Comparative analysis of human 19p12-13 region in Fugu and mouse

Mammalian Genome

Volumn 12, Issue 6, 2001, Pages 478-483

  Clarke, Denise ^a   Elgar, Greg ^a   Clark, Melody S ^a  

^a UK HGMP Resource Centre   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; RNA HELICASE; ZINC FINGER PROTEIN;

CHROMOSOME 19P; COMPARATIVE STUDY; CONFERENCE PAPER; CONTROLLED STUDY; COSMID; EVOLUTION; FISH; GENOME; HUMAN; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; ANIMALS; CHROMOSOMES, HUMAN, PAIR 19; COSMIDS; DATABASES, FACTUAL; EVOLUTION, MOLECULAR; FISHES; GENETIC MARKERS; HUMANS; LINKAGE (GENETICS); MICE; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; SEQUENCE HOMOLOGY, AMINO ACID; SOFTWARE;

EID: 0034995979     PISSN: 09388990     EISSN: None     Source Type: Journal    
DOI: 10.1007/s003350030004     Document Type: Article

References (13)

1. Aparicio S, Morrison A, Gould A, Gilthorpe J, Chaudhuri C et al. (1995) Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes. Proc Natl Acad Sci USA 92, 1684-1688
2. Applequist SE, Selg M, Raman C, Jack HM (1997) Cloning and characterization of HUPF1, a human homolog of the Saccharomyces cerevisiae nonsense mRNA-reducing UPF1 protein. Nucleic Acids Res 25, 814-821
3. Bonfield JK, Smith K, Staden R (1995) A new DNA sequence assembly program. Nucleic Acids Res 23, 4992-4999
4. Brenner S, Elgar G, Sandford R, Macrae A, Venkatesh B, Aparicio S (1993) Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome. Nature 366, 265-268
5. Brunner B, Todt T, Lenzner S, Stout K, Schulz U et al. (1999) Genomic structure and comparative analysis of nine Fugu genes: conservation of synteny with human chromosome Xp22.2-p22.1. Genome Res 9, 437-448
6. Elgar G, Clark MS, Meek S, Smith S, Warner S et al. (1999) Generation and analysis of 25 Mb of genomic DNA from the pufferfish Fugu rubripes by sequence scanning. Genome Res 9, 960-971
7. Gellner K, Brenner S (1999) Analysis of 148 kb of genomic DNA around the wnt1 locus of Fugu rubripes. Genome Res 9, 251-258
8. Gilley J, Fried M (1999) Extensive gene order differences within regions of conserved synteny between the Fugu and human genomes: implications for chromosomal evolution and the cloning of disease genes. Hum Mol Genet 8, 1313-1320
9. Higgins DG, Bleasby AJ, Fuchs R (1992) CLUSTAL V: improved software for multiple sequence alignment. Comput Appl Biosci 8, 189-191
10. Miles C, Elgar G, Coles E, Kleinjan DJ, van Heyningen V, Hastie N (1998) Complete sequencing of the Fugu WAGR region from WT1 to PAX6: dramatic compaction and conservation of synteny with human chromosome 11p13. Proc Natl Acad Sci USA 95, 13068-13072
11. Morlang S, Weglohner W, Franceschi F (1999) Hera from Thermus thermophilus: the first thermostable DEAD-box helicase with an RNase P protein motif. J Mol Biol 294, 795-805
12. Patthy L (1999) Genome evolution and the evolution of exon-shuffling - a review. Gene 238, 103-114
13. Tharun S, He W, Mayes AE, Lennertz P, Beggs JD, Parker R (2000) Yeast Sm-like proteins function in mRNA decapping and decay. Nature 404, 515-518