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Volumn 52, Issue 2, 2001, Pages 193-204

The interaction of protein structure, selection, and recombination on the evolution of the type-1 fimbrial major subunit (fimA) from Escherichia coli

Author keywords

Diversifying selection; Escherichia coli genetic variation; Surface protein

Indexed keywords

ADHESIN;

EID: 0035095812     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002390010148     Document Type: Article
Times cited : (35)

References (52)
  • 1
    • 0028797897 scopus 로고
    • Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
    • (1995) Genetics , vol.139 , pp. 1067-1076
    • Akashi, H.1
  • 2
    • 0032953881 scopus 로고    scopus 로고
    • Inferring the fitness effects of DNA mutations from polymorphism and divergence data: Statistical power to detect directional selection under stationarity and free recombination
    • (1999) Genetics , vol.151 , pp. 221-238
    • Akashi, H.1
  • 4
    • 0031685051 scopus 로고    scopus 로고
    • Diversifying selection governs sequence polymorphism in the major adhesion proteins fimaA, papA, and sfaA of Escherichia coli
    • (1998) J Mol Evol , vol.47 , pp. 258-267
    • Boyd, E.F.1    Hartl, D.L.2
  • 7
    • 0005730767 scopus 로고
    • Fimbriae
    • Neidhardt FC, Ingraham JL, Low KB, Magasanik B, Schaechter M, Umbarger HE (eds) Escherichia coli and Salmonella typhiurium cellular and molecular biology. American Society for Microbiology, Washington, DC
    • (1987) , pp. 84-90
    • Eisenstein, B.I.1
  • 10
    • 0029996162 scopus 로고    scopus 로고
    • Incorporation of non-local interactions in protein secondary structure prediction from the amino acid sequence
    • (1996) Protein Eng , vol.9 , pp. 133-142
    • Frishman, D.1    Argos, P.2
  • 11
    • 0029980416 scopus 로고    scopus 로고
    • New statistical tests of neutrality for DNA samples from a population
    • (1996) Genetics , vol.143 , pp. 557-570
    • Fu, Y.-X.1
  • 15
    • 0023612034 scopus 로고
    • Estimating the recombination parameter of a finite population model without selection
    • (1987) Genet Res , vol.50 , pp. 245-250
    • Hudson, R.R.1
  • 17
    • 0023764283 scopus 로고
    • Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection
    • (1988) Nature , vol.89 , pp. 167-170
    • Hughes, A.L.1    Nei, M.2
  • 18
    • 0025147562 scopus 로고
    • Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules
    • (1990) Mol Biol Evol , vol.7 , pp. 515-524
    • Hughes, A.L.1    Ota, T.2    Nei, M.3
  • 19
    • 0000938404 scopus 로고    scopus 로고
    • Bacterial adhesins and their assembly
    • Neidhardt FC, Curtis RR, Ingraham JL, Lin ECC, Low KB, Magasanik B, Reznikoff WS, Riley M, Schaechter M, Umbarger HE (eds) Escherichia coli and Salmonella typhiurium cellular and molecular biology. ASM Press, Washington, DC
    • (1996) , pp. 2730-2756
    • Hultgren, S.J.1    Jones, C.H.2    Normark, S.3
  • 20
    • 0014494672 scopus 로고
    • The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations
    • (1969) Genetics , vol.61 , pp. 893-903
    • Kimura, M.1
  • 21
    • 0019296687 scopus 로고
    • A simple method for estimating the evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 23
    • 0021754353 scopus 로고
    • The fimA gene encoding the type-1 fimbrial subunit of Escherichia coli
    • (1984) Eur J Biochem , vol.143 , pp. 395-399
    • Klemm, P.1
  • 25
    • 0020064078 scopus 로고
    • F7 and type I-like fimbriae from three Escherichia coli strains isolated from urinary tract infections: Protein chemical and immunological aspects
    • (1982) Infect Immun , vol.36 , pp. 462-468
    • Klemm, P.1    Ørskov, I.2    Ørskov, F.3
  • 26
    • 0027905006 scopus 로고
    • Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila
    • (1993) Science , vol.260 , pp. 91-95
    • Long, M.1    Langley, C.H.2
  • 28
    • 0029896206 scopus 로고    scopus 로고
    • Analysis of the fim cluster of an avian 02 strain of Escherichia coli: Serogroup-specific sites within fimA and nucleotide sequence of fimI
    • (1996) J Med Microbiol , vol.44 , pp. 444-452
    • Marc, D.1    Dho-Moulin, M.2
  • 32
    • 0031972161 scopus 로고    scopus 로고
    • Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
    • (1998) Genetics , vol.148 , pp. 929-936
    • Nielsen, R.1    Yang, Z.2
  • 33
    • 0021964561 scopus 로고
    • Nucleotide sequence of pilA, the gene encoding the structural component of type 1 pili in Escherichia coli
    • (1985) J Bacteriol , vol.162 , pp. 454-457
    • Orndorff, P.E.1    Falkow, S.2
  • 40
    • 0001292973 scopus 로고
    • Genetic Structure and variation in natural populations of Escherichia coli
    • Neidhardt FC, Ingraham JL, Low KB, Magasanik B, Schaechter M, Umbarger HE (eds) Escherichia coli and Salmonella typhiurium cellular and molecular biology. American Society for Microbiology, Washington, DC
    • (1987) , pp. 1625-1648
    • Selander, R.K.1    Caugant, D.A.2    Whittam, T.S.3
  • 41
    • 0023650543 scopus 로고
    • The codon adaptation index - A measure of directional synonymous codon usage bias, and its potential applications
    • (1987) Nucleic Acids Res , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.-H.2
  • 45
    • 0022410317 scopus 로고
    • Statistical methods of DNA sequence analysis: Detection of intragenic recombination or gene conversion
    • (1985) Mol Biol Evol , vol.2 , pp. 539-556
    • Stephens, J.C.1
  • 47
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 48
    • 0002747469 scopus 로고
    • Measurement of DNA polymorphism
    • Takahata N, Clark AG (eds) Mechanisms of molecular evolution. Sinauer Associates, Sunderland, MA
    • (1993) , pp. 37-59
    • Tajima, F.1
  • 51
    • 0001620789 scopus 로고    scopus 로고
    • Genetics variation and evolutionary processes in natural populations of Escherichia coli
    • Neidhardt FC (ed) Escherichia coli and Salmonella typhiurium cellular and molecular biology. American Society for Microbiology, Washington, DC
    • (1996) , pp. 2708-2720
    • Whittam, T.S.1
  • 52
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • (1997) Comp Appl Biol Sci , vol.13 , pp. 555-556
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.