메뉴 건너뛰기




Volumn 40, Issue 3, 2001, Pages 520-529

Understanding the enzymology of archaeal DNA replication: Progress in form and function

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; DNA POLYMERASE; DNA PRIMASE; GENE PRODUCT; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; REPLICATION FACTOR C;

EID: 0034999673     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.2001.02390.x     Document Type: Short Survey
Times cited : (20)

References (44)
  • 1
    • 0032529457 scopus 로고    scopus 로고
    • Phosphoesterase domains associated with DNA polymerases of diverse origins
    • Aravind, L., and Koonin, E.V. (1998) Phosphoesterase domains associated with DNA polymerases of diverse origins. Nucleic Acids Res 26: 3746-3752.
    • (1998) Nucleic Acids Res , vol.26 , pp. 3746-3752
    • Aravind, L.1    Koonin, E.V.2
  • 2
    • 0034015798 scopus 로고    scopus 로고
    • Altered patterns of cellular growth, morphology, replication and division in conditional-lethal mutants of the thermophilic archaeon Sulfolobus acidocaldarius
    • Bernander, R., Poplawski, A., and Grogan, D.W. (2000) Altered patterns of cellular growth, morphology, replication and division in conditional-lethal mutants of the thermophilic archaeon Sulfolobus acidocaldarius. Microbiology 146: 749-757.
    • (2000) Microbiology , vol.146 , pp. 749-757
    • Bernander, R.1    Poplawski, A.2    Grogan, D.W.3
  • 3
    • 17044446557 scopus 로고    scopus 로고
    • Cloning, expression, and characterization of DNA polymerase I from the hyperthermophilic archaea Thermococcus fumicolans
    • Cambon-Bonavita, M.A., Schmitt, P., Zieger, M., Flaman, J.M., Lesongeur, F., Raguenes, G., et al. (2000) Cloning, expression, and characterization of DNA polymerase I from the hyperthermophilic archaea Thermococcus fumicolans. Extremophiles 4: 215-225.
    • (2000) Extremophiles , vol.4 , pp. 215-225
    • Cambon-Bonavita, M.A.1    Schmitt, P.2    Zieger, M.3    Flaman, J.M.4    Lesongeur, F.5    Raguenes, G.6
  • 4
    • 0032814005 scopus 로고    scopus 로고
    • Archaeal DNA replication: Identifying the pieces to solve a puzzle
    • Cann, I.K., and Ishino, Y. (1999) Archaeal DNA replication: identifying the pieces to solve a puzzle. Genetics 4: 1249-1267.
    • (1999) Genetics , vol.4 , pp. 1249-1267
    • Cann, I.K.1    Ishino, Y.2
  • 5
    • 0032564361 scopus 로고    scopus 로고
    • A heterodimeric DNA polymerase: Evidence that members of the Euryarchaeota possess a distinct DNA polymerase
    • Cann, I.K., Komori, K., Toh, H., Kanai, S., and Ishino, Y. (1998) A heterodimeric DNA polymerase: evidence that members of the Euryarchaeota possess a distinct DNA polymerase. Proc Natl Acad Sci USA 95: 14250-14255.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14250-14255
    • Cann, I.K.1    Komori, K.2    Toh, H.3    Kanai, S.4    Ishino, Y.5
  • 6
    • 0032745320 scopus 로고    scopus 로고
    • Functional interactions of a homolog of proliferating cell nuclear antigen with DNA polymerases in Archaea
    • Cann, I.K., Ishino, S., Hayashi, I., Komori, K., Toh, H., Morikawa, K., and Ishino, Y. (1999a) Functional interactions of a homolog of proliferating cell nuclear antigen with DNA polymerases in Archaea. J Bacteriol 181: 6591-6599.
    • (1999) J Bacteriol , vol.181 , pp. 6591-6599
    • Cann, I.K.1    Ishino, S.2    Hayashi, I.3    Komori, K.4    Toh, H.5    Morikawa, K.6    Ishino, Y.7
  • 7
    • 0032875628 scopus 로고    scopus 로고
    • Two family B DNA polymerases from Aeropyrum pernix, an aerobic hyperthermophilic crenarchaeote
    • Cann, I.K., Ishino, S., Nomura, N., Sako, Y., and Ishino, Y. (1999b) Two family B DNA polymerases from Aeropyrum pernix, an aerobic hyperthermophilic crenarchaeote. J Bacteriol 181: 5984-5992.
