MAC5: Bayesian inference of phylogenetic trees from DNA sequences incorporating gaps

Bioinformatics

Volumn 17, Issue 5, 2001, Pages 479-480

  McGuire, Gráinne ^a   Denham, Michael C ^a   Balding, David J ^a  

^a UNIVERSITY OF READING   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE;

BAYES THEOREM; COMPUTER PROGRAM; CONTROLLED STUDY; DNA DETERMINATION; DNA SEQUENCE; EVOLUTION; INTERNET; MODEL; NOTE; PHYLOGENY; PRIORITY JOURNAL; SAMPLING;

EID: 0035020215     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/17.5.479     Document Type: Note

References (10)

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3. Felsenstein, J. (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol., 17, 368-376.
4. Felsenstein, J. (1993) Phylip, Version 3.5c. University of Washington, Seattle, http://www.evolution.genetics.washington.edu/ phylip.html.
5. Felsenstein, J. and Churchill, G.A. (1996) A Hidden Markov Model approach to variation among sites in rate of evolution. Mol. Biol. Evol., 13, 93-104.
6. Jukes, T.H. and Cantor, C.R. (1969) Evolution of protein molecules. In Munro, H.N. (ed.), Mammalian Protein Metabolism. Academic Press, New York, pp. 21-132.
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8. McGuire, G., Denham, M.C. and Balding, D.J. (2001) Models of sequence evolution for DNA sequences containing gaps. Mol. Biol. Evol., in press.
9. Simon, D.L. and Larget, B. (2000) Bambe, Version 2.02 beta. Duquesne University, Pittsburgh, http://www.mathcs.duq.edu/ larget/bambe.html.
10. Whelan, S. and Goldman, N. (1999) Distributions of statistics used for the comparison of models of sequence evolution in phylogenetics. Mol. Biol. Evol., 16, 1292-1299.