Molecular evolution of duplicated amylase gene regions in Drosophila melanogaster: Evidence of positive selection in the coding regions and selective constraints in the cis-regulatory regions

Genetics

Volumn 157, Issue 2, 2001, Pages 667-677

  Araki, Hitoshi ^a   Inomata, Nobuyuki ^a   Yamazaki, Tsuneyuki ^a  

^a KYUSHU UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL DEHYDROGENASE; AMYLASE; MICROSATELLITE DNA;

ARTICLE; DNA FLANKING REGION; DNA POLYMORPHISM; DROSOPHILA MELANOGASTER; GENE DUPLICATION; MOLECULAR EVOLUTION; NATURAL SELECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

ALLELES; AMYLASES; ANIMALS; BLOTTING, SOUTHERN; DROSOPHILA; DROSOPHILA MELANOGASTER; ELECTROPHORESIS, POLYACRYLAMIDE GEL; EVOLUTION, MOLECULAR; GENE DUPLICATION; HAPLOTYPES; INTRONS; ISOENZYMES; MICROSATELLITE REPEATS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; VARIATION (GENETICS);

DROSOPHILA MELANOGASTER; DROSOPHILA SIMULANS; MELANOGASTER;

EID: 0035102250     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (63)

1. Genetic regulation of tissue-specific expression of amylase structural genes in Drosophila melanogaster
2. Crossing over in the chromosomal region determining amylase isozymes in Drosophila melanogaster
3. Molecular variation at the vermilion locus in geographically diverse populations of Drosophila melanogaster and D. simulans
4. Glucose repression of amylase gene expression in Drosophila melanogaster
5. The estimation of the number and the length distribution of gene conversion tracts from population DNA sequence data
6. The alpha-amylase gene in Drosophila melanogaster: Nucleotide sequence, gene structure and expression motifs
7. Functional redundancy: The respective roles of the two sloppy paired genes in Drosophila segmentation
8. Organization and structure of the amylase gene family
9. Amylase polymorphism in Drosophila melanogaster: Haplotype frequencies in tropical African and American populations
10. Genetic variation of Drosophila melanogaster natural populations
11. Environmental determination of selective significance or neutrality of amylase variants in Drosophila melanogaster
12. Amylase variants in Drosophila melanogaster: Linkage studies and characterization of enzyme extracts
13. Selection for amylase allozymes in Drosophila melanogaster: Some questions
14. Hitchhiking under positive Darwinian selection
15. Statistical tests of neutrality of mutations
16. SeqPup, biosequence editor and analysis platform
17. Microsatellite variation in North American populations of Drosophila melanogaster
18. A comprehensive study of genetic variation in natural populations of Drosophila melanogaster. IV. Mitochondrial DNA variation and the role of history vs. selection in the genetic structure of geographic populations
19. Selection for amylase allozymes in Drosophila melanogaster
20. The geographical pattern of an enzyme polymorphism in D. melanogaster
21. Concerted evolution of duplicated protein-coding genes in Drosophila
22. Estimating the recombination parameter of a finite population model without selection
23. A test of neutral molecular evolution based on nucleotide data
24. Estimation of levels of gene flow from DNA sequence data
25. Evolution of nucleotide substitutions and gene regulation in the amylase multigenes in Drosophila kikkawai and its sibling species
26. Evolution of the response pattern to dietary carbohydrates and the developmental differentiation of gene expression of α-amylase in Drosophila
27. Evolutionary relationships and sequence variation of α-amylase variants encoded by duplicated genes in the Amy locus of Drosophila melanogaster
28. Molecular evolution of the Amy multigenes in the subgenus Sophophora of Drosophila
29. An electrophoretic study on amylase in Drosophila melanogaster
30. A simple method for estimating evolutionary, rate of base substitutions through comparative studies of nucleotide sequences
31. Genetic localization and action of regulatory genes and elements for tissue-specific expression of α-amylase in Drosophila melanogaster
32. Excess polymorphism at the Adh locus in D. melanogaster
33. Inferring the histories of the Adh and Adh-dup loci in Drosophila melanogaster from patterns of polymorphism and divergence
34. Negative control of photoreceptor development in Drosophila by the product of the YAN gene, an ETS domain protein
35. Naturally occurring variation in the restriction map of the Amy region of Drosophila melanogaster
36. Molecular cloning of α-amylase genes from Drosophila melanogaster. II. Clone organization and verification
37. A short 5′-flanking region mediates glucose repression of Amylase gene expression in Drosophila melanogaster
38. Genetic analysis of natural populations of Drosophila metanogaster in Japan IV. Natural selection on the inducibility, but not on the structural genes, of Amylase loci
39. Adaptive protein evolution at the Adh locus in Drosophila
40. Intraspecific nuclear DNA variation in Drosophila
41. Allelic and non-allelic homology of a supergene family
42. Molecular evolution of the 5′-flanking regions of the duplicated Amy genes in Drosophila metanogaster species subgroup
43. Molecular analysis of the intergenic region of the duplicated Amy genes of Drosophila melanogaster and Drosophila teissieri
44. Population genetics of Drosophila amylase. IV. Selection in laboratory populations maintained on different carbohydrates
45. Population genetics of Drosophila amylase III. Interspecific variation
46. DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
47. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia
48. High mutation rate of a long microsatellite allele in Drosophila melanogaster provides evidence for allele-specific mutation rates
49. A comparative study of the enzymological features of α-amylase in the Drosophila melanogaster species subgroup
50. Molecular evolution of the duplicated Amy locus in the Drosophila melanogaster species subgroup: Concerted evolution only in the coding region and an excess of nonsynonymous substitutions in speciation
51. Genetic differentiation between geographically distant populations of Drosophila melanogaster
52. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
53. The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
54. TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
55. Recombination and the power of statistical tests of neutrality
56. Genetic and molecular analyses of P DNA elements sampled from natural populations of Drosophila melanogaster in Kenya
57. Genetic analysis of natural populations of Drosophila melanogaster in Japan. V. Genetic variabilities of amylase activities in different developmental stages and their relation to fitness
58. Genetic analysis of natural populations of Drosophila melanogaster in Japan. III. Genetic viability of amylase inducibility and fitness
59. Genetic analysis of natural populations of Drosophila melanogaster in Japan. I. Protein polymorphism, lethal gene, sterility, gene, inversion polymorphism, and linkage disequilibrium
60. Gene frequency changes at the α-amylase locus in experimental populations of Drosophila pseudoobscura