    • (1999) J Bacteriol , vol.181 , pp. 5984-5992
    • Cann, I.K.1    Ishino, S.2    Nomura, N.3    Sako, Y.4    Ishino, Y.5
  • 8
    • 0344541947 scopus 로고    scopus 로고
    • Novel homologs of replication protein A in Archaea: Implications for the evolution of ssDNA-binding proteins
    • Chedin, F., Seitz, E.M., and Kowalczykowski, S.C. (1998) Novel homologs of replication protein A in Archaea: implications for the evolution of ssDNA-binding proteins. Trends Biochem Sci 23: 273-277.
    • (1998) Trends Biochem Sci , vol.23 , pp. 273-277
    • Chedin, F.1    Seitz, E.M.2    Kowalczykowski, S.C.3
  • 9
    • 0034652354 scopus 로고    scopus 로고
    • A double-hexamer archaeal minichromosome maintenance protein is an ATP-dependent DNA helicase
    • Chong, J.P., Hayashi, M.K., Simon, M.N., Xu, R.M., and Stillman, B. (2000) A double-hexamer archaeal minichromosome maintenance protein is an ATP-dependent DNA helicase. Proc Natl Acad Sci USA 97: 1530-1535.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 1530-1535
    • Chong, J.P.1    Hayashi, M.K.2    Simon, M.N.3    Xu, R.M.4    Stillman, B.5
  • 10
    • 0344994570 scopus 로고    scopus 로고
    • Two DNA polymerase sliding clamps from the thermophilic archaeon Sulfolobus solfataricus
    • De Felice, M., Sensen, C.W., Charlebois, R.L., Rossi, M., and Pisaniu, F.M. (1999) Two DNA polymerase sliding clamps from the thermophilic archaeon Sulfolobus solfataricus. J Mol Biol 291: 47-57.
    • (1999) J Mol Biol , vol.291 , pp. 47-57
    • De Felice, M.1    Sensen, C.W.2    Charlebois, R.L.3    Rossi, M.4    Pisaniu, F.M.5
  • 11
    • 0033571525 scopus 로고    scopus 로고
    • Identification and characterization of a DNA primase from the hyperthermophilic archaeon Methanococcus jannaschii
    • Desogus, G., Onesti, S., Brick, P., Rossi, M., and Pisani, F.M. (1999) Identification and characterization of a DNA primase from the hyperthermophilic archaeon Methanococcus jannaschii. Nucleic Acids Res 27: 4444-4450.
    • (1999) Nucleic Acids Res , vol.27 , pp. 4444-4450
    • Desogus, G.1    Onesti, S.2    Brick, P.3    Rossi, M.4    Pisani, F.M.5
  • 12
    • 0031587829 scopus 로고    scopus 로고
    • Archaea and the origin(s) of DNA replication proteins
    • Edgell, D.R., and Doolittle, W.F. (1997) Archaea and the origin(s) of DNA replication proteins. Cell 89: 995-998.
    • (1997) Cell , vol.89 , pp. 995-998
    • Edgell, D.R.1    Doolittle, W.F.2
  • 13
    • 0033572698 scopus 로고    scopus 로고
    • Specific interaction between DNA polymerase II (PolD) and RadB, a Rad51/Dmc1 homolog in Pyrococcus furiosus
    • Hayashi, I., Morikawa, K., and Ishino, Y. (1999) Specific interaction between DNA polymerase II (PolD) and RadB, a Rad51/Dmc1 homolog in Pyrococcus furiosus. Nucleic Acids Res 27: 4695-4702.
    • (1999) Nucleic Acids Res , vol.27 , pp. 4695-4702
    • Hayashi, I.1    Morikawa, K.2    Ishino, Y.3
  • 16
    • 0032475933 scopus 로고    scopus 로고
    • Structure of the DNA repair and replication endonuclease and exonuclease FEN-1: Coupling DNA and PCNA binding to FEN-1 activity
    • Hosfield, D.J., Mol, C.D., Shen, B., and Tainer, J.A. (1998) Structure of the DNA repair and replication endonuclease and exonuclease FEN-1: coupling DNA and PCNA binding to FEN-1 activity. Cell 95: 135-146.
