRASSA; NUCLEIC ACID HYBRIDIZATION; PHYSICAL CHROMOSOME MAPPING; SOFTWARE;

NEUROSPORA CRASSA;

EID: 0035107494     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (42)

1. Hybridization mapping of Neurospora crassa linkage groups II and V
2. Physical mapping of chromosomes using unique probes
3. Constructing a physical map of the Pneumosystis genome
4. Chromosome reconstruction from physical maps using a cluster of workstations
5. Parallel computation of a maximum likelihood estimator of a physical map
6. A high-resolution, fluorescence-based, semiautomated method for DNA fingerprinting
7. Computing physical maps of chromosomes with nonoverlapping probes by branch and cut
8. A branch-and-cut approach to physical mapping of chromosomes by unique end-probes
9. A YAC contig map of the human genome
10. Toward a physical map of the genome of the nematode Caenorhabditis elegans
11. Microcanonical Monte Carlo simulation
12. The use of simulated annealing in chromosome reconstruction experiments based on binary scoring
13. ODS (ordering DNA sequences): A physical mapping algorithm based on simulated annealing
14. CONTIGMAKER: Software for physical map contig assembly
15. Physical map of a conditionally dispensable chromosome in Nectria haematococca MP VI and location of chromosome breakpoints
16. On the design of genome mapping experiments using short synthetic oligonucleotides
17. Fragment collapsing and splitting while assembling high-resolution restriction maps
18. Sequence-tagged site (STS) content mapping of human chromosomes: Theoretical considerations and early experiences
19. Systematic screening of yeast artificial-chromosome libraries by use of the polymerase chain reaction
20. Physical mapping by STS hybridization: Algorithmic strategies and the challenge of software evaluation
21. Algorithms for computing and integrating physical maps using unique probes
22. Reconstructing order and distance in physical maps using nonoverlapping probes
23. The Neurospora crassa genome: Cosmid libraries sorted by chromosome
24. Hybridization fingerprinting in genome mapping and sequencing
25. SEGMAP: An interactive computer program for generating YAC-based STS-content maps
26. Construction of physical maps from oligonucleotide fingerprints data
27. Sequence ready - Or not?
28. Algorithms and software tools for ordering clone libraries: Application to mapping of the genome of Schizosaccharomyces pombe
29. CONTIG EXPLORER: Interactive marker-content map assembly
30. Random-clone strategy for genomic restriction mapping in yeast
31. Neurospora crassa genetic maps and mapped loci
32. In vitro reconstruction of the Aspergillus nidulans genome
33. An algorithm for the assembly of robust physical maps based on a combination of multi-level hybridization data and fingerprinting data
34. SAM: A system for iteratively building marker maps
35. FPC: A system for building contigs from restriction fingerprinted clones
36. Physical mapping of human chromosomes by repetitive sequence fingerprinting
37. Software for genome mapping by fingerprinting techniques
38. ContigMaker: Software tool for contig map construction
39. Using genetic algorithms to construct physical maps of chromosomes with unique probes
40. A new strategy for genome sequencing
41. A fast random cost algorithm for physical mapping