Constructing smooth potential functions for protein folding

Journal of Molecular Graphics and Modelling

Volumn 19, Issue 1, 2001, Pages 87-93

  Crippen, Gordon M ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

Author keywords

Barnase; Free energy of protein folding; Protein folding; Urea denaturation

Indexed keywords

ATOMS; CONFORMATIONS; HYDROGEN; PROTEINS;

PROTEIN FOLDING;

MOLECULAR GRAPHICS;

BARNASE; PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CRYSTAL STRUCTURE; MOLECULAR INTERACTION; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STABILITY; SURFACE PROPERTY;

MATHEMATICS; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEINS; RIBONUCLEASES;

EID: 0035002440     PISSN: 10933263     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1093-3263(00)00132-7     Document Type: Article

References (16)

1. Effective energy functions for protein structure prediction
2. Straightening Euclidean invariants
3. Merck molecular force field I
4. Size-independent comparison of protein three-dimensional structures
5. Determining contact energy function for continuous state models of globular protein conformations
6. Potential energy function for continuous state models of globular proteins
7. Structure optimization combining soft-core interaction functions, the diffusion equation method, and molecular dynamics
8. Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading
9. Disulfide recognition in an optimized threading potential
10. Protein fold recognition without Boltzmann statistics or explicit physical basis
11. Easily searched protein folding potentials
12. Excluded volume approximation to protein-solvent interaction. The solvent contact model
13. The folding of an enzyme II. Substructure of barnase and the contribution of different interactions to protein stability
14. Thermodynamics of barnase unfolding
15. Enumeration of cubic lattice walks by contact class