    • (1998) Cell , vol.95 , pp. 135-146
    • Hosfield, D.J.1    Mol, C.D.2    Shen, B.3    Tainer, J.A.4
  • 17
    • 0035169689 scopus 로고    scopus 로고
    • Crystal structure of a DNA-dependent RNA polymerase (DNA primase)
    • Huber, R., Kaiser, J.T., and Augustin, M.A. (2001) Crystal structure of a DNA-dependent RNA polymerase (DNA primase). Nat Struct Biol 8: 57-61.
    • (2001) Nat Struct Biol , vol.8 , pp. 57-61
    • Huber, R.1    Kaiser, J.T.2    Augustin, M.A.3
  • 19
    • 0031922356 scopus 로고    scopus 로고
    • A novel DNA polymerase family found in Archaea
    • Ishino, Y., Komori, K., Cann, I.K.O., and Koga, Y. (1998) A novel DNA polymerase family found in Archaea. J Bacteriol 180: 2232-2236.
    • (1998) J Bacteriol , vol.180 , pp. 2232-2236
    • Ishino, Y.1    Komori, K.2    Cann, I.K.O.3    Koga, Y.4
  • 20
    • 0032409981 scopus 로고    scopus 로고
    • Indentification and characterization of a single-stranded DNA-binding protein from the archaeon Methanococcus jannaschii
    • Kelly, T.J., Simancek, P., and Brush, G.S. (1998) Indentification and characterization of a single-stranded DNA-binding protein from the archaeon Methanococcus jannaschii. Proc Natl Acad Sci USA 95: 14634-14639.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14634-14639
    • Kelly, T.J.1    Simancek, P.2    Brush, G.S.3
  • 21
    • 0034629109 scopus 로고    scopus 로고
    • A unique organization of the protein subunits of the DNA polymerase clamp loader in the archaeon Methanobacterium thermoautotrophicum δH
    • Kelman, Z., and Hurwitz, J. (2000) A unique organization of the protein subunits of the DNA polymerase clamp loader in the archaeon Methanobacterium thermoautotrophicum ΔH. J Biol Chem 275: 7327-7336.
    • (2000) J Biol Chem , vol.275 , pp. 7327-7336
    • Kelman, Z.1    Hurwitz, J.2
  • 22
    • 0033593053 scopus 로고    scopus 로고
    • The single minichromosome maintenance protein of Methanobacterium thermoautotrophicum δH contains DNA helicase activity
    • Kelman, Z., Lee, J.K., and Hurwitz, J. (1999a) The single minichromosome maintenance protein of Methanobacterium thermoautotrophicum ΔH contains DNA helicase activity. Proc Natl Acad Sci USA 96: 14783-14788.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 14783-14788
    • Kelman, Z.1    Lee, J.K.2    Hurwitz, J.3
  • 23
    • 0033214481 scopus 로고    scopus 로고
    • Isolation and characterization of a split B-type DNA polymerase from the archaeon Methanobacterium thermoautotrophicum δH
    • Kelman, Z., Pietrokovski, S., and Hurwitz, J. (1999b) Isolation and characterization of a split B-type DNA polymerase from the archaeon Methanobacterium thermoautotrophicum ΔH. J Biol Chem 274: 28751-28761.
    • (1999) J Biol Chem , vol.274 , pp. 28751-28761
    • Kelman, Z.1    Pietrokovski, S.2    Hurwitz, J.3
  • 24
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • Kraulis, P.J. (1991) MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J Appl Cryst 24: 946-950.
    • (1991) J Appl Cryst , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 25
    • 0033199713 scopus 로고    scopus 로고
    • Did DNA replication evolve twice independently?
    • Leipe, D.D., Aravind, L., and Koonin, E.V. (1999) Did DNA replication evolve twice independently? Nucleic Acids Res 27: 3389-3401.
