Predicting class II MHC/peptide multi-level binding with an iterative stepwise discriminant analysis meta-algorithm

Bioinformatics

Volumn 17, Issue 10, 2001, Pages 942-948

  Mallios, R R ^a  

^a University of Californiae   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HLA DR1 ANTIGEN; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2; T LYMPHOCYTE RECEPTOR; VACCINE;

ALGORITHM; ANTIGEN BINDING; ARTICLE; CLASSIFICATION; CONTROLLED STUDY; DATA BASE; DRUG DESIGN; MEDICAL INFORMATION; META ANALYSIS; PREDICTION; PRIORITY JOURNAL; PROTEIN MOTIF;

EID: 0034782871     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/17.10.942     Document Type: Article

References (18)

1. Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1
2. MHCPEP, a database of MHC-binding peptides: Update
3. Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network
4. Predominant naturally processed peptides bound to HLA-DR1 are derived from MHC-related molecules and are heterogeneous in size
5. Pool sequencing of natural HLA-DR, DQ, and DP ligands reveals detailed peptide motifs, constraints of processing, and general rules
6. New ligands binding to the human leukocyte antigen class II molecule DRB1*0101 based on the activity pattern of an undecapeptide library
7. Two complementary methods for predicting peptides binding major histocompatibility complex molecules
8. Identification of a motif for HLA-DR1 binding peptides using M13 display libraries
9. Promiscuous and allele-specific anchors in HLA-DR-binding peptides
10. Class II MHC quantitative binding motifs derived from a large molecular database with a versatile iterative stepwise discriminant analysis meta-algorithm
11. Prediction of peptide affinity to HLA DRB1*0401
12. Characterization of the specificity of peptide binding to four DR haplotypes
13. Truncation analysis of several DR binding epitopes
14. On the interaction of promiscuous antigenic peptides with different DR alleles
15. Several common HLA-DR types share largely overlapping peptide binding repertoires
16. Crystal structure of the human class II MHC protein HLA-DR1 complexed with an influenza virus peptide