Microsatellite variation in the yellowhammer Emberiza citrinella: Population structure of a declining farmland bird

Molecular Ecology

Volumn 10, Issue 7, 2001, Pages 1633-1644

  Lee, Patricia L M ^a,d   Bradbury, Richard B ^a   Wilson, Jeremy D ^a,b   Flanagan, Nicola S ^a,c   Richardson, Lynne ^a   Perkins, Allan J ^a   Krebs, John R ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b RSPB CENTRE FOR CONSERVATION SCIENCE   (United Kingdom)

^c UNIVERSITY OF PUERTO RICO RIO PIEDRAS   (Puerto Rico)

^d SWANSEA UNIVERSITY   (United Kingdom)

Author keywords

Aves; Conservation; Genetic distance; Heterozygote excess; Isolation by distance; Population decline

Indexed keywords

GENETIC DISTANCE; GENETIC DRIFT; GENETIC RELATIONSHIP; GENETIC STRUCTURE; GENETIC VARIABILITY; MICROSATELLITE DNA; MOLECULAR ECOLOGY; MUTATION; POPULATION DECLINE; POPULATION STRUCTURE; UNITED KINGDOM;

ALLELES; ANIMALS; ECOLOGY; EVOLUTION, MOLECULAR; GENETICS, POPULATION; GREAT BRITAIN; MICROSATELLITE REPEATS; POLYMERASE CHAIN REACTION; SONGBIRDS; VARIATION (GENETICS);

EID: 0034915192     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2001.01305.x     Document Type: Article

References (105)

1. Spatial relationship and gene flow paths between populations of the alpine snail Arianta arbustorum
2. Genetic and morphometric divergence in ancestral European and descendent New Zealand populations of chaffinches (Fringilla coelebs)
3. Genetic and morphometric differentiation in introduced populations of common chaffinches (Fringilla coelebs) in New Zealand
4. Gene flow, effective population sizes, and genetic variance components in birds
5. Phylogeography of spotted owl (Strix occidentalis) populations based on mitochondrial DNA sequences: Gene flow, genetic structure, and a novel biogeographic pattern
6. Morphological and molecular variation across a migratory divide in willow warblers, Phylloscopus trochilus
7. Isolation and characterization of microsatellite loci in a Phylloscopus warbler
8. The ghost of genetic diversity past: Historical DNA analysis of the Greater Prairie chicken
9. The ecology of yellowhammers on lowland farmland
10. Habitat associations and breeding success of yellowhammers on lowland farmland
11. The historical pattern of gene flow among migratory and nonmigratory populations of prairie warblers (Aves: Parulinae)
12. The effects of founding bottlenecks on genetic variation in the European starling (Sturnus vulgaris) in North America
13. Bottleneck effects on average heterozygosity and genetic distance with the stepwise mutation model
14. Random amplified polymorphic DNA analysis of southern brown bandicoot (Isoodon obesulus) populations in Western Australia reveals genetic differentiation related to environmental variables
15. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data
16. Genetic structure of avian populations - Allozymes revisited
17. Genetic diversity in the Eurasian otter, Lutra lutra, in Scotland. Evidence from microsatellite polymorphism
18. Isolation of microsatellite DNA markers from a passerine bird, Dendroica petechia (the yellow warbler), and their use in population studies
19. Mutational processes of simple-sequence repeat loci in human populations
20. Genetic structure of the flogs Geocrinia lutea and Geocrinia rosea reflects extreme population divergence and range changes, not dispersal barriers
21. Conservation genetics
22. Population declines and range contractions among lowland farmland birds in Britain
23. A comparison of two indirect methods for estimating average levels of gene flow using microsatellite data
24. Limited differentiation in microsatellite DNA variation among northern populations of the yellow warbler: Evidence for male-biased gene flow
25. Genetic differentiation in Silene dioica metapopulations: Estimation of spatiotemporal effects in a successional plant species
26. Microsatellite variation in a North American population of Drosophila melanogaster
27. An evaluation of genetic distances for use with microsatellite loci
28. Population introgression and differentiation in the great cormorant Phalacrocorax carbo in Europe
29. Fstat, version 1.2, a computer program to calculate F-statistics
30. Genetic variation and bill size dimorphism in a passerine bird, the reed bunting Emberiza schoeniclus
31. 'Ghost' alleles of the Mauritius kestrel
32. Performing the exact test of Hardy-Weinberg proportions for multiple alleles
33. Discrepancies in population differentiation at microsatellites, mitochondrial DNA and plumage colour in the pied flycatcher -Inferring evolutionary processes
34. Isolation and characterization of microsatellite loci in a passerine bird: The reed bunting Emberiza schoeniclus
35. Metapopulation dynamics
36. Perspective: Highly variable loci and their interpretation in evolution and conservation
37. Impact of population bottlenecks on genetic variation and the importance of life-history; a case study of the northern elephant seal
38. Extinction-recolonization dynamics in the mycophagus beetle Phalacrus substriatus
39. Influence of landscape on the population genetic structure of the alpine butterfly Parnassius smintheus (Papilionidae)
40. The number of alleles that can be maintained in a finite population
41. Stepwise mutation model and distribution of allelic frequencies in a finite population
42. Macro- and microgeographic structure of a spatially subdivided beetle species in nature
43. Polymorphic microsatellite markers for population analysis of a tephritid pest species, Bactrocera tryoni
44. The second silent spring?
45. Farmland habitat change and abundance of yellowhammers Emberiza citrinella: An analysis of common birds census data
46. Genetics and demography in biological conservation
47. Microgeographic structure of Anopheles gambiae in western Kenya based on mtDNA and microsatellite loci
48. An exact test for Hardy-Weinberg and multiple alleles
49. Hierarchical analyses of genetic differentiation in a hybrid zone of Sorex araneus (Insectivora: Soricidae)
50. Empirical evaluation of a test for recently bottlenecked populations from allele frequency data
51. The detection of disease clustering and a generalized regression approach
52. Comparative population structure and gene flow of a brood parasite, the great spotted cuckoo (Clamator glandarius), and primary host, the magpie (Pica pica)
53. Population bottlenecks and nonequilibrium models in population genetics. II. Number of alleles in small population that was formed by a recent bottleneck
54. Diverse effects of forest fragmentation on a number of animal species
55. Contrasting genetic structures in sister species of North American scrub-jays
56. Foraging habitat selection by yellowhammers (Emberiza citrinella) in agriculturally contrasting regions in lowland England
57. Microsatellite variation and microevolution in the critically endangered San Clemente Island loggerhead shrike (Lanius ludovicianus mearnsi)
58. Polymorphic microsatellite markers in the loggerhead shrike Lanius ludovicianus isolated from a library enriched for CA repeats
59. Genetic distances between populations
60. The bottleneck effect and genetic variability in populations
61. An empirical evaluation of genetic distance statistics using microsatellite data from bear (Ursidae) populations
62. Variation in genetic diversity across the range of North American brown bears
63. Patterns of natal and breeding dispersal in birds
64. Molecular genetic status of Aleutian Canada Geese from Buldir and the Semidi Islands, Alaska
65. Local genetic structure in red grouse (Lagopus lagopus scoticus): Evidence from microsatellite DNA markers
66. Plausible alternatives to bottlenecks to explain reduced genetic diversity
67. An exact test for population differentiation
68. Genepop (Version 1.2): Population genetics software for exact tests and ecumenicism
69. Analyzing tables of statistical tests
70. Laboratory experiments on speciation: What have we learned in 40 years?
71. Evaluating a putative bottleneck in a population of bowhead whales from patterns of microsatellite diversity and genetic disequilibria
72. Testing heterozygote excess and deficiency
73. Inbreeding and extinction in a butterfly metapopulation
74. Genetic variability in a hybrid zone between carrion and hooded crows (Corvus corone corone and C. c. cornix, Passeriformes, Aves) in northwestern Italy
75. A novel measure of genetic distance for highly polymorphic tandem repeat loci
76. Habitat fragmentation and population extinction of birds
77. Trends in the abundance of farmland birds: A quantitative comparison of smoothed common birds census indices
78. Variation in the survival rates of some British passerines with respect to their population trends on farmland
79. Temporal variation in the annual survival rates of six granivorous birds with contrasting population trends
80. The importance of variation in the breeding performance of seed-eating birds for their population trends on farmland
81. Isolation by distance in equilibrium and nonequilibrium populations
82. A measure of population subdivision based on microsatellite allele frequencies
83. Multiple regression and correlation extensions of the Mantel test of matrix correspondence
84. Experimental evaluation of the usefulness of microsatellite DNA for detecting demographic bottlenecks
85. Founder events and variation at microsatellite loci in an insular passerine bird, the Laysan finch (Telespiza cantans)
86. Estimating F-statistics for the analysis of population structure
87. Tracking the long-term decline and recovery of an isolated population
88. Nonequilibrium population structure in forked fungus beetles: Extinction, colonization, and the genetic variance among populations
89. Temporal fluctuations in demographic parameters and the genetic variance among populations
90. Some population genetic consequences of colony formation and extinction: Genetic correlations within founding groups
91. Habitat fragmentation: Island v landscape perspectives on bird conservation
92. The relevance of population structure to the conservation of the corn bunting Miliaria calandra and other declining species
93. Isolation by distance
94. The genetical structure of populations
95. The geography of mitochondrial DNA variation, population structure, and hybridization in the fox sparrow (Passerella iliaca)
96. Patterns of allozyme, mitochondrial DNA, and morphometric variation in 4 sparrow genera
97. Gene flow, refugia, and evolution of geographic variation in the song sparrow (Melospitza melodia)