    • (1999) Nucleic Acids Res , vol.27 , pp. 3389-3401
    • Leipe, D.D.1    Aravind, L.2    Koonin, E.V.3
  • 26
    • 0033634866 scopus 로고    scopus 로고
    • Structure and function of Cdc6/Cdc18: Implications for origin recognition and checkpoint control
    • Llu, J., Smith, C.L., DeRyckere, D., DeAngelis, K., Martin, G.S., and Berger, J.M. (2000) Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control. Mol Cell 6: 637-648.
    • (2000) Mol Cell , vol.6 , pp. 637-648
    • Llu, J.1    Smith, C.L.2    DeRyckere, D.3    DeAngelis, K.4    Martin, G.S.5    Berger, J.M.6
  • 27
    • 0002017094 scopus 로고    scopus 로고
    • Chromosomal DNA replication in yeast: Enzymes and mechanisms
    • Fantes, P. and Beggs, J. (eds). Oxford: IRL Press
    • MacNeill, S.A., and Burgers, P.M.J. (2000) Chromosomal DNA replication in yeast: enzymes and mechanisms. In Frontiers in Molecular Biology: the Yeast Nucleus. Fantes, P. and Beggs, J. (eds). Oxford: IRL Press, pp. 19-57.
    • (2000) Frontiers in Molecular Biology: The Yeast Nucleus , pp. 19-57
    • MacNeill, S.A.1    Burgers, P.M.J.2
  • 28
    • 0032766490 scopus 로고    scopus 로고
    • Comparative genomics of the Archaea (Euryarchaeota): Evolution of conserved protein families, the stable core, and the variable shell
    • Makarova, K.S., Aravind, L., Galperin, M.Y., Grishin, N.V., Tatusov, R.L., Wolf, Y.I., and Koonin, E.V. (1999) Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. Genome Res 9: 608-628.
    • (1999) Genome Res , vol.9 , pp. 608-628
    • Makarova, K.S.1    Aravind, L.2    Galperin, M.Y.3    Grishin, N.V.4    Tatusov, R.L.5    Wolf, Y.I.6    Koonin, E.V.7
  • 30
    • 0030815133 scopus 로고    scopus 로고
    • Raster3D: Photorealistic molecular graphics
    • Merrit, E.A., and Bacon, D.J. (1997) Raster3D: Photorealistic Molecular Graphics. Methods Enzymol 277: 505-524.
    • (1997) Methods Enzymol , vol.277 , pp. 505-524
    • Merrit, E.A.1    Bacon, D.J.2
  • 32
    • 0034572821 scopus 로고    scopus 로고
    • Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)
    • Natale, D.A., Shankavaram, U.T., Galperin, M.Y., Wolf, Y.I., Aravind, L., and Koonin, E.V. (2000) Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs). Genome Biol 1: 1-19.
    • (2000) Genome Biol , vol.1 , pp. 1-19
    • Natale, D.A.1    Shankavaram, U.T.2    Galperin, M.Y.3    Wolf, Y.I.4    Aravind, L.5    Koonin, E.V.6
  • 33
    • 0032969563 scopus 로고    scopus 로고
    • AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes
    • Neuwald, A.F., Aravind, L., Spouge, J.L., and Koonin, E.V. (1999) AAA+: a class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 9: 27-43.
    • (1999) Genome Res , vol.9 , pp. 27-43
    • Neuwald, A.F.1    Aravind, L.2    Spouge, J.L.3    Koonin, E.V.4
  • 35
    • 0031578798 scopus 로고    scopus 로고
    • Cloning and characterisation of a thermostable alpha-DNA polymerase from the hyperthermophilic archaeon Thermococcus sp. TY
    • Niehaus, F., Frey, B., and Antranikian, G. (1997) Cloning and characterisation of a thermostable alpha-DNA polymerase from the hyperthermophilic archaeon Thermococcus sp. TY. Gene 204: 153-158.
    • (1997) Gene , vol.204 , pp. 153-158
    • Niehaus, F.1    Frey, B.2    Antranikian, G.3
  • 36
    • 0032498234 scopus 로고    scopus 로고
    • Splicing of inteins and hedgehog autoproteolysis: Structure, function, and evolution
    • Perler, F.B. (1998) Splicing of inteins and hedgehog autoproteolysis: structure, function, and evolution. Cell 92: 1-4.
