Fast approximate motif statistics

Journal of Computational Biology

Volumn 8, Issue 3, 2001, Pages 235-248

  Nicodeme P ^a  

^a CNRS   (France)

Author keywords

Prosite motifs; Proteomes comparison

Indexed keywords

AMINO ACID; FUNGAL PROTEIN; PROTEOME;

ARTICLE; CAENORHABDITIS ELEGANS; CONTROLLED STUDY; DATA BASE; INTERMETHOD COMPARISON; MATHEMATICAL MODEL; NONHUMAN; PRIORITY JOURNAL; PROTEIN MOTIF; SACCHAROMYCES CEREVISIAE; SPECIES DIFFERENCE; STATISTICAL ANALYSIS; VALIDATION PROCESS;

AMINO ACID MOTIFS; ANIMALS; CAENORHABDITIS ELEGANS; DATABASES, FACTUAL; GENOME; MODELS, STATISTICAL; POISSON DISTRIBUTION; SACCHAROMYCES CEREVISIAE; SOFTWARE;

EID: 0034808556     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/10665270152530836     Document Type: Article

References (17)

1. Calculating the exact probability of language-like patterns in biomolecular sequences
2. Patterns in random binary search trees
3. The average case analysis of algorithms: Counting and generating functions
4. Motif statistics
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6. Finding words with unexpected frequencies in deoxyribonucleic acid sequences
7. A unified approach to words statistics
8. On pattern frequency occurrences in a Markovian sequence
9. Compound poisson approximations for occurrences of multiple words in Markov chains
10. Automata-theoretic aspects of formal power series
11. Exceptional motifs in different Markov chain models for a statistical analysis of DNA sequences
12. Method for calculation of probability of matching a bounded regular expression in a random data string
13. The modular arrangement of proteins as inferred from analysis of homology