A comprehensive characterization of a group IB intron and its encoded maturase reveals that protein-assisted splicing requires an almost intact intron RNA

Journal of Molecular Biology

Volumn 308, Issue 4, 2001, Pages 609-622

  Geese, William J ^a   Waring, Richard B ^a  

^a Temple University   (United States)

Author keywords

Catalytic RNA; Group I intron; Homing endonuclease; RNA binding protein; RNA folding

Indexed keywords

DEOXYRIBONUCLEASE;

ARTICLE; ASPERGILLUS NIDULANS; BINDING AFFINITY; INTRON; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN PROCESSING; RNA BINDING; RNA STRUCTURE;

ASPERGILLUS; EMERICELLA NIDULANS;

EID: 0034972429     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2001.4609     Document Type: Article

References (48)

1. Structure of the S15, S6, S18-rRNA complex: Assembly of the 30 S ribosome central domain
2. A protein required for splicing group I introns in Neurospora mitochondria is mitochondrial tyrosyl-tRNA synthetase or a derivative thereof
3. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
4. Deletion of P9 and stem-loop structures downstream from the catalytic core affects both 5′ and 3′ splicing activities in a group-I intron
5. A tyrosyl-tRNA synthetase protein induces tertiary folding of the group I intron catalytic core
6. Crystal structure of a group I ribozyme domain: Principles of RNA packing
7. Self-splicing of group I introns
8. Function of tyrosyl-tRNA synthetase in splicing group I introns: An induced-fit model for binding to the P4-P6 domain based on analysis of mutations at the junction of the P4-P6 stacked helices
9. Frequent use of the same tertiary motif by self-folding RNAs
10. Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection: Comparison with in vivo evolution
11. Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of the HNH family
12. Protein-RNA recognition
13. Assembly of an exceptionally stable RNA tertiary interface in a group I ribozyme
14. RNA binding strategies of ribosomal proteins
15. Crystal structure of PI-Scel, a homing endonuclease with protein splicing activity
16. Group I introns as mobile genetic elements: Facts and mechanistic speculations - A review
17. Deletion-tolerance and trans-splicing of the bacteriophage T4 td intron. Analysis of the P6-L6a region
18. Binding of the CBP2 protein to a yeast mitochondrial group I intron requires the catalytic core of the RNA
19. A preorganized active site in the crystal structure of the Tetrahymena ribozyme
20. A tyrosyl-tRNA synthetase binds specifically to the group I intron catalytic core
21. Structural analysis of the Neurospora mitochondrial large rRNA intron and construction of a mini-intron that shows protein-dependent splicing
22. The structure of I-CreI, a Group I intron-encoded homing endonuclease
23. The maturase encoded by a group I intron from Aspergillus nidulans stabilizes RNA tertiary structure and promotes rapid splicing
24. A protein encoded by a group I intron in Aspergillus nidulans directly assists RNA splicing and is a DNA endonuclease
25. Self-splicing activity of the mitochondrial group-I introns from Aspergillus nidulans and related introns from other species
26. Catalytic activity is retained in the Tetrahymena group I intron despite removal of the large extension of element P5
27. DNA recognition and cleavage by the LAGLIDADG homing endonuclease I- CreI
28. Introns as mobile genetic elements
29. Group I and group II ribozymes as RNPs: Clues to the past and guides to the future
30. Sequence of intron and flanking exons in wild-type and box3 mutants of cytochrome b reveals an interlaced splicing protein coded by an intron
31. New loop-loop tertiary interactions in self-splicing introns of sub-group IC and ID: A complete 3D model of the Tetrahymena thermophila ribozyme
32. Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
33. A tyrosyl-tRNA synthetase can function similarly to an RNA structure in the Tetrahymena ribozyme
34. GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain
35. The effect of long-range loop-loop interactions on folding of the Tetrahymena self-splicing RNA
36. Fast folding of a ribozyme by stabilizing core interactions: Evidence for multiple folding pathways in RNA
37. Fast folding mutants of the Tetrahymena group I ribozyme reveal a rugged folding energy landscape
38. 2+ concentration for kinetic folding of the Tetrahymena ribozyme
39. Analysis of the CYT-18 protein binding site at the junction of stacked helices in a group I intron RNA by quantitative binding assays and in vitro selection
40. Protein-induced folding of a group I intron in cytochrome b pre- mRNA
41. Crystal structure of the thermostable archaeal intron-encoded endonuclease I-DmoI
42. Reconstitution of a group I intron self-splicing reaction with an activator RNA
43. Visualization of a tertiary structural domain of the Tetrahymena group I intron by electron microscopy
44. A reverse transcriptase/maturase promotes splicing by binding at its own coding segment in a group II intron RNA
45. Efficient protein-facilitated splicing of the yeast mitochondrial bI5 intron
46. Assembly of a ribonucleoprotein catalyst by tertiary structure capture
47. RNA recognition by arginine-rich peptide motifs