    • (1998) Cell , vol.92 , pp. 1-4
    • Perler, F.B.1
  • 37
    • 0034604383 scopus 로고    scopus 로고
    • Biochemical characterization of a clamp-loader complex homologous to eukaryotic replication factor C from the hyperthermophilic archaeon Sulfolobus solfataricus
    • Pisani, F.M., De Felice, M., Carpentieri, F., and Rossi, M. (2000) Biochemical characterization of a clamp-loader complex homologous to eukaryotic replication factor C from the hyperthermophilic archaeon Sulfolobus solfataricus. J Mol Biol 301: 61-73.
    • (2000) J Mol Biol , vol.301 , pp. 61-73
    • Pisani, F.M.1    De Felice, M.2    Carpentieri, F.3    Rossi, M.4
  • 38
    • 0034595517 scopus 로고    scopus 로고
    • Crystal structure of a pol alpha family DNA polymerase from the hyperthermophilic archaeon Thermococcus sp. 9° N-7
    • Rodriguez, A.C., Park, H.W., Mao, C., and Beese, L.S. (2000) Crystal structure of a pol alpha family DNA polymerase from the hyperthermophilic archaeon Thermococcus sp. 9° N-7. J Mol Biol 299: 447-462.
    • (2000) J Mol Biol , vol.299 , pp. 447-462
    • Rodriguez, A.C.1    Park, H.W.2    Mao, C.3    Beese, L.S.4
  • 39
    • 0034686021 scopus 로고    scopus 로고
    • The intrinsic DNA helicase activity of Methanobacterium thermoautotrophicum δH minichromosome maintenance protein
    • Shechter, D.F., Ying, C.Y., and Gautier, J. (2000) The intrinsic DNA helicase activity of Methanobacterium thermoautotrophicum ΔH minichromosome maintenance protein. J Biol Chem 275: 15049-15059.
    • (2000) J Biol Chem , vol.275 , pp. 15049-15059
    • Shechter, D.F.1    Ying, C.Y.2    Gautier, J.3
  • 40
    • 0032077438 scopus 로고    scopus 로고
    • Flap endonuclease homologs in archaebacteria exist as independent proteins
    • Shen, B., Qiu, J., Hosfield, D., and Tainer, J.A. (1998) Flap endonuclease homologs in archaebacteria exist as independent proteins. Trends Biochem Sci 23: 171-173.
    • (1998) Trends Biochem Sci , vol.23 , pp. 171-173
    • Shen, B.1    Qiu, J.2    Hosfield, D.3    Tainer, J.A.4
  • 41
    • 0034209827 scopus 로고    scopus 로고
    • Characterisation of an ATP-dependent DNA ligase from the thermophilic archaeon Methanobacterium thermoautotrophicum
    • Sriskanda, V., Kelman, Z., Hurwitz, J., and Shuman, S. (2000) Characterisation of an ATP-dependent DNA ligase from the thermophilic archaeon Methanobacterium thermoautotrophicum. Nucleic Acids Res 28: 2221-2228.
    • (2000) Nucleic Acids Res , vol.28 , pp. 2221-2228
    • Sriskanda, V.1    Kelman, Z.2    Hurwitz, J.3    Shuman, S.4
  • 42
    • 0032881250 scopus 로고    scopus 로고
    • MCM proteins in DNA replication
    • Tye, B.K. (1999) MCM proteins in DNA replication. Annu Rev Biochem 68: 649-686.
    • (1999) Annu Rev Biochem , vol.68 , pp. 649-686
    • Tye, B.K.1
  • 43
    • 0031196901 scopus 로고    scopus 로고
    • A novel DNA polymerase in the hyperthermophilic archaeon, Pyrococcus furiosus: Gene cloning, expression and characterisation
    • Uemori, T., Sato, Y., Kato, I., Doi, H., and Ishino, Y. (1997) A novel DNA polymerase in the hyperthermophilic archaeon, Pyrococcus furiosus: gene cloning, expression and characterisation. Genes Cells 2: 499-512.
    • (1997) Genes Cells , vol.2 , pp. 499-512
    • Uemori, T.1    Sato, Y.2    Kato, I.3    Doi, H.4    Ishino, Y.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.