RAPD-PCR typing of Acinetobacter isolates from activated sludge systems designed to remove phosphorus microbiologically

Journal of Applied Microbiology

Volumn 90, Issue 3, 2001, Pages 309-319

  Carr, E ^a   Eason, H ^a   Feng, S ^a   Hoogenraad, A ^a   Croome, R ^a   Soddel, J ^a   Lindrea, K ^a   Seviour, R ^a  

^a LA TROBE UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATED SLUDGE PROCESS; BIOLOGICAL WATER TREATMENT; GENES; PHOSPHORUS;

'CURRENT; ACINETOBACTERS; ACTIVATED SLUDGE SYSTEMS; AGAROSE GEL; BIOLOGICAL PHOSPHORUS REMOVAL]; CLINICAL ISOLATES; ENVIRONMENTAL ISOLATES; GENOMICS; RAPD-PCR; TAXONOMIC STATUS;

GENOME;

PHOSPHORUS ACID DERIVATIVE;

ACINETOBACTER; ACTIVATED SLUDGE; ARTICLE; BACTERIAL GENETICS; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA FINGERPRINTING; GENOME; NONHUMAN; POLYMERASE CHAIN REACTION; SPECIES DIFFERENCE; STRAIN DIFFERENCE; TAXONOMY;

ACINETOBACTER; BACTERIA (MICROORGANISMS); NEGIBACTERIA;

EID: 0035104251     PISSN: 13645072     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2672.2001.01245.x     Document Type: Article

References (51)

1. Evaluation of different PCR-based DNA fingerprinting techniques for assessing the genetic variability of isolates of the fungus Epicoccum nigrum
2. Plasmid content evaluation of activated sludge
3. Polyphosphate accumulating abilities of Acinetobacter isolates obtained from a biological nutrient removal pilot plant
4. Genospecies diversity of Acinetobacter isolates obtained from a biological nutrient removal pilot plant of a modified UCT configuration
5. Acinetobacter spp. as nosocomial pathogens: Microbiological, clinical and epidemiological features
6. Phenotypic characterization of Acinetobacter strains of 13 DNA-DNA hybridization groups by means of the Biolog system
7. Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors
8. Identification of some of the major groups of bacteria in efficient and nonefficient biological phosphorus removal activated sludge systems
9. Taxonomy of the genus Acinetobacter with the recognition of Acinetobacter baumannii sp. nov., Acinetobacter haemolyticus sp. nov., Acinetobacter johnsonnii sp. nov. & Acinetobacter junii sp. nov. & emended description of Acinetobacter calcoaceticus and Acinetobacter lwoffii
10. Delineation of a new proteolytic species in the genus Acinetobacter
11. Metabolic transformations and characterization of the sludge community in an enhanced biological phosphorus removal system
12. Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantitation
13. Evaluation of amplified ribosomal DNA restriction analysis for identification of Acinetobacter genomic species
14. Enzymatic activity in the activated-sludge floc matrix
15. Ribotyping of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex
16. Acinetobacter in Denmark: I. Taxonomy, antiobiotic susceptibility and pathogenicity of 112 clinical strains
17. Acinetobacter in Denmark: II. Molecular studies of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex
18. Phenotypic characterization and antibiotic resistance of Acinetobacter spp. isolated from aquatic sources
19. Enrichment, phylogenetic analysis and detection of a bacterium that performs enhanced biological phosphate removal in activated sludge
20. Phylogenetic relationships of genus Acinetobacter
21. High resolution DNA fingerprinting of Acinetobacter outbreak strains
22. Comparison of ARDRA and recA-RFLP analysis for genomic species identification of Acinetobacter spp.
23. The applied microbiology of enhanced biological phosphate removal - Accomplishments and needs
24. Interspecies transformation of Acinetobacter: Genetic evidence for a ubiquitous genus
25. Numerical and chemotaxonomy of polyphosphate accumulating Acinetobacter strains with high polyphosphate:AMP phosphotransferase (PPAT) activity
26. Characterization of bacterial communities from activated sludge: Culture-dependant numerical identification versus in situ identification using group- and genus-specific rRNA-targeted oligonucleotide probes
27. Development of the microbial community of a full-scale biological nutrient removal activated sludge plant during start-up
28. Comparison of amplified ribosomal DNA restriction analysis, random amplified polymorphic DNA analysis and amplified fragment length polymorphism fingerprinting for identification of Acinetobacter genomic species and typing of Acinetobacter baumannii
29. Combination of fluorescent in situ hybridization and microautoradiography - A new tool for structure-function analyses in microbial ecology
30. Diversity of isolates of Acinetobacter from activated sludge systems based on their whole cell protein patterns
31. Microbiology and biochemistry of the enhanced biological phosphate removal process
32. Random amplified polymorphic DNA and amplified ribosomal DNA spacer polymorphism: Powerful methods to differentiate Streptococcus thermophilus strains
33. Natural transformation of Acinetobacter sp. strain BD413 with cell lysates of Acinetobacter sp., Pseudomonas fluorescens and Burkholderia cepacia in soil microcosms
34. Genomic species typing of Acinetobacters by polymerase chain reaction amplification of the recA gene
35. Characterization of enterotoxigenic Escherichia coli by random amplification of polymorphic DNA
36. The phylogenetic structure of the twenty-one DNA groups of the genus Acinetobacter as revealed by 16S ribosomal DNA sequence analysis
37. Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms
38. Phylogenetic analysis of proteolytic Acinetobacter strains based on the sequence of genes encoding aminoglycoside 6′-N- acetyltransferases
39. Phylogenetic analysis and in situ identification of bacteria in activated sludge
40. Phenotypic identification of non-clinical isolates of Acinetobacter species
41. Potential of three-way randomly amplified polymorphic DNA analysis as a typing method for twelve Salmonella serotypes
42. Clinical strains of Acinetobacter classified by DNA-DNA hybridisation
43. Comparison of ribotyping, randomly amplified polymorphic DNA analysis and pulsed-field gel electrophoresis in typing of Lactobacillus rhamnosus and L. casei strains
44. Identification of Acinetobacter genomic species by amplified ribosomal DNA restriction analysis
45. Oil-degrading Acinetobacter strain RAG-1 and strains described as Acinetobacter venetianus sp. nov. belong to the same genomic species
46. Optimization of the arbitraily-primed polymerase chain reaction (AP-PCR) from intra-species differentiation of Vibrio vulnificus
47. A comparative study of different PCR-based DNA fingerprinting techniques for typing of the Acinetobacter calcoaceticus - A. baumannii complex
48. Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge
49. Mutation as an origin of genetic variability in Helicobacter pylori
50. Characterization of Acinetobacter type strains and isolates obtained from wastewater treatment plants by PCR fingerprinting
51. Phylogenetic structures of the genus Acinetobacter based on gyrB sequences: Comparison with the grouping with DNA-DNA hybridization