Exact distribution for the local score of one i.i.d. Random sequence

Journal of Computational Biology

Volumn 8, Issue 4, 2001, Pages 373-380

  Mercier, S ^a   Daudin, J J ^b  

^a UNIVERSITÉ DE TOULOUSE   (France)

^b AGROPARISTECH   (France)

Author keywords

Local score; Markov chain; P value; Sequence analysis

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; DNA SEQUENCE; GENETIC VARIABILITY; MATHEMATICAL ANALYSIS; MOLECULAR BIOLOGY; PRIORITY JOURNAL; PROBABILITY; SCORING SYSTEM; SEQUENCE ANALYSIS;

COMPUTATIONAL BIOLOGY; DNA-BINDING PROTEINS; MARKOV CHAINS; NUCLEAR PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, PROTEIN;

EID: 0034796947     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/106652701752236197     Document Type: Article

References (13)

1. Basic local alignment search tool
2. Critical phenomena in sequence matching
3. Critical phenomena for sequence matching with scoring
4. Limit distribution of maximal non-aligned two-sequence segmental score
5. Extremes values in the GI/G/1 queues
6. Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
7. Limit distributions of maximal segmental score among Markov-dependent partial sums
8. A simple method for displaying the hydrophatic character of a protein
9. Approximate statistics of gapped alignments