Molecular phylogeny of the chipmunks inferred from mitochondrial cytochrome b and cytochrome oxidase II gene sequences

Molecular Phylogenetics and Evolution

Volumn 20, Issue 3, 2001, Pages 335-350

  Piaggio, Antoinette J ^a   Spicer, Greg S ^a  

^a SAN FRANCISCO STATE UNIVERSITY   (United States)

Author keywords

Cytochrome b; Cytochrome oxidase subunit II; Eutamias; Maximum likelihood; Mitochondrial DNA; Molecular clock; Molecular evolution; Neotamias; Phylogenetics; Tamias

Indexed keywords

CYTOCHROME B; CYTOCHROME C OXIDASE; ENZYME SUBUNIT; GENE SEQUENCE; GENETIC DIVERGENCE; MAXIMUM LIKELIHOOD METHOD; MITOCHONDRION; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; UNITED STATES;

TAMIAS;

EID: 0034854244     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.2001.0975     Document Type: Article

References (77)

1. A description of the baculum and os clitoris of Eutamias townsendii ochrogenys
2. A review of some of the North American ground squirrels of the genus Tamias
3. Sequence and organization of the human mitochondrial genome
4. Parapatry and encounter competition between chipmunk (Tamias) species and the hypothesized role of parasitism
5. A review of the North American Tertiary Sciuridae
6. Holarctic evolution and dispersal of squirrels (Rodentia: Sciuridae)
7. Mechanisms of competitive exclusion between two species of chipmunks
8. Mitochondrial DNA sequences of primates: Tempo and mode of evolution
9. Phylogeny of Nearctic Sciuridae
10. Behavioral factors in the altitudinal zonation of chipmunks (Eutamias)
11. The families and genera of living rodents with a list of named forms (1758-1936)
12. Evolution of the chipmunk genera Eutamias and Tamias
13. Confidence limits on phylogenies: An approach using bootstrap
14. Biogeography of Southwestern boreal and desert mammals
15. DNA-DNA hybridization evidence for the recent origin of marmots and ground squirrels (Rodentia: Sciuridae)
16. Evolutionary relationships of the Nearctic Sciuridae
17. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
18. Altitudinal zonation of chipmunks (Eutamias): Interspecific aggression
19. Nucleic acids IV: Sequencing and cloning
20. Mammalian mitochondrial DNA evolution: A comparison of the cytochrome b and cytochrome c oxidase II genes
21. Diagnoses of seven new chipmunks of the genus Eutamias, with a list of the American species
22. Evolution of the cytochrome b gene of mammals
23. Host-ectoparasite relationships among North American chipmunks
24. Evolution of protein molecules
25. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
26. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order of the Hominodea
27. Gray-collared chipmunk (Tamias cinereicollis)
28. Dynamics of mitochondrial DNA evolution in mammals: Amplification and sequencing with conserved primers
29. Rapid and reliable protocol for direct sequencing of material amplified by the polymerase chain reaction
30. A new method for calculating evolutionary substitution rates
31. Systematic relationships among taxa in the Townsend chipmunk group
32. Systematics of the Holarctic chipmunk (Tamias)
33. Adaptive differentiation following experimental island colonization in Anolis lizards
34. Contingency and determinism in replicated adaptive radiations of island lizards
35. Relationships among the living squirrels of the Sciurinae
36. The spread of existing diurnal squirrels across the Bering and Panamanian land bridges
37. Contributions of chromosomal analysis to the systematics of North American chipmunks
38. The chromosomes of some North American chipmunks (Sciuridae) belonging to the genera Tamias and Eutamias
39. Chromosomes of the Asian chipmunk Eutamias sibiricus Laxmann (Rodentia: Sciuridae)
40. Chromosomal evolution in chipmunks, with special emphasis on A and B karyotypes of the subgenus Neotamias
41. Biochemical and morphological relationships among Holarctic chipmunks
42. Ecology and speciation
43. Banded karyotype of Asiatic chipmunk, Tamias sibiricus lineatus Siebold
44. Montane mammalian biogeography in New Mexico
45. A new subspecies of Eutamias quadrivittatus (Rodentia: Sciuridae) from the Organ Mountains of New Mexico
46. Morphological shifts of some isolated populations of Eutamias (Rodentia: Sciuridae) in different congeneric assemblages
47. Pleistocene vicariance, montane islands, and the evolutionary divergence of some chipmunks (genus Eutamias)
48. On the phyletic weight of mensural cranial characters in chipmunks and their allies (Rodentia: Sciuridae)
49. Patterns of nucleotide composition at four fold degenerate sites of animal mitochondrial genomes
50. Molecular phylogeny of the chipmunk genus Tamias based on the mitochondrial cytochrome oxidase subunit II gene
51. Laboratory experiments on speciation: What have we learned in 40 years?
52. The general stochastic model of nucleotide substitution
53. Consensus indices for comparing classifications
54. Sympatric speciation suggested by monophyly of crater lake cichlids
55. Habitat use by sympatric species of Eutamias
56. Competition between two chipmunk species (Eutamias)
57. Phylogenetic utility of the mitochondrial cytochrome oxidase gene: Molecular evolution of the Drosophila buzzatii species complex
58. Molecular phylogeny of the Marmots (Rodentia:Sciuridae): Tests of evolutionary and biogeographic hypotheses
59. Analysis of Pacific Coast Townsend chipmunks (Rodentia: Sciuridae)
60. Chromosomes of the North American chipmunk genus Eutamias
61. Systematic revision of three Townsend chipmunks (Eutamias townsendii)
62. Phylogeny reconstruction
63. A recent origin of Marmots
64. Nucleic Acids I: DNA and DNA hybridization
65. Phylogeny of six Sciurus aberti subspecies based on nucleotide sequences of cytochrome b
66. Genera and subgenera of chipmunks
67. Geographic distribution and taxonomy of the chipmunks of Wyoming
68. The baculum in the chipmunks of western North America
69. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
70. Comparison of models for nucleotide substitution used in maximum likelihood phylogenetic estimation
71. Molecular evolutionary dynamics of cytochrome beta in strepsirrhine primates: The phylogenetic significance of third